Rroxscaffold_3G00236180

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000576
Physical Location & Seq
Forward (+)
23366813 .. 23370402
3590 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00236180.1

Sequence Viewer

Length: 321 bp
ATGGAGCAAAGTCCAATCTATTCGGGTTACTCATCCCGAAAGAGAACAAGAAAAAGGGTTAGTTTCGGAGCGGAAAAAGCTACCACTAAAACATATAAAATTCACGAGCTTATTAGTGCAAAGAGGAGTTGTTGCTTGCGATTTGCGAATTTGGATTTGGATCAAGGAATTTATGCACTTGCAACTGTCTCGACTGAATCAGATGAGAGAGTTGTAATGAATCAAACCACATATTACTACACCAACAAGCAATGTCCTTATTCATTGCTTCATAAATATGTTCGGTACCAAGTTTTGGCAAGTAGCTCAGCTGCATCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

106

Amino Acids

12.13

Weight (kDa)

9.54

Isoelectric Point (pI)

56.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 285
AccB1I GGYRCC 1 cut(s) 285
AccB7I CCANNNNNTGG 1 cut(s) 295
AccBSI CCGCTC 1 cut(s) 71
AciI CCGC 1 cut(s) 71
AclWI GGATC 1 cut(s) 168
AcsI RAATTY 3 cut(s) 99, 148, 168
AfaI GTAC 1 cut(s) 287
AfiI CCNNNNNNNGG 1 cut(s) 295
AjuI GAANNNNNNNTTGG 2 cut(s) 140, 172
AluBI AGCT 4 cut(s) 80, 109, 306, 311
AluI AGCT 4 cut(s) 80, 109, 306, 311
Alw26I GTCTC 1 cut(s) 193
AlwI GGATC 1 cut(s) 168
ApeKI GCWGC 1 cut(s) 311
ApoI RAATTY 3 cut(s) 99, 148, 168
Asp718I GGTACC 1 cut(s) 285
BanI GGYRCC 1 cut(s) 285
BauI CACGAG 1 cut(s) 104
BbvI GCAGC 1 cut(s) 298
BcgI CGANNNNNNTGC 2 cut(s) 171, 205
BcoDI GTCTC 1 cut(s) 193
BisI GCNGC 1 cut(s) 312
BlpI GCTNAGC 1 cut(s) 307
BlsI GCNGC 1 cut(s) 313
BmiI GGNNCC 1 cut(s) 287
Bpu1102I GCTNAGC 1 cut(s) 307
BsaBI GATNNNNATC 1 cut(s) 159
Bsc4I CCNNNNNNNGG 1 cut(s) 295
Bse3DI GCAATG 2 cut(s) 257, 263
Bse8I GATNNNNATC 1 cut(s) 159
BseGI GGATG 2 cut(s) 32, 314
BseJI GATNNNNATC 1 cut(s) 159
BseLI CCNNNNNNNGG 1 cut(s) 295
BseMI GCAATG 2 cut(s) 257, 263
BseMII CTCAG 1 cut(s) 321
BseRI GAGGAG 1 cut(s) 139
BseXI GCAGC 1 cut(s) 298
BshNI GGYRCC 1 cut(s) 285
BslI CCNNNNNNNGG 1 cut(s) 295
BsmAI GTCTC 1 cut(s) 193
Bsp143I GATC 1 cut(s) 160
Bsp1720I GCTNAGC 1 cut(s) 307
BspACI CCGC 1 cut(s) 71
BspCNI CTCAG 1 cut(s) 320
BspLI GGNNCC 1 cut(s) 287
BspPI GGATC 1 cut(s) 168
BspT107I GGYRCC 1 cut(s) 285
BsrBI CCGCTC 1 cut(s) 71
BsrDI GCAATG 2 cut(s) 257, 263
BssMI GATC 1 cut(s) 160
BssSI CACGAG 1 cut(s) 104
Bst2BI CACGAG 1 cut(s) 104
Bst4CI ACNGT 1 cut(s) 187
BstC8I GCNNGC 1 cut(s) 137
BstDEI CTNAG 1 cut(s) 307
BstF5I GGATG 2 cut(s) 32, 314
BstKTI GATC 1 cut(s) 163
BstMAI GTCTC 1 cut(s) 193
BstMBI GATC 1 cut(s) 160
BstMWI GCNNNNNNNGC 1 cut(s) 77
BstV1I GCAGC 1 cut(s) 298
BtsCI GGATG 2 cut(s) 32, 314
Cac8I GCNNGC 1 cut(s) 137
Csp6I GTAC 1 cut(s) 286
CviJI RGCY 4 cut(s) 80, 109, 306, 311
CviKI_1 RGCY 4 cut(s) 80, 109, 306, 311
CviQI GTAC 1 cut(s) 286
DdeI CTNAG 1 cut(s) 307
DpnI GATC 1 cut(s) 162
DpnII GATC 1 cut(s) 160
FaiI YATR 6 cut(s) 94, 96, 174, 232, 273, 279
Fnu4HI GCNGC 1 cut(s) 312
FokI GGATG 2 cut(s) 19, 301
Fsp4HI GCNGC 1 cut(s) 312
GluI GCNGC 1 cut(s) 312
HinfI GANTC 2 cut(s) 197, 220
Hpy188I TCNGA 2 cut(s) 68, 202
Hpy188III TCNNGA 3 cut(s) 36, 104, 190
HpyCH4III ACNGT 1 cut(s) 187
HpyCH4V TGCA 4 cut(s) 119, 176, 182, 314
HpyF10VI GCNNNNNNNGC 1 cut(s) 77
HpyF3I CTNAG 1 cut(s) 307
KpnI GGTACC 1 cut(s) 289
Kzo9I GATC 1 cut(s) 160
LmnI GCTCC 2 cut(s) 4, 68
Lsp1109I GCAGC 1 cut(s) 298
MaeIII GTNAC 1 cut(s) 26
MalI GATC 1 cut(s) 162
MbiI CCGCTC 1 cut(s) 71
MboI GATC 1 cut(s) 160
MluCI AATT 3 cut(s) 99, 148, 168
MnlI CCTC 1 cut(s) 117
MslI CAYNNNNRTG 1 cut(s) 276
MspA1I CMGCKG 1 cut(s) 311
MwoI GCNNNNNNNGC 1 cut(s) 77
NdeII GATC 1 cut(s) 160
NlaIV GGNNCC 1 cut(s) 287
PfeI GAWTC 2 cut(s) 197, 220
PflMI CCANNNNNTGG 1 cut(s) 295
PkrI GCNGC 1 cut(s) 313
PspN4I GGNNCC 1 cut(s) 287
PvuII CAGCTG 1 cut(s) 311
RsaI GTAC 1 cut(s) 287
RsaNI GTAC 1 cut(s) 286
RseI CAYNNNNRTG 1 cut(s) 276
SatI GCNGC 1 cut(s) 312
Sau3AI GATC 1 cut(s) 160
SetI ASST 4 cut(s) 82, 111, 308, 313
SmiMI CAYNNNNRTG 1 cut(s) 276
Sse9I AATT 3 cut(s) 99, 148, 168
SsiI CCGC 1 cut(s) 71
TaaI ACNGT 1 cut(s) 187
TaqI TCGA 1 cut(s) 191
TasI AATT 3 cut(s) 99, 148, 168
TfiI GAWTC 2 cut(s) 197, 220
TseI GCWGC 1 cut(s) 311
TspDTI ATGAA 3 cut(s) 233, 252, 260
Van91I CCANNNNNTGG 1 cut(s) 295
XapI RAATTY 3 cut(s) 99, 148, 168
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.