Rh6CG397900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0000576
Physical Location & Seq
Forward (+)
58472947 .. 58473414
468 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG397900.1

Sequence Viewer

Length: 468 bp
ATGGCAGATTTTGGTCTGCTTATTCTTTTCTTGGTTGCGTTGGGGGACGCTGTGGCTGTGGTGAACTCGGGGATTGGAGGCATTGGTGTTTTTGAGTCCAAACTCGATGGTGAAGTGAAAGATGCAGCCTTGTTGGTGGGGATGGCATCTAGATGGTGGATGAGCGACGATTCGGTCTTGGGTTGGTCAAGATCGGATCGGAAAGGTCGCTTCCGATCGCGTCCATGGCATTATTATGCAGCTGTTGCAGGGGTTGATATTGGACGTGTCGGTGACCTTATTGTTGTGGACGGCGATGGTTTGTTGGTTTGCCCGGGTGCCAGCGTCCTTCCCGGTGGAGCTCTTCGAGATAGCGGCGGCTTGTGGGTTAGTGGCGATAAATATGGGATTAGATTTGGTATCCGGTTGGGGAGCTTTTGTAGACACGGCAGTGTTCGTTCGGTGTCGTGGATTGGAGGTCGAAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

155

Amino Acids

16.44

Weight (kDa)

9.13

Isoelectric Point (pI)

