Rh7CG104800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0000576
Physical Location & Seq
Reverse (-)
7952580 .. 7952939
360 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG104800.1

Sequence Viewer

Length: 360 bp
ATGAGCGACGATCCAGTCTTGGGTTGGTCAAGATTGAATCGGAAAGGTCGTTTCCGATCGAGTCCATGGGACGATGGTGCACATGTTGTAGGTGCTGATCTTTGGCGTGCCGGTGACCTTGCTGTCGTGGACGGTGAGGGTGTGCTGGTTTGCTCGGACTCGGGGACTGCTACTTCTGATGGTGGTGCTCATGGGTATAACGGCTGTAAGTATGGAGGCAAGGGTGACTATCAAATCATACCGGGGTTGCCGGAGGTGAGGGTGGATCTGTTTTCCTTAGGCCTGGACCTTTTGTTGGCGGGGATGATGGCGTGGCTTTGCTCGTCGGAGGAGATTGCCTCTGATGGTGATAATGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

119

Amino Acids

12.53

Weight (kDa)

4.33

Isoelectric Point (pI)

30.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 14, 122
AciI CCGC 1 cut(s) 299
AclWI GGATC 2 cut(s) 5, 273
AfiI CCNNNNNNNGG 2 cut(s) 20, 295
AflIII ACRYGT 1 cut(s) 82
AgsI TTSAA 1 cut(s) 37
AjnI CCWGG 1 cut(s) 282
Alw21I GWGCWC 2 cut(s) 82, 190
Alw44I GTGCAC 1 cut(s) 78
AlwI GGATC 2 cut(s) 5, 273
Ama87I CYCGRG 1 cut(s) 160
AoxI GGCC 1 cut(s) 280
ApaLI GTGCAC 1 cut(s) 78
AspS9I GGNCC 1 cut(s) 286
AsuC2I CCSGG 1 cut(s) 243
AsuHPI GGTGA 5 cut(s) 125, 146, 236, 268, 359
AvaI CYCGRG 1 cut(s) 160
AvaII GGWCC 1 cut(s) 286
AxyI CCTNAGG 1 cut(s) 277
BaeGI GKGCMC 1 cut(s) 82
Bbv12I GWGCWC 2 cut(s) 82, 190
BccI CCATC 4 cut(s) 68, 173, 301, 338
BceAI ACGGC 1 cut(s) 217
BciT130I CCWGG 1 cut(s) 284
BcnI CCSGG 1 cut(s) 243
BfaI CTAG 1 cut(s) 358
Bme1390I CCNGG 2 cut(s) 243, 284
Bme18I GGWCC 1 cut(s) 286
BmeT110I CYCGRG 1 cut(s) 160
BmgT120I GGNCC 1 cut(s) 286
BmrFI CCNGG 2 cut(s) 243, 284
BplI GAGNNNNNCTC 2 cut(s) 323, 355
BpuMI CCSGG 1 cut(s) 243
BsaJI CCNNGG 2 cut(s) 65, 242
Bsc4I CCNNNNNNNGG 2 cut(s) 20, 295
Bse118I RCCGGY 1 cut(s) 110
Bse1I ACTGG 1 cut(s) 14
Bse21I CCTNAGG 1 cut(s) 277
BseBI CCWGG 1 cut(s) 284
BseDI CCNNGG 2 cut(s) 65, 242
BseGI GGATG 1 cut(s) 309
BseLI CCNNNNNNNGG 2 cut(s) 20, 295
BseNI ACTGG 1 cut(s) 14
BseRI GAGGAG 1 cut(s) 344
BseSI GKGCMC 1 cut(s) 82
Bsh1285I CGRYCG 1 cut(s) 59
BshFI GGCC 1 cut(s) 282
BsiEI CGRYCG 1 cut(s) 59
BsiHKAI GWGCWC 2 cut(s) 82, 190
BsiHKCI CYCGRG 1 cut(s) 160
BsiSI CCGG 3 cut(s) 111, 242, 251
BslFI GGGAC 2 cut(s) 83, 178
BslI CCNNNNNNNGG 2 cut(s) 20, 295
BsmFI GGGAC 2 cut(s) 83, 178
BsnI GGCC 1 cut(s) 282
BsoBI CYCGRG 1 cut(s) 160
Bsp1286I GDGCHC 2 cut(s) 82, 190
Bsp143I GATC 4 cut(s) 10, 56, 97, 265
Bsp19I CCATGG 1 cut(s) 65
BspACI CCGC 1 cut(s) 299
BspANI GGCC 1 cut(s) 282
BspPI GGATC 2 cut(s) 5, 273
BsrFI RCCGGY 1 cut(s) 110
BsrI ACTGG 1 cut(s) 14
BssAI RCCGGY 1 cut(s) 110
BssECI CCNNGG 2 cut(s) 65, 242
BssMI GATC 4 cut(s) 10, 56, 97, 265
BssT1I CCWWGG 1 cut(s) 65
Bst2UI CCWGG 1 cut(s) 284
Bst4CI ACNGT 1 cut(s) 134
BstC8I GCNNGC 1 cut(s) 108
BstDEI CTNAG 1 cut(s) 277
BstDSI CCRYGG 1 cut(s) 65
BstEII GGTNACC 1 cut(s) 113
BstF5I GGATG 1 cut(s) 309
BstKTI GATC 4 cut(s) 13, 59, 100, 268
BstMBI GATC 4 cut(s) 10, 56, 97, 265
BstMCI CGRYCG 1 cut(s) 59
BstNI CCWGG 1 cut(s) 284
BstNSI RCATGY 1 cut(s) 86
BstPI GGTNACC 1 cut(s) 113
BstSCI CCNGG 2 cut(s) 241, 282
BstSLI GKGCMC 1 cut(s) 82
BstX2I RGATCY 1 cut(s) 265
BstYI RGATCY 1 cut(s) 265
Bsu36I CCTNAGG 1 cut(s) 277
BsuRI GGCC 1 cut(s) 282
BtgI CCRYGG 1 cut(s) 65
BtsCI GGATG 1 cut(s) 309
Cac8I GCNNGC 1 cut(s) 108
Cfr10I RCCGGY 1 cut(s) 110
Cfr13I GGNCC 1 cut(s) 286
CviAII CATG 3 cut(s) 66, 83, 191
CviJI RGCY 3 cut(s) 204, 282, 316
CviKI_1 RGCY 3 cut(s) 204, 282, 316
DdeI CTNAG 1 cut(s) 277
DpnI GATC 4 cut(s) 12, 58, 99, 267
DpnII GATC 4 cut(s) 10, 56, 97, 265
DrdI GACNNNNNNGTC 2 cut(s) 14, 122
DseDI GACNNNNNNGTC 2 cut(s) 14, 122
Eco130I CCWWGG 1 cut(s) 65
Eco147I AGGCCT 1 cut(s) 282
Eco47I GGWCC 1 cut(s) 286
Eco81I CCTNAGG 1 cut(s) 277
Eco88I CYCGRG 1 cut(s) 160
Eco91I GGTNACC 1 cut(s) 113
EcoO65I GGTNACC 1 cut(s) 113
EcoRII CCWGG 1 cut(s) 282
EcoT14I CCWWGG 1 cut(s) 65
ErhI CCWWGG 1 cut(s) 65
FaeI CATG 3 cut(s) 69, 86, 194
FaiI YATR 6 cut(s) 67, 84, 192, 198, 213, 239
FaqI GGGAC 2 cut(s) 83, 178
FatI CATG 3 cut(s) 65, 82, 190
FauI CCCGC 1 cut(s) 292
FokI GGATG 1 cut(s) 316
FspBI CTAG 1 cut(s) 358
HaeIII GGCC 1 cut(s) 282
HapII CCGG 3 cut(s) 111, 242, 251
Hin1II CATG 3 cut(s) 69, 86, 194
HinfI GANTC 3 cut(s) 37, 61, 158
HpaII CCGG 3 cut(s) 111, 242, 251
HphI GGTGA 5 cut(s) 125, 146, 236, 268, 359
Hpy166II GTNNAC 2 cut(s) 80, 130
Hpy188I TCNGA 6 cut(s) 42, 56, 157, 178, 328, 343
Hpy188III TCNNGA 1 cut(s) 30
Hpy8I GTNNAC 2 cut(s) 80, 130
Hpy99I CGWCG 2 cut(s) 11, 328
HpyCH4III ACNGT 1 cut(s) 134
HpyCH4V TGCA 1 cut(s) 80
HpyF3I CTNAG 1 cut(s) 277
Hsp92II CATG 3 cut(s) 69, 86, 194
Kzo9I GATC 4 cut(s) 10, 56, 97, 265
LpnPI CCDG 7 cut(s) 27, 124, 131, 255, 264, 269, 296
MaeI CTAG 1 cut(s) 358
MaeIII GTNAC 2 cut(s) 113, 224
MalI GATC 4 cut(s) 12, 58, 99, 267
MboI GATC 4 cut(s) 10, 56, 97, 265
MflI RGATCY 1 cut(s) 265
MhlI GDGCHC 2 cut(s) 82, 190
MlyI GAGTC 2 cut(s) 70, 152
MmeI TCCRAC 1 cut(s) 306
MnlI CCTC 6 cut(s) 130, 209, 247, 252, 322, 349
MspI CCGG 3 cut(s) 111, 242, 251
MspR9I CCNGG 2 cut(s) 243, 284
MvaI CCWGG 1 cut(s) 284
NciI CCSGG 1 cut(s) 243
NcoI CCATGG 1 cut(s) 65
NdeII GATC 4 cut(s) 10, 56, 97, 265
NlaIII CATG 3 cut(s) 69, 86, 194
NmuCI GTSAC 2 cut(s) 113, 224
NspI RCATGY 1 cut(s) 86
PceI AGGCCT 1 cut(s) 282
PciI ACATGT 1 cut(s) 82
PcsI WCGNNNNNNNCGW 1 cut(s) 46
PfeI GAWTC 1 cut(s) 37
Ple19I CGATCG 1 cut(s) 59
PleI GAGTC 2 cut(s) 69, 152
PpsI GAGTC 2 cut(s) 69, 152
PscI ACATGT 1 cut(s) 82
Psp6I CCWGG 1 cut(s) 282
PspEI GGTNACC 1 cut(s) 113
PspGI CCWGG 1 cut(s) 282
PspPI GGNCC 1 cut(s) 286
PsuI RGATCY 1 cut(s) 265
PvuI CGATCG 1 cut(s) 59
Sau3AI GATC 4 cut(s) 10, 56, 97, 265
Sau96I GGNCC 1 cut(s) 286
SchI GAGTC 2 cut(s) 70, 152
ScrFI CCNGG 2 cut(s) 243, 284
SduI GDGCHC 2 cut(s) 82, 190
SetI ASST 5 cut(s) 49, 94, 120, 258, 291
SinI GGWCC 1 cut(s) 286
SseBI AGGCCT 1 cut(s) 282
SsiI CCGC 1 cut(s) 299
SspMI CTAG 1 cut(s) 358
StuI AGGCCT 1 cut(s) 282
StyD4I CCNGG 2 cut(s) 241, 282
StyI CCWWGG 1 cut(s) 65
TaaI ACNGT 1 cut(s) 134
TaqI TCGA 1 cut(s) 59
TfiI GAWTC 1 cut(s) 37
TseFI GTSAC 2 cut(s) 113, 224
Tsp45I GTSAC 2 cut(s) 113, 224
VneI GTGCAC 1 cut(s) 78
VpaK11BI GGWCC 1 cut(s) 286
XceI RCATGY 1 cut(s) 86
XcmI CCANNNNNNNNNTGG 1 cut(s) 21
XspI CTAG 1 cut(s) 358
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.