Rh2AG264600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0000576
Physical Location & Seq
Reverse (-)
30805121 .. 30805831
711 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG264600.1

Sequence Viewer

Length: 711 bp
ATGGCAGATTTTGGTCTGCTTATTCTTTTCTTGATTGCTTTGGGGAATATTGAGGCGGTCTTGAGTTCGGGGCATGGAGGCATTGTTGTCTCTGCCTTCATGCTAGATGGTGATATGAACAATGCGGCCTCGTGGGAGGGGATGACATCTAGATGGCAATTGAGCAGCGATCCGGTCTTGGTTTGGTCAAGATCAGATCGGAAAGGTCGATTCCGATCGAGTCCATGGAACGACGGTGTACTTGTTGCAGGGGTTGATCCTTGGAGGGTCGGAGATCTTTCTATCCCGGATGGTGATGGAGTGCTGGTTTGCTCGGACCCAGGGGCTATTGCTTCCGATGAGGGTGCTTCTGGGGATAACGGCTGCAAGTATTGCGGTAAGTGCGGCGGTCGAAACAAATCAGGGTTTCTGAGGATGAGGGCGGATCTGCTTTCTTCCGGCCCGGGCTCTTCGGTGGCGGGGATGATGGTGTGGCTCTGCTTATCGAAGAAGATTATCTCTGATGGTGATGCTGCCTGGTGCAGCGATGGGTTCTACATCATCGATGGTGCCGGCGGTCATGGTGATGAGGTCGAGTGGCCATGGGTCAGATGCGGCATCGGTGTTTTCCAGATTGGGTTGTCTCCAACTGTGGGCGTAAGCGGTGGCGTCACAAGTGGCAGGTACAAACTCAGTGGTAGCTTTTGCACTGGTGTTGATCCTGACGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

236

Amino Acids

24.57

Weight (kDa)

4.66

Isoelectric Point (pI)

27.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 651
AccB1I GGYRCC 1 cut(s) 548
AclWI GGATC 4 cut(s) 164, 251, 432, 692
AcoI YGGCCR 1 cut(s) 578
AcyI GRCGYC 1 cut(s) 648
AfaI GTAC 2 cut(s) 240, 665
AfiI CCNNNNNNNGG 1 cut(s) 632
AjnI CCWGG 2 cut(s) 319, 515
AluBI AGCT 1 cut(s) 681
AluI AGCT 1 cut(s) 681
Alw26I GTCTC 2 cut(s) 94, 627
AlwI GGATC 4 cut(s) 164, 251, 432, 692
Ama87I CYCGRG 1 cut(s) 442
AoxI GGCC 3 cut(s) 126, 439, 578
ApeKI GCWGC 4 cut(s) 165, 363, 512, 522
AspS9I GGNCC 2 cut(s) 316, 440
AsuC2I CCSGG 3 cut(s) 287, 443, 444
AsuHPI GGTGA 4 cut(s) 122, 305, 518, 575
AvaI CYCGRG 1 cut(s) 442
AvaII GGWCC 1 cut(s) 316
BalI TGGCCA 1 cut(s) 580
BanI GGYRCC 1 cut(s) 548
BanII GRGCYC 1 cut(s) 449
BauI CACGAG 1 cut(s) 130
BbvI GCAGC 4 cut(s) 177, 350, 499, 534
BccI CCATC 8 cut(s) 101, 147, 284, 290, 460, 497, 521, 539
BceAI ACGGC 1 cut(s) 376
BcgI CGANNNNNNTGC 2 cut(s) 326, 360
BciT130I CCWGG 2 cut(s) 321, 517
BcnI CCSGG 3 cut(s) 287, 443, 444
BcoDI GTCTC 2 cut(s) 94, 627
BfaI CTAG 2 cut(s) 104, 150
BfuAI ACCTGC 1 cut(s) 651
BglII AGATCT 1 cut(s) 274
BisI GCNGC 7 cut(s) 126, 166, 364, 385, 513, 523, 595
BlsI GCNGC 7 cut(s) 127, 167, 365, 386, 514, 524, 596
Bme1390I CCNGG 5 cut(s) 287, 321, 443, 444, 517
Bme18I GGWCC 1 cut(s) 316
BmeT110I CYCGRG 1 cut(s) 442
BmgT120I GGNCC 2 cut(s) 316, 440
BmiI GGNNCC 2 cut(s) 318, 550
BmrFI CCNGG 5 cut(s) 287, 321, 443, 444, 517
BmsI GCATC 3 cut(s) 499, 581, 606
BpuEI CTTGAG 1 cut(s) 82
BpuMI CCSGG 3 cut(s) 287, 443, 444
Bsa29I ATCGAT 1 cut(s) 543
BsaBI GATNNNNATC 1 cut(s) 214
BsaHI GRCGYC 1 cut(s) 648
BsaJI CCNNGG 6 cut(s) 224, 260, 319, 320, 442, 581
BsaWI WCCGGW 1 cut(s) 172
BsaXI ACNNNNNCTCC 4 cut(s) 69, 99, 291, 321
Bsc4I CCNNNNNNNGG 1 cut(s) 632
Bse118I RCCGGY 1 cut(s) 551
Bse1I ACTGG 1 cut(s) 694
Bse8I GATNNNNATC 1 cut(s) 214
BseBI CCWGG 2 cut(s) 321, 517
BseCI ATCGAT 1 cut(s) 543
BseDI CCNNGG 6 cut(s) 224, 260, 319, 320, 442, 581
BseGI GGATG 4 cut(s) 147, 295, 420, 468
BseJI GATNNNNATC 1 cut(s) 214
BseLI CCNNNNNNNGG 1 cut(s) 632
BseMII CTCAG 2 cut(s) 401, 685
BseNI ACTGG 1 cut(s) 694
BseXI GCAGC 4 cut(s) 177, 350, 499, 534
BsgI GTGCAG 1 cut(s) 541
Bsh1285I CGRYCG 2 cut(s) 218, 391
BshFI GGCC 3 cut(s) 128, 441, 580
BshNI GGYRCC 1 cut(s) 548
BshVI ATCGAT 1 cut(s) 543
BsiEI CGRYCG 2 cut(s) 218, 391
BsiHKCI CYCGRG 1 cut(s) 442
BsiSI CCGG 5 cut(s) 173, 287, 438, 443, 552
BslI CCNNNNNNNGG 1 cut(s) 632
BsmAI GTCTC 2 cut(s) 94, 627
BsnI GGCC 3 cut(s) 128, 441, 580
BsoBI CYCGRG 1 cut(s) 442
Bsp1286I GDGCHC 1 cut(s) 449
Bsp143I GATC 8 cut(s) 169, 191, 196, 215, 256, 274, 424, 697
Bsp19I CCATGG 2 cut(s) 224, 581
BspANI GGCC 3 cut(s) 128, 441, 580
BspCNI CTCAG 2 cut(s) 402, 684
BspDI ATCGAT 1 cut(s) 543
BspLI GGNNCC 2 cut(s) 318, 550
BspMI ACCTGC 1 cut(s) 651
BspPI GGATC 4 cut(s) 164, 251, 432, 692
BspQI GCTCTTC 1 cut(s) 454
BspT107I GGYRCC 1 cut(s) 548
BsrFI RCCGGY 1 cut(s) 551
BsrI ACTGG 1 cut(s) 694
BssAI RCCGGY 1 cut(s) 551
BssECI CCNNGG 6 cut(s) 224, 260, 319, 320, 442, 581
BssMI GATC 8 cut(s) 169, 191, 196, 215, 256, 274, 424, 697
BssNI GRCGYC 1 cut(s) 648
BssSI CACGAG 1 cut(s) 130
BssT1I CCWWGG 3 cut(s) 224, 260, 581
Bst2BI CACGAG 1 cut(s) 130
Bst2UI CCWGG 2 cut(s) 321, 517
Bst4CI ACNGT 2 cut(s) 236, 631
Bst6I CTCTTC 1 cut(s) 454
BstACI GRCGYC 1 cut(s) 648
BstAPI GCANNNNNTGC 1 cut(s) 372
BstC8I GCNNGC 1 cut(s) 553
BstDEI CTNAG 3 cut(s) 410, 671, 708
BstDSI CCRYGG 2 cut(s) 224, 581
BstF5I GGATG 4 cut(s) 147, 295, 420, 468
BstKTI GATC 8 cut(s) 172, 194, 199, 218, 259, 277, 427, 700
BstMAI GTCTC 2 cut(s) 94, 627
BstMBI GATC 8 cut(s) 169, 191, 196, 215, 256, 274, 424, 697
BstMCI CGRYCG 2 cut(s) 218, 391
BstMWI GCNNNNNNNGC 2 cut(s) 372, 381
BstNI CCWGG 2 cut(s) 321, 517
BstSCI CCNGG 5 cut(s) 285, 319, 441, 442, 515
BstV1I GCAGC 4 cut(s) 177, 350, 499, 534
BstX2I RGATCY 2 cut(s) 274, 424
BstYI RGATCY 2 cut(s) 274, 424
Bsu15I ATCGAT 1 cut(s) 543
BsuRI GGCC 3 cut(s) 128, 441, 580
BsuTUI ATCGAT 1 cut(s) 543
BtgI CCRYGG 2 cut(s) 224, 581
BtgZI GCGATG 1 cut(s) 540
BtsCI GGATG 4 cut(s) 147, 295, 420, 468
BtsIMutI CAGTG 2 cut(s) 679, 687
BveI ACCTGC 1 cut(s) 651
Cac8I GCNNGC 1 cut(s) 553
Cfr10I RCCGGY 1 cut(s) 551
Cfr13I GGNCC 2 cut(s) 316, 440
Cfr9I CCCGGG 1 cut(s) 442
ClaI ATCGAT 1 cut(s) 543
CseI GACGC 1 cut(s) 637
Csp6I GTAC 2 cut(s) 239, 664
CspCI CAANNNNNGTGG 2 cut(s) 655, 690
CviAII CATG 5 cut(s) 74, 100, 225, 560, 582
CviJI RGCY 8 cut(s) 128, 326, 363, 441, 447, 475, 580, 681
CviKI_1 RGCY 8 cut(s) 128, 326, 363, 441, 447, 475, 580, 681
CviQI GTAC 2 cut(s) 239, 664
DdeI CTNAG 3 cut(s) 410, 671, 708
DpnI GATC 8 cut(s) 171, 193, 198, 217, 258, 276, 426, 699
DpnII GATC 8 cut(s) 169, 191, 196, 215, 256, 274, 424, 697
EaeI YGGCCR 1 cut(s) 578
Eam1104I CTCTTC 1 cut(s) 454
EarI CTCTTC 1 cut(s) 454
EciI GGCGGA 1 cut(s) 437
Eco130I CCWWGG 3 cut(s) 224, 260, 581
Eco24I GRGCYC 1 cut(s) 449
Eco47I GGWCC 1 cut(s) 316
Eco88I CYCGRG 1 cut(s) 442
EcoRII CCWGG 2 cut(s) 319, 515
EcoT14I CCWWGG 3 cut(s) 224, 260, 581
EcoT38I GRGCYC 1 cut(s) 449
ErhI CCWWGG 3 cut(s) 224, 260, 581
FaeI CATG 5 cut(s) 77, 103, 228, 563, 585
FaiI YATR 6 cut(s) 75, 101, 116, 226, 561, 583
FatI CATG 5 cut(s) 73, 99, 224, 559, 581
FauI CCCGC 1 cut(s) 451
Fnu4HI GCNGC 7 cut(s) 126, 166, 364, 385, 513, 523, 595
FokI GGATG 4 cut(s) 154, 302, 427, 475
FriOI GRGCYC 1 cut(s) 449
Fsp4HI GCNGC 7 cut(s) 126, 166, 364, 385, 513, 523, 595
FspBI CTAG 2 cut(s) 104, 150
GluI GCNGC 7 cut(s) 126, 166, 364, 385, 513, 523, 595
HaeIII GGCC 3 cut(s) 128, 441, 580
HapII CCGG 5 cut(s) 173, 287, 438, 443, 552
HgaI GACGC 1 cut(s) 637
Hin1I GRCGYC 1 cut(s) 648
Hin1II CATG 5 cut(s) 77, 103, 228, 563, 585
HinfI GANTC 2 cut(s) 210, 220
HpaII CCGG 5 cut(s) 173, 287, 438, 443, 552
HphI GGTGA 4 cut(s) 122, 305, 518, 575
Hpy166II GTNNAC 1 cut(s) 239
Hpy188I TCNGA 9 cut(s) 196, 201, 215, 272, 316, 337, 411, 502, 590
Hpy188III TCNNGA 6 cut(s) 31, 61, 150, 189, 610, 701
Hpy8I GTNNAC 1 cut(s) 239
Hpy99I CGWCG 1 cut(s) 236
HpyAV CCTTC 1 cut(s) 106
HpyCH4III ACNGT 2 cut(s) 236, 631
HpyCH4V TGCA 4 cut(s) 248, 366, 522, 687
HpyF10VI GCNNNNNNNGC 2 cut(s) 372, 381
HpyF3I CTNAG 3 cut(s) 410, 671, 708
Hsp92I GRCGYC 1 cut(s) 648
Hsp92II CATG 5 cut(s) 77, 103, 228, 563, 585
KroI GCCGGC 1 cut(s) 551
KroNI GCCGGC 1 cut(s) 553
Kzo9I GATC 8 cut(s) 169, 191, 196, 215, 256, 274, 424, 697
LguI GCTCTTC 1 cut(s) 454
Lsp1109I GCAGC 4 cut(s) 177, 350, 499, 534
LweI GCATC 3 cut(s) 499, 581, 606
MaeI CTAG 2 cut(s) 104, 150
MaeIII GTNAC 1 cut(s) 649
MalI GATC 8 cut(s) 171, 193, 198, 217, 258, 276, 426, 699
MboI GATC 8 cut(s) 169, 191, 196, 215, 256, 274, 424, 697
MboII GAAGA 4 cut(s) 426, 441, 499, 502
MfeI CAATTG 1 cut(s) 158
MflI RGATCY 2 cut(s) 274, 424
MhlI GDGCHC 1 cut(s) 449
MlsI TGGCCA 1 cut(s) 580
MluCI AATT 1 cut(s) 158
MluNI TGGCCA 1 cut(s) 580
MlyI GAGTC 1 cut(s) 229
MmeI TCCRAC 2 cut(s) 250, 650
MnlI CCTC 9 cut(s) 46, 71, 130, 139, 258, 334, 405, 411, 562
Mox20I TGGCCA 1 cut(s) 580
MroNI GCCGGC 1 cut(s) 551
MscI TGGCCA 1 cut(s) 580
MslI CAYNNNNRTG 2 cut(s) 151, 564
Msp20I TGGCCA 1 cut(s) 580
MspI CCGG 5 cut(s) 173, 287, 438, 443, 552
MspR9I CCNGG 5 cut(s) 287, 321, 443, 444, 517
MunI CAATTG 1 cut(s) 158
MvaI CCWGG 2 cut(s) 321, 517
MwoI GCNNNNNNNGC 2 cut(s) 372, 381
NaeI GCCGGC 1 cut(s) 553
NciI CCSGG 3 cut(s) 287, 443, 444
NcoI CCATGG 2 cut(s) 224, 581
NdeII GATC 8 cut(s) 169, 191, 196, 215, 256, 274, 424, 697
NgoMIV GCCGGC 1 cut(s) 551
NlaIII CATG 5 cut(s) 77, 103, 228, 563, 585
NlaIV GGNNCC 2 cut(s) 318, 550
NmuCI GTSAC 1 cut(s) 649
PasI CCCWGGG 1 cut(s) 320
PciSI GCTCTTC 1 cut(s) 454
PcsI WCGNNNNNNNCGW 1 cut(s) 205
PdiI GCCGGC 1 cut(s) 553
PfeI GAWTC 1 cut(s) 210
PfoI TCCNGGA 1 cut(s) 285
PkrI GCNGC 7 cut(s) 127, 167, 365, 386, 514, 524, 596
Ple19I CGATCG 1 cut(s) 218
PleI GAGTC 1 cut(s) 228
PpsI GAGTC 1 cut(s) 228
Psp6I CCWGG 2 cut(s) 319, 515
PspGI CCWGG 2 cut(s) 319, 515
PspN4I GGNNCC 2 cut(s) 318, 550
PspPI GGNCC 2 cut(s) 316, 440
PsuI RGATCY 2 cut(s) 274, 424
PvuI CGATCG 1 cut(s) 218
RsaI GTAC 2 cut(s) 240, 665
RsaNI GTAC 2 cut(s) 239, 664
RseI CAYNNNNRTG 2 cut(s) 151, 564
SapI GCTCTTC 1 cut(s) 454
SatI GCNGC 7 cut(s) 126, 166, 364, 385, 513, 523, 595
Sau3AI GATC 8 cut(s) 169, 191, 196, 215, 256, 274, 424, 697
Sau96I GGNCC 2 cut(s) 316, 440
SchI GAGTC 1 cut(s) 229
ScrFI CCNGG 5 cut(s) 287, 321, 443, 444, 517
SduI GDGCHC 1 cut(s) 449
SetI ASST 4 cut(s) 208, 573, 665, 683
SfaNI GCATC 3 cut(s) 499, 581, 606
SinI GGWCC 1 cut(s) 316
SmaI CCCGGG 1 cut(s) 444
SmiMI CAYNNNNRTG 2 cut(s) 151, 564
SmlI CTYRAG 1 cut(s) 61
SmoI CTYRAG 1 cut(s) 61
SrfI GCCCGGGC 1 cut(s) 444
Sse9I AATT 1 cut(s) 158
SspI AATATT 1 cut(s) 49
SspMI CTAG 2 cut(s) 104, 150
StyD4I CCNGG 5 cut(s) 285, 319, 441, 442, 515
StyI CCWWGG 3 cut(s) 224, 260, 581
TaaI ACNGT 2 cut(s) 236, 631
TaqI TCGA 6 cut(s) 208, 218, 391, 485, 543, 573
TasI AATT 1 cut(s) 158
TatI WGTACW 1 cut(s) 238
TauI GCSGC 3 cut(s) 128, 387, 597
TfiI GAWTC 1 cut(s) 210
TscAI CASTG 2 cut(s) 679, 694
TseFI GTSAC 1 cut(s) 649
TseI GCWGC 4 cut(s) 165, 363, 512, 522
Tsp45I GTSAC 1 cut(s) 649
TspDTI ATGAA 2 cut(s) 88, 131
TspMI CCCGGG 1 cut(s) 442
TspRI CASTG 2 cut(s) 679, 694
VpaK11BI GGWCC 1 cut(s) 316
XbaI TCTAGA 1 cut(s) 149
XmaI CCCGGG 1 cut(s) 442
XspI CTAG 2 cut(s) 104, 150
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.