46.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 173
AccB1I GGYRCC 1 cut(s) 317
AccI GTMKAC 1 cut(s) 421
AccII CGCG 1 cut(s) 220
AciI CCGC 2 cut(s) 354, 357
AclWI GGATC 1 cut(s) 204
AflIII ACRYGT 1 cut(s) 265
AjiI CACGTC 1 cut(s) 266
AleI CACNNNNGTG 1 cut(s) 429
AluBI AGCT 3 cut(s) 242, 341, 414
AluI AGCT 3 cut(s) 242, 341, 414
Alw21I GWGCWC 1 cut(s) 343
AlwI GGATC 1 cut(s) 204
Ama87I CYCGRG 2 cut(s) 67, 313
ApeKI GCWGC 2 cut(s) 125, 239
AsuC2I CCSGG 3 cut(s) 314, 315, 333
AsuHPI GGTGA 3 cut(s) 73, 122, 284
AvaI CYCGRG 2 cut(s) 67, 313
BanI GGYRCC 1 cut(s) 317
BanII GRGCYC 1 cut(s) 343
Bbv12I GWGCWC 1 cut(s) 343
BbvI GCAGC 2 cut(s) 137, 251
BccI CCATC 4 cut(s) 101, 136, 147, 290
BceAI ACGGC 2 cut(s) 307, 442
BciVI GTATCC 1 cut(s) 410
BcnI CCSGG 3 cut(s) 314, 315, 333
BfaI CTAG 1 cut(s) 150
BfuI GTATCC 1 cut(s) 410
BisI GCNGC 4 cut(s) 126, 240, 355, 358
BlsI GCNGC 4 cut(s) 127, 241, 356, 359
Bme1390I CCNGG 3 cut(s) 314, 315, 333
BmeT110I CYCGRG 2 cut(s) 67, 313
BmgBI CACGTC 1 cut(s) 266
BmiI GGNNCC 1 cut(s) 319
BmrFI CCNGG 3 cut(s) 314, 315, 333
BmsI GCATC 2 cut(s) 112, 155
BpuMI CCSGG 3 cut(s) 314, 315, 333
BsaJI CCNNGG 2 cut(s) 224, 313
BsaWI WCCGGW 1 cut(s) 402
BsaXI ACNNNNNCTCC 2 cut(s) 403, 433
BseDI CCNNGG 2 cut(s) 224, 313
BseGI GGATG 2 cut(s) 147, 165
BseXI GCAGC 2 cut(s) 137, 251
Bsh1236I CGCG 1 cut(s) 220
Bsh1285I CGRYCG 1 cut(s) 218
BshNI GGYRCC 1 cut(s) 317
BsiEI CGRYCG 1 cut(s) 218
BsiHKAI GWGCWC 1 cut(s) 343
BsiHKCI CYCGRG 2 cut(s) 67, 313
BsiSI CCGG 3 cut(s) 314, 333, 403
BslFI GGGAC 1 cut(s) 59
BsmFI GGGAC 1 cut(s) 59
BsoBI CYCGRG 2 cut(s) 67, 313
Bsp1286I GDGCHC 1 cut(s) 343
Bsp143I GATC 3 cut(s) 191, 196, 215
Bsp19I CCATGG 1 cut(s) 224
BspACI CCGC 2 cut(s) 354, 357
BspFNI CGCG 1 cut(s) 220
BspLI GGNNCC 1 cut(s) 319
BspPI GGATC 1 cut(s) 204
BspQI GCTCTTC 1 cut(s) 348
BspT107I GGYRCC 1 cut(s) 317
BssECI CCNNGG 2 cut(s) 224, 313
BssMI GATC 3 cut(s) 191, 196, 215
BssT1I CCWWGG 1 cut(s) 224
Bst6I CTCTTC 1 cut(s) 348
BstAPI GCANNNNNTGC 1 cut(s) 245
BstC8I GCNNGC 1 cut(s) 322
BstDSI CCRYGG 1 cut(s) 224
BstEII GGTNACC 1 cut(s) 272
BstF5I GGATG 2 cut(s) 147, 165
BstFNI CGCG 1 cut(s) 220
BstKTI GATC 3 cut(s) 194, 199, 218
BstMBI GATC 3 cut(s) 191, 196, 215
BstMCI CGRYCG 1 cut(s) 218
BstMWI GCNNNNNNNGC 2 cut(s) 226, 245
BstPI GGTNACC 1 cut(s) 272
BstSCI CCNGG 3 cut(s) 312, 313, 331
BstUI CGCG 1 cut(s) 220
BstV1I GCAGC 2 cut(s) 137, 251
BsuI GTATCC 1 cut(s) 410
BtgI CCRYGG 1 cut(s) 224
BtgZI GCGATG 1 cut(s) 309
BtrI CACGTC 1 cut(s) 266
BtsCI GGATG 2 cut(s) 147, 165
BtsI GCAGTG 1 cut(s) 436
BtsIMutI CAGTG 1 cut(s) 436
Cac8I GCNNGC 1 cut(s) 322
Cfr9I CCCGGG 1 cut(s) 313
CseI GACGC 3 cut(s) 56, 209, 313
CviAII CATG 1 cut(s) 225
CviJI RGCY 6 cut(s) 56, 128, 242, 341, 360, 414
CviKI_1 RGCY 6 cut(s) 56, 128, 242, 341, 360, 414
DpnI GATC 3 cut(s) 193, 198, 217
DpnII GATC 3 cut(s) 191, 196, 215
DrdI GACNNNNNNGTC 1 cut(s) 173
DseDI GACNNNNNNGTC 1 cut(s) 173
Eam1104I CTCTTC 1 cut(s) 348
EarI CTCTTC 1 cut(s) 348
Ecl136II GAGCTC 1 cut(s) 341
Eco130I CCWWGG 1 cut(s) 224
Eco24I GRGCYC 1 cut(s) 343
Eco53kI GAGCTC 1 cut(s) 341
Eco88I CYCGRG 2 cut(s) 67, 313
Eco91I GGTNACC 1 cut(s) 272
