FvH4_1g25744

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000385
Physical Location & Seq
Forward (+)
17665929 .. 17666532
604 bp
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UTR
Exon/CDS
Intron
FvH4_1g25744.t1

Sequence Viewer

Length: 474 bp
ATGAAGATGTGGGACGAGTTCCTACAAGGCAAGAAATTCGACCTCTACACCAAAGGTTTGGAGGGACTTTCTCACACCAAGTGTGTTTCCTTCATTTCGAAGCCGGAGTTCAAAGTACCAAGAGATGAAGCGTGCTATGGAGGATGGACCGAGCAAGAGAAGAAAAAGCTTGCGGGTTGTTGGCCAGCATGGGGAGAACCAGAAAATTTGAACGAGGTTAAAGTTGGCCAGTCATTGTATGACATCCGTAGTGAAAAATCTCAATGCGCTCAGCAGAGGTTAAAGGAGAGAGAGAAGCACACTTGGAAAGAATTCCCCAAGTCATTGACAGCCTATGATGGCATAGAAGGCAGCAAAAAAGATGTAGCCAAGTGGGAAAGAGCAATGGCAGCAAGGAAAGAGTTGATGTTGTTGACCCGTTGGCAACGAGGACGTTGCCAAAATCAAGCGGGGGGTGGTTTGTTACACCCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

158

Amino Acids

18.2

Weight (kDa)

9.16

Isoelectric Point (pI)

38.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000385)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g23713 FvH4_1g25744 FvH4_2g00261 FvH4_2g00262 FvH4_2g15681 FvH4_2g17851 FvH4_2g35550 FvH4_3g05280 FvH4_3g10531 FvH4_3g25910 FvH4_3g28953 FvH4_3g33371 FvH4_3g33536 FvH4_3g36090 FvH4_4g03471 FvH4_4g03480 FvH4_4g06701 FvH4_4g19351 FvH4_4g34281 FvH4_5g00040 FvH4_5g03811 FvH4_5g03812 FvH4_5g11822 FvH4_5g30921 FvH4_5g31701 FvH4_6g12161 FvH4_6g15222 FvH4_6g15223 FvH4_6g17701 FvH4_6g17710 FvH4_6g19301 FvH4_6g33011 FvH4_6g34501 FvH4_6g50161 FvH4_7g04111 FvH4_7g04120 FvH4_7g04121 FvH4_7g04122 FvH4_7g04123 FvH4_7g28231 FvH4_c7g00010
malus_domestica MD12G1084200.v1.1
prunus_persica Prupe.1G206200_v2.0.a1 Prupe.8G085600_v2.0.a1
pyrus_communis pycom01g11080 pycom02g20500 pycom09g18370 pycom12555g00210 pycom13g23120 pycom14g10590 pycom16g17620 pycom16g22750
rosa_chinensis RchiOBHm_Chr2g0137481 RchiOBHm_Chr6g0251961 RchiOBHm_Chr7g0185821
rosa_laevigata RLG00000005585 RLG00000010281 RLG00000010912 RLG00000030342 RLG00000034281
rosa_multiflora Rmu_sc0000096.1_g000010 Rmu_sc0002481.1_g000045 Rmu_sc0003598.1_g000009 Rmu_sc0003863.1_g000019 Rmu_sc0003973.1_g000002 Rmu_sc0004823.1_g000050 Rmu_sc0005621.1_g000007 Rmu_sc0006537.1_g000030 Rmu_sc0006608.1_g000014 Rmu_sc0008506.1_g000007 Rmu_sc0014428.1_g000001 Rmu_sc0035437.1_g000001 Rmu_ssc0000396.1_g000022
rosa_roxburghii Rroxscaffold_175G00432300 Rroxscaffold_17G00435390 Rroxscaffold_27G00446590 Rroxscaffold_29G00441820 Rroxscaffold_31G00438110 Rroxscaffold_32G00442750 Rroxscaffold_33G00439810 Rroxscaffold_37G00445160 Rroxscaffold_4G00306500 Rroxscaffold_4G00327700 Rroxscaffold_4G00332630 Rroxscaffold_52G00439360 Rroxscaffold_63G00444420 Rroxscaffold_76G00448580 Rroxscaffold_7G00156270
rosa_rugosa Rorug03G0295200
rosa_samantha Rh1BG433700 Rh1CG115400 Rh2AG676300 Rh2CG341800 Rh2DG381400 Rh3BG370100 Rh3BG370200 Rh4AG441600 Rh4BG076500 Rh4BG107400 Rh5BG005600 Rh6BG010100 Rh7BG000200
rosa_wichuraiana Rw0G003820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 173, 449
AcoI YGGCCR 2 cut(s) 182, 226
AcsI RAATTY 3 cut(s) 35, 205, 311
AdeI CACNNNGTG 1 cut(s) 81
AfaI GTAC 1 cut(s) 117
AfiI CCNNNNNNNGG 1 cut(s) 191
AgsI TTSAA 2 cut(s) 112, 211
AluBI AGCT 1 cut(s) 169
AluI AGCT 1 cut(s) 169
AoxI GGCC 2 cut(s) 182, 226
ApeKI GCWGC 2 cut(s) 351, 389
ApoI RAATTY 3 cut(s) 35, 205, 311
Asp700I GAANNNNTTC 1 cut(s) 311
AspLEI GCGC 1 cut(s) 269
AspS9I GGNCC 1 cut(s) 147
AsuII TTCGAA 1 cut(s) 98
AvaII GGWCC 1 cut(s) 147
BalI TGGCCA 2 cut(s) 184, 228
BbvI GCAGC 2 cut(s) 363, 401
BccI CCATC 2 cut(s) 138, 332
BcgI CGANNNNNNTGC 4 cut(s) 19, 53, 417, 451
BisI GCNGC 2 cut(s) 352, 390
BlpI GCTNAGC 1 cut(s) 270
BlsI GCNGC 2 cut(s) 353, 391
Bme18I GGWCC 1 cut(s) 147
BmgT120I GGNCC 1 cut(s) 147
Bpu1102I GCTNAGC 1 cut(s) 270
Bpu14I TTCGAA 1 cut(s) 98
Bsc4I CCNNNNNNNGG 1 cut(s) 191
Bse1I ACTGG 1 cut(s) 229
Bse3DI GCAATG 1 cut(s) 390
BseGI GGATG 2 cut(s) 149, 243
BseLI CCNNNNNNNGG 1 cut(s) 191
BseMI GCAATG 1 cut(s) 390
BseMII CTCAG 1 cut(s) 284
BseNI ACTGG 1 cut(s) 229
BseXI GCAGC 2 cut(s) 363, 401
BshFI GGCC 2 cut(s) 184, 228
BsiSI CCGG 1 cut(s) 104
BslFI GGGAC 2 cut(s) 26, 78
BslI CCNNNNNNNGG 1 cut(s) 191
BsmFI GGGAC 2 cut(s) 26, 78
BsnI GGCC 2 cut(s) 184, 228
Bsp119I TTCGAA 1 cut(s) 98
Bsp1720I GCTNAGC 1 cut(s) 270
BspACI CCGC 2 cut(s) 173, 449
BspANI GGCC 2 cut(s) 184, 228
BspCNI CTCAG 1 cut(s) 283
BspT104I TTCGAA 1 cut(s) 98
BsrDI GCAATG 1 cut(s) 390
BsrI ACTGG 1 cut(s) 229
BstBI TTCGAA 1 cut(s) 98
BstC8I GCNNGC 3 cut(s) 133, 171, 186
BstDEI CTNAG 1 cut(s) 270
BstF5I GGATG 2 cut(s) 149, 243
BstHHI GCGC 1 cut(s) 269
BstMWI GCNNNNNNNGC 2 cut(s) 348, 389
BstV1I GCAGC 2 cut(s) 363, 401
BstXI CCANNNNNNTGG 1 cut(s) 58
BsuRI GGCC 2 cut(s) 184, 228
BtsCI GGATG 2 cut(s) 149, 243
Cac8I GCNNGC 3 cut(s) 133, 171, 186
CfoI GCGC 1 cut(s) 269
Cfr13I GGNCC 1 cut(s) 147
Csp6I GTAC 1 cut(s) 116
CviAII CATG 1 cut(s) 189
CviJI RGCY 6 cut(s) 103, 169, 184, 228, 332, 368
CviKI_1 RGCY 6 cut(s) 103, 169, 184, 228, 332, 368
CviQI GTAC 1 cut(s) 116
DdeI CTNAG 1 cut(s) 270
DraIII CACNNNGTG 1 cut(s) 81
EaeI YGGCCR 2 cut(s) 182, 226
Eco47I GGWCC 1 cut(s) 147
EcoRI GAATTