RLG00000004631

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0000576
Physical Location & Seq
Forward (+)
60969166 .. 60969744
579 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000004631

Sequence Viewer

Length: 474 bp
ATGTACCCGTCGTTGGTGAGGATGGCATCTAGATGGCGGATGAGCGACGATCCGGTCTTGGGTTGGTCAAGATCAAATCGGAAAGGTCGTTTCCAATCGAGTCCATGGGACGATGGTGTTGTAGCTGCTGATCTTTGGCGTGCCCGTGACCTTGCTGTCGTGGACGATGACGGTGTGCTGGTTTGCTCGGACTCGGGGACTGCTGCTTCTGATGGTGGTGCTCATGGGCATAACAGCTGTAAGTGTGGAGGCAAGGGAGACTATCAAATCATACCGGGGTTGCCAAATTGCAGTGGCGGGCTCTACGACGTCGGTTGTGGCGGTGGCTTACTGATCGGCGGCGACGGTGCTAGACCAGTGGGGTGGAACCTGTGGGGTGCCCTTAACAATTTCTGCTTGGGCCTTCTAGGCTTCACTCTGTTCTGTGGGCCTTACGCACTGCTGGGTTTGGGTGGGCTGGGCCTTCCATTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

158

Amino Acids

16.37

Weight (kDa)

5.48

Isoelectric Point (pI)

50.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 53, 155
AatII GACGTC 1 cut(s) 312
AccB1I GGYRCC 1 cut(s) 377
AciI CCGC 4 cut(s) 37, 297, 321, 339
AclWI GGATC 1 cut(s) 44
AcyI GRCGYC 1 cut(s) 309
AfaI GTAC 1 cut(s) 5
AfiI CCNNNNNNNGG 2 cut(s) 13, 59
AluBI AGCT 2 cut(s) 125, 237
AluI AGCT 2 cut(s) 125, 237
Alw21I GWGCWC 1 cut(s) 223
Alw26I GTCTC 1 cut(s) 252
AlwI GGATC 1 cut(s) 44
Ama87I CYCGRG 1 cut(s) 193
AoxI GGCC 3 cut(s) 400, 428, 460
ApeKI GCWGC 2 cut(s) 125, 203
AspS9I GGNCC 3 cut(s) 400, 428, 460
AsuC2I CCSGG 1 cut(s) 276
AsuHPI GGTGA 1 cut(s) 28
AvaI CYCGRG 1 cut(s) 193
BaeGI GKGCMC 2 cut(s) 145, 382
BanI GGYRCC 1 cut(s) 377
BanII GRGCYC 1 cut(s) 303
Bbv12I GWGCWC 1 cut(s) 223
BbvI GCAGC 2 cut(s) 112, 190
BccI CCATC 4 cut(s) 16, 27, 107, 206
BcnI CCSGG 1 cut(s) 276
BcoDI GTCTC 1 cut(s) 252
BfaI CTAG 3 cut(s) 30, 351, 407
BglI GCCNNNNNGGC 1 cut(s) 408
BisI GCNGC 3 cut(s) 126, 204, 340
BlsI GCNGC 3 cut(s) 127, 205, 341
Bme1390I CCNGG 1 cut(s) 276
BmeT110I CYCGRG 1 cut(s) 193
BmgT120I GGNCC 3 cut(s) 400, 428, 460
BmiI GGNNCC 2 cut(s) 368, 379
BmrFI CCNGG 1 cut(s) 276
BmsI GCATC 1 cut(s) 35
BpuMI CCSGG 1 cut(s) 276
BsaHI GRCGYC 1 cut(s) 309
BsaJI CCNNGG 2 cut(s) 104, 275
BsaWI WCCGGW 1 cut(s) 52
Bsc4I CCNNNNNNNGG 2 cut(s) 13, 59
Bse1I ACTGG 1 cut(s) 356
BseDI CCNNGG 2 cut(s) 104, 275
BseGI GGATG 2 cut(s) 27, 45
BseLI CCNNNNNNNGG 2 cut(s) 13, 59
BseNI ACTGG 1 cut(s) 356
BseSI GKGCMC 2 cut(s) 145, 382
BseXI GCAGC 2 cut(s) 112, 190
BseYI CCCAGC 2 cut(s) 442, 457
BshFI GGCC 3 cut(s) 402, 430, 462
BshNI GGYRCC 1 cut(s) 377
BsiHKAI GWGCWC 1 cut(s) 223
BsiHKCI CYCGRG 1 cut(s) 193
BsiSI CCGG 2 cut(s) 53, 275
BslFI GGGAC 2 cut(s) 122, 211
BslI CCNNNNNNNGG 2 cut(s) 13, 59
BsmAI GTCTC 1 cut(s) 252
BsmFI GGGAC 2 cut(s) 122, 211
BsnI GGCC 3 cut(s) 402, 430, 462
BsoBI CYCGRG 1 cut(s) 193
Bsp1286I GDGCHC 4 cut(s) 145, 223, 303, 382
Bsp143I GATC 4 cut(s) 49, 71, 130, 333
Bsp19I CCATGG 1 cut(s) 104
BspACI CCGC 4 cut(s) 37, 297, 321, 339
BspANI GGCC 3 cut(s) 402, 430, 462
BspLI GGNNCC 2 cut(s) 368, 379
BspPI GGATC 1 cut(s) 44
BspT107I GGYRCC 1 cut(s) 377
BsrI ACTGG 1 cut(s) 356
BssECI CCNNGG 2 cut(s) 104, 275
BssMI GATC 4 cut(s) 49, 71, 130, 333
BssNI GRCGYC 1 cut(s) 309
BssT1I CCWWGG 1 cut(s) 104
Bst4CI ACNGT 2 cut(s) 173, 347
BstACI GRCGYC 1 cut(s) 309
BstC8I GCNNGC 2 cut(s) 141, 299
BstDSI CCRYGG 1 cut(s) 104
BstF5I GGATG 2 cut(s) 27, 45
BstKTI GATC 4 cut(s) 52, 74, 133, 336
BstMAI GTCTC 1 cut(s) 252
BstMBI GATC 4 cut(s) 49, 71, 130, 333
BstMWI GCNNNNNNNGC 1 cut(s) 408
BstSCI CCNGG 1 cut(s) 274
BstSLI GKGCMC 2 cut(s) 145, 382
BstV1I GCAGC 2 cut(s) 112, 190
BstXI CCANNNNNNTGG 1 cut(s) 363
BsuRI GGCC 3 cut(s) 402, 430, 462
BtgI CCRYGG 1 cut(s) 104
BtsCI GGATG 2 cut(s) 27, 45
BtsI GCAGTG 2 cut(s) 298, 437
BtsIMutI CAGTG 3 cut(s) 298, 363, 437
Cac8I GCNNGC 2 cut(s) 141, 299
Cfr13I GGNCC 3 cut(s) 400, 428, 460
Csp6I GTAC 1 cut(s) 4
CviAII CATG 2 cut(s) 105, 224
CviJI RGCY 9 cut(s) 125, 237, 301, 327, 402, 411, 430, 457, 462
CviKI_1 RGCY 9 cut(s) 125, 237, 301, 327, 402, 411, 430, 457, 462
CviQI GTAC 1 cut(s) 4
DpnI GATC 4 cut(s) 51, 73, 132, 335
DpnII GATC 4 cut(s) 49, 71, 130, 333
DrdI GACNNNNNNGTC 2 cut(s) 53, 155
DseDI GACNNNNNNGTC 2 cut(s) 53, 155
