Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0000576

Physical Location & Seq

Genomic Coordinates Forward (+)

39105407 .. 39105876

Gene Structure 470 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000029466

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGGTAGTGATGGCAGGTCTTGATCTGCTTATGCTTTTCTTGATCGCGTTTGGGAACACTGATGCTGTATTGCGTTCGGGGGTTGCATGTGCTGTTGTTTCTGCGTCCGAACTTGATGGTGCAGTGAAAGATGCAGCCTCGTGGGAGGGGATGGCATTTAGATGGCAGTTGAGCAGAGATCCAGTCTTGTGGCGTGCCGGCGGTCTTACTATCCCGGATGGTGACGGAGTGCTGGCTTGCTCGAAACTAGGGACTATTGTTTCTGATGGTGGTGCTCATGGATCTAACGACTGCAAGTATGGAGGCAAGAGCGGCTATGGTTCACTCTGTTTTGTGGGCTATACGCAAGGCTGGCTTTGGGTGGGTTGCGCATTCTGTTTTAGGATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

130

Amino Acids

13.51

Weight (kDa)

5.1

Isoelectric Point (pI)

27.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000576)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0496101
rosa_laevigata	RLG00000001000 RLG00000003686 RLG00000004631 RLG00000004905 RLG00000005430 RLG00000005713 RLG00000007389 RLG00000011894 RLG00000014857 RLG00000017726 RLG00000020028 RLG00000020869 RLG00000021046 RLG00000023109 RLG00000026629 RLG00000027568 RLG00000027741 RLG00000027989 RLG00000029466 RLG00000032523 RLG00000034953 RLG00000035012 RLG00000036930
rosa_multiflora	Rmu_sc0001298.1_g000014 Rmu_sc0010937.1_g000002
rosa_roxburghii	Rroxscaffold_3G00236180 Rroxscaffold_4G00282370 Rroxscaffold_4G00287700 Rroxscaffold_5G00344480 Rroxscaffold_6G00420630
rosa_rugosa	Rorug04G0441100 Rorug07G0282000
rosa_samantha	Rh1AG357100 Rh1BG076300 Rh1BG240500 Rh1BG369300 Rh1CG024800 Rh1CG092500 Rh1DG099000 Rh1DG268800 Rh2AG264600 Rh2AG530800 Rh2AG530900 Rh2BG059300 Rh2BG494200 Rh2BG521900 Rh2BG545400 Rh2CG061100 Rh2CG515200 Rh2DG271900 Rh2DG503300 Rh2DG531800 Rh3AG105800 Rh3AG326600 Rh3BG110000 Rh3CG111500 Rh3DG111600 Rh4AG180600 Rh4CG191700 Rh4DG037400 Rh5AG112900 Rh5AG149800 Rh5AG470600 Rh5BG490300 Rh5BG551700 Rh5CG160600 Rh5CG514300 Rh5CG574500 Rh5DG108700 Rh5DG114200 Rh5DG148200 Rh5DG298500 Rh5DG416900 Rh6CG280200 Rh6CG397900 Rh6DG215700 Rh6DG231300 Rh6DG272800 Rh7CG104800 Rh7CG247000 Rh7DG211100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	370
Acc36I	ACCTGC	1 cut(s)	5
AccBSI	CCGCTC	1 cut(s)	312
AccII	CGCG	1 cut(s)	47
AciI	CCGC	2 cut(s)	201, 312
AclWI	GGATC	2 cut(s)	173, 289
Alw21I	GWGCWC	1 cut(s)	277
AlwI	GGATC	2 cut(s)	173, 289
ApeKI	GCWGC	1 cut(s)	134
AspLEI	GCGC	1 cut(s)	371
AsuC2I	CCSGG	1 cut(s)	215
AsuHPI	GGTGA	1 cut(s)	233
BauI	CACGAG	1 cut(s)	139
Bbv12I	GWGCWC	1 cut(s)	277
BbvI	GCAGC	1 cut(s)	146
BccI	CCATC	6 cut(s)	4, 110, 145, 156, 212, 260
BcnI	CCSGG	1 cut(s)	215
BfaI	CTAG	1 cut(s)	248
BfuAI	ACCTGC	1 cut(s)	5
BisI	GCNGC	2 cut(s)	135, 313
BlsI	GCNGC	2 cut(s)	136, 314
Bme1390I	CCNGG	1 cut(s)	215
BmrFI	CCNGG	1 cut(s)	215
BmsI	GCATC	2 cut(s)	52, 121
BpuMI	CCSGG	1 cut(s)	215
Bse118I	RCCGGY	1 cut(s)	197
Bse1I	ACTGG	1 cut(s)	182
BseGI	GGATG	2 cut(s)	156, 223
BseNI	ACTGG	1 cut(s)	182
BseXI	GCAGC	1 cut(s)	146
BsgI	GTGCAG	1 cut(s)	141
Bsh1236I	CGCG	1 cut(s)	47
BsiHKAI	GWGCWC	1 cut(s)	277
BsiSI	CCGG	2 cut(s)	198, 215
BslFI	GGGAC	1 cut(s)	265
BsmFI	GGGAC	1 cut(s)	265
BsmI	GAATGC	1 cut(s)	371
Bsp1286I	GDGCHC	1 cut(s)	277
Bsp143I	GATC	4 cut(s)	22, 42, 178, 281
BspACI	CCGC	2 cut(s)	201, 312
BspFNI	CGCG	1 cut(s)	47
BspMI	ACCTGC	1 cut(s)	5
BspPI	GGATC	2 cut(s)	173, 289
BsrBI	CCGCTC	1 cut(s)	312
BsrFI	RCCGGY	1 cut(s)	197
BsrI	ACTGG	1 cut(s)	182
BssAI	RCCGGY	1 cut(s)	197
BssMI	GATC	4 cut(s)	22, 42, 178, 281
BssSI	CACGAG	1 cut(s)	139
Bst2BI	CACGAG	1 cut(s)	139
BstC8I	GCNNGC	5 cut(s)	195, 199, 234, 238, 353
BstF5I	GGATG	2 cut(s)	156, 223
BstFNI	CGCG	1 cut(s)	47
BstHHI	GCGC	1 cut(s)	371
BstKTI	GATC	4 cut(s)	25, 45, 181, 284
BstMBI	GATC	4 cut(s)	22, 42, 178, 281
BstMWI	GCNNNNNNNGC	2 cut(s)	312, 352
BstNSI	RCATGY	1 cut(s)	90
BstSCI	CCNGG	1 cut(s)	213
BstUI	CGCG	1 cut(s)	47
BstV1I	GCAGC	1 cut(s)	146
BstX2I	RGATCY	2 cut(s)	178, 281
BstXI	CCANNNNNNTGG	1 cut(s)	189
BstYI	RGATCY	2 cut(s)	178, 281
BtsCI	GGATG	2 cut(s)	156, 223
BtsI	GCAGTG	1 cut(s)	129
BtsIMutI	CAGTG	2 cut(s)	57, 129
BveI	ACCTGC	1 cut(s)	5
Cac8I	GCNNGC	5 cut(s)	195, 199, 234, 238, 353
CfoI	GCGC	1 cut(s)	371
Cfr10I	RCCGGY	1 cut(s)	197
CseI	GACGC	1 cut(s)	93
CviAII	CATG	2 cut(s)	87, 278
CviJI	RGCY	6 cut(s)	137, 236, 315, 339, 351, 355
CviKI_1	RGCY	6 cut(s)	137, 236, 315, 339, 351, 355
DpnI	GATC	4 cut(s)	24, 44, 180, 283
DpnII	GATC	4 cut(s)	22, 42, 178, 281
FaeI	CATG	2 cut(s)	90, 281
FaiI	YATR	6 cut(s)	32, 88, 279, 300, 318, 342
FalI	AAGNNNNNCTT	2 cut(s)	339, 371
FaqI	GGGAC	1 cut(s)	265