EcoICRI GAGCTC 1 cut(s) 341
EcoO65I GGTNACC 1 cut(s) 272
EcoT14I CCWWGG 1 cut(s) 224
EcoT38I GRGCYC 1 cut(s) 343
ErhI CCWWGG 1 cut(s) 224
FaeI CATG 1 cut(s) 228
FaiI YATR 3 cut(s) 226, 237, 384
FaqI GGGAC 1 cut(s) 59
FatI CATG 1 cut(s) 224
FblI GTMKAC 1 cut(s) 421
Fnu4HI GCNGC 4 cut(s) 126, 240, 355, 358
FokI GGATG 2 cut(s) 154, 172
FriOI GRGCYC 1 cut(s) 343
Fsp4HI GCNGC 4 cut(s) 126, 240, 355, 358
FspBI CTAG 1 cut(s) 150
GluI GCNGC 4 cut(s) 126, 240, 355, 358
HapII CCGG 3 cut(s) 314, 333, 403
HgaI GACGC 3 cut(s) 56, 209, 313
Hin1II CATG 1 cut(s) 228
HinfI GANTC 2 cut(s) 95, 170
HpaII CCGG 3 cut(s) 314, 333, 403
HphI GGTGA 3 cut(s) 73, 122, 284
Hpy166II GTNNAC 3 cut(s) 64, 289, 422
Hpy188I TCNGA 3 cut(s) 196, 201, 215
Hpy188III TCNNGA 3 cut(s) 150, 189, 347
Hpy8I GTNNAC 3 cut(s) 64, 289, 422
Hpy99I CGWCG 1 cut(s) 170
HpyAV CCTTC 2 cut(s) 338, 456
HpyCH4IV ACGT 1 cut(s) 265
HpyCH4V TGCA 3 cut(s) 125, 239, 248
HpyF10VI GCNNNNNNNGC 2 cut(s) 226, 245
HpySE526I ACGT 1 cut(s) 265
Hsp92II CATG 1 cut(s) 228
Kzo9I GATC 3 cut(s) 191, 196, 215
LguI GCTCTTC 1 cut(s) 348
LmnI GCTCC 2 cut(s) 338, 411
LpnPI CCDG 5 cut(s) 234, 327, 334, 346, 416
Lsp1109I GCAGC 2 cut(s) 137, 251
LweI GCATC 2 cut(s) 112, 155
MaeI CTAG 1 cut(s) 150
MaeII ACGT 1 cut(s) 265
MaeIII GTNAC 1 cut(s) 272
MalI GATC 3 cut(s) 193, 198, 217
MboI GATC 3 cut(s) 191, 196, 215
MboII GAAGA 1 cut(s) 335
MhlI GDGCHC 1 cut(s) 343
MlyI GAGTC 1 cut(s) 104
MnlI CCTC 2 cut(s) 71, 449
MslI CAYNNNNRTG 3 cut(s) 151, 234, 429
MspA1I CMGCKG 1 cut(s) 242
MspI CCGG 3 cut(s) 314, 333, 403
MspR9I CCNGG 3 cut(s) 314, 315, 333
MvnI CGCG 1 cut(s) 220
MwoI GCNNNNNNNGC 2 cut(s) 226, 245
NciI CCSGG 3 cut(s) 314, 315, 333
NcoI CCATGG 1 cut(s) 224
NdeII GATC 3 cut(s) 191, 196, 215
NlaIII CATG 1 cut(s) 228
NlaIV GGNNCC 1 cut(s) 319
NmuCI GTSAC 1 cut(s) 272
OliI CACNNNNGTG 1 cut(s) 429
PciSI GCTCTTC 1 cut(s) 348
PfeI GAWTC 1 cut(s) 170
PkrI GCNGC 4 cut(s) 127, 241, 356, 359
Ple19I CGATCG 1 cut(s) 218
PleI GAGTC 1 cut(s) 103
PpsI GAGTC 1 cut(s) 103
Psp124BI GAGCTC 1 cut(s) 343
PspEI GGTNACC 1 cut(s) 272
PspN4I GGNNCC 1 cut(s) 319
PvuI CGATCG 1 cut(s) 218
PvuII CAGCTG 1 cut(s) 242
RseI CAYNNNNRTG 3 cut(s) 151, 234, 429
SacI GAGCTC 1 cut(s) 343
SapI GCTCTTC 1 cut(s) 348
SatI GCNGC 4 cut(s) 126, 240, 355, 358
Sau3AI GATC 3 cut(s) 191, 196, 215
SchI GAGTC 1 cut(s) 104
ScrFI CCNGG 3 cut(s) 314, 315, 333
SduI GDGCHC 1 cut(s) 343
SetI ASST 8 cut(s) 208, 244, 268, 279, 343, 416, 460, 467
SfaNI GCATC 2 cut(s) 112, 155
SmaI CCCGGG 1 cut(s) 315
SmiMI CAYNNNNRTG 3 cut(s) 151, 234, 429
SsiI CCGC 2 cut(s) 354, 357
SspMI CTAG 1 cut(s) 150
SstI GAGCTC 1 cut(s) 343
StyD4I CCNGG 3 cut(s) 312, 313, 331
StyI CCWWGG 1 cut(s) 224
TaiI ACGT 1 cut(s) 268
TaqI TCGA 3 cut(s) 105, 346, 460
TaqII GACCGA 1 cut(s) 163
TauI GCSGC 2 cut(s) 357, 360
TfiI GAWTC 1 cut(s) 170
TscAI CASTG 1 cut(s) 436
TseFI GTSAC 1 cut(s) 272
TseI GCWGC 2 cut(s) 125, 239
Tsp45I GTSAC 1 cut(s) 272
TspMI CCCGGG 1 cut(s) 313
TspRI CASTG 1 cut(s) 436
XbaI TCTAGA 1 cut(s) 149
XmaI CCCGGG 1 cut(s) 313
XmiI GTMKAC 1 cut(s) 421
XspI CTAG 1 cut(s) 150
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.