EciI GGCGGA 1 cut(s) 52
Eco130I CCWWGG 1 cut(s) 104
Eco24I GRGCYC 1 cut(s) 303
Eco88I CYCGRG 1 cut(s) 193
EcoT14I CCWWGG 1 cut(s) 104
EcoT38I GRGCYC 1 cut(s) 303
ErhI CCWWGG 1 cut(s) 104
FaeI CATG 2 cut(s) 108, 227
FaiI YATR 4 cut(s) 106, 225, 231, 272
FaqI GGGAC 2 cut(s) 122, 211
FatI CATG 2 cut(s) 104, 223
FauI CCCGC 1 cut(s) 290
Fnu4HI GCNGC 3 cut(s) 126, 204, 340
FokI GGATG 2 cut(s) 34, 52
FriOI GRGCYC 1 cut(s) 303
Fsp4HI GCNGC 3 cut(s) 126, 204, 340
FspBI CTAG 3 cut(s) 30, 351, 407
GluI GCNGC 3 cut(s) 126, 204, 340
GsaI CCCAGC 2 cut(s) 446, 461
HaeIII GGCC 3 cut(s) 402, 430, 462
HapII CCGG 2 cut(s) 53, 275
Hin1I GRCGYC 1 cut(s) 309
Hin1II CATG 2 cut(s) 108, 227
HinfI GANTC 2 cut(s) 100, 191
HpaII CCGG 2 cut(s) 53, 275
HphI GGTGA 1 cut(s) 28
Hpy166II GTNNAC 1 cut(s) 163
Hpy188I TCNGA 3 cut(s) 81, 190, 211
Hpy188III TCNNGA 2 cut(s) 30, 69
Hpy8I GTNNAC 1 cut(s) 163
Hpy99I CGWCG 5 cut(s) 13, 50, 311, 314, 347
HpyAV CCTTC 2 cut(s) 413, 473
HpyCH4III ACNGT 2 cut(s) 173, 347
HpyCH4IV ACGT 1 cut(s) 309
HpyCH4V TGCA 1 cut(s) 291
HpyF10VI GCNNNNNNNGC 1 cut(s) 408
HpySE526I ACGT 1 cut(s) 309
Hsp92I GRCGYC 1 cut(s) 309
Hsp92II CATG 2 cut(s) 108, 227
Kzo9I GATC 4 cut(s) 49, 71, 130, 333
LpnPI CCDG 7 cut(s) 66, 164, 288, 369, 383, 428, 443
Lsp1109I GCAGC 2 cut(s) 112, 190
LweI GCATC 1 cut(s) 35
MaeI CTAG 3 cut(s) 30, 351, 407
MaeII ACGT 1 cut(s) 309
MaeIII GTNAC 1 cut(s) 146
MalI GATC 4 cut(s) 51, 73, 132, 335
MboI GATC 4 cut(s) 49, 71, 130, 333
MhlI GDGCHC 4 cut(s) 145, 223, 303, 382
MluCI AATT 2 cut(s) 286, 388
MlyI GAGTC 2 cut(s) 109, 185
MnlI CCTC 2 cut(s) 12, 242
MseI TTAA 1 cut(s) 384
MslI CAYNNNNRTG 1 cut(s) 31
MspA1I CMGCKG 1 cut(s) 237
MspI CCGG 2 cut(s) 53, 275
MspR9I CCNGG 1 cut(s) 276
MwoI GCNNNNNNNGC 1 cut(s) 408
NciI CCSGG 1 cut(s) 276
NcoI CCATGG 1 cut(s) 104
NdeII GATC 4 cut(s) 49, 71, 130, 333
NlaIII CATG 2 cut(s) 108, 227
NlaIV GGNNCC 2 cut(s) 368, 379
NmuCI GTSAC 1 cut(s) 146
PcsI WCGNNNNNNNCGW 1 cut(s) 85
PkrI GCNGC 3 cut(s) 127, 205, 341
PleI GAGTC 2 cut(s) 108, 185
PpsI GAGTC 2 cut(s) 108, 185
PspFI CCCAGC 2 cut(s) 442, 457
PspN4I GGNNCC 2 cut(s) 368, 379
PspPI GGNCC 3 cut(s) 400, 428, 460
PvuII CAGCTG 1 cut(s) 237
RsaI GTAC 1 cut(s) 5
RsaNI GTAC 1 cut(s) 4
RseI CAYNNNNRTG 1 cut(s) 31
SaqAI TTAA 1 cut(s) 384
SatI GCNGC 3 cut(s) 126, 204, 340
Sau3AI GATC 4 cut(s) 49, 71, 130, 333
Sau96I GGNCC 3 cut(s) 400, 428, 460
SchI GAGTC 2 cut(s) 109, 185
ScrFI CCNGG 1 cut(s) 276
SduI GDGCHC 4 cut(s) 145, 223, 303, 382
SetI ASST 6 cut(s) 88, 127, 153, 239, 312, 372
SfaNI GCATC 1 cut(s) 35
SmiMI CAYNNNNRTG 1 cut(s) 31
Sse9I AATT 2 cut(s) 286, 388
SsiI CCGC 4 cut(s) 37, 297, 321, 339
SspMI CTAG 3 cut(s) 30, 351, 407
StyD4I CCNGG 1 cut(s) 274
StyI CCWWGG 1 cut(s) 104
TaaI ACNGT 2 cut(s) 173, 347
TaiI ACGT 1 cut(s) 312
TaqI TCGA 1 cut(s) 98
TasI AATT 2 cut(s) 286, 388
TauI GCSGC 1 cut(s) 342
Tru1I TTAA 1 cut(s) 384
Tru9I TTAA 1 cut(s) 384
TscAI CASTG 3 cut(s) 298, 363, 444
TseFI GTSAC 1 cut(s) 146
TseI GCWGC 2 cut(s) 125, 203
Tsp45I GTSAC 1 cut(s) 146
TspRI CASTG 3 cut(s) 298, 363, 444
XbaI TCTAGA 1 cut(s) 29
XspI CTAG 3 cut(s) 30, 351, 407
ZraI GACGTC 1 cut(s) 310
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.