FatI	CATG	2 cut(s)	86, 277
Fnu4HI	GCNGC	2 cut(s)	135, 313
FokI	GGATG	2 cut(s)	163, 230
Fsp4HI	GCNGC	2 cut(s)	135, 313
FspBI	CTAG	1 cut(s)	248
FspI	TGCGCA	1 cut(s)	370
GlaI	GCGC	1 cut(s)	370
GluI	GCNGC	2 cut(s)	135, 313
HapII	CCGG	2 cut(s)	198, 215
HgaI	GACGC	1 cut(s)	93
HhaI	GCGC	1 cut(s)	371
Hin1II	CATG	2 cut(s)	90, 281
Hin6I	GCGC	1 cut(s)	369
HinP1I	GCGC	1 cut(s)	369
HpaII	CCGG	2 cut(s)	198, 215
HphI	GGTGA	1 cut(s)	233
Hpy166II	GTNNAC	1 cut(s)	323
Hpy188I	TCNGA	2 cut(s)	109, 265
Hpy188III	TCNNGA	2 cut(s)	20, 40
Hpy8I	GTNNAC	1 cut(s)	323
HpyCH4V	TGCA	4 cut(s)	86, 122, 134, 294
HpyF10VI	GCNNNNNNNGC	2 cut(s)	312, 352
Hsp92II	CATG	2 cut(s)	90, 281
HspAI	GCGC	1 cut(s)	369
KroI	GCCGGC	1 cut(s)	197
KroNI	GCCGGC	1 cut(s)	199
Kzo9I	GATC	4 cut(s)	22, 42, 178, 281
LpnPI	CCDG	5 cut(s)	195, 211, 218, 228, 337
Lsp1109I	GCAGC	1 cut(s)	146
LweI	GCATC	2 cut(s)	52, 121
MaeI	CTAG	1 cut(s)	248
MaeIII	GTNAC	1 cut(s)	221
MalI	GATC	4 cut(s)	24, 44, 180, 283
MbiI	CCGCTC	1 cut(s)	312
MboI	GATC	4 cut(s)	22, 42, 178, 281
MflI	RGATCY	2 cut(s)	178, 281
MhlI	GDGCHC	1 cut(s)	277
MnlI	CCTC	3 cut(s)	139, 148, 296
MroNI	GCCGGC	1 cut(s)	197
MslI	CAYNNNNRTG	1 cut(s)	160
MspI	CCGG	2 cut(s)	198, 215
MspR9I	CCNGG	1 cut(s)	215
Mva1269I	GAATGC	1 cut(s)	371
MvnI	CGCG	1 cut(s)	47
MwoI	GCNNNNNNNGC	2 cut(s)	312, 352
NaeI	GCCGGC	1 cut(s)	199
NciI	CCSGG	1 cut(s)	215
NdeII	GATC	4 cut(s)	22, 42, 178, 281
NgoMIV	GCCGGC	1 cut(s)	197
NlaIII	CATG	2 cut(s)	90, 281
NmuCI	GTSAC	1 cut(s)	221
NsbI	TGCGCA	1 cut(s)	370
NspI	RCATGY	1 cut(s)	90
PctI	GAATGC	1 cut(s)	371
PdiI	GCCGGC	1 cut(s)	199
PfoI	TCCNGGA	1 cut(s)	213
PkrI	GCNGC	2 cut(s)	136, 314
PsuI	RGATCY	2 cut(s)	178, 281
RseI	CAYNNNNRTG	1 cut(s)	160
SatI	GCNGC	2 cut(s)	135, 313
Sau3AI	GATC	4 cut(s)	22, 42, 178, 281
ScrFI	CCNGG	1 cut(s)	215
SduI	GDGCHC	1 cut(s)	277
SetI	ASST	1 cut(s)	19
SfaNI	GCATC	2 cut(s)	52, 121
SmiMI	CAYNNNNRTG	1 cut(s)	160
SsiI	CCGC	2 cut(s)	201, 312
SspMI	CTAG	1 cut(s)	248
StyD4I	CCNGG	1 cut(s)	213
TaqI	TCGA	1 cut(s)	242
TauI	GCSGC	1 cut(s)	315
TscAI	CASTG	2 cut(s)	64, 129
TseFI	GTSAC	1 cut(s)	221
TseI	GCWGC	1 cut(s)	134
Tsp45I	GTSAC	1 cut(s)	221
TspGWI	ACGGA	1 cut(s)	240
TspRI	CASTG	2 cut(s)	64, 129
XceI	RCATGY	1 cut(s)	90
XspI	CTAG	1 cut(s)	248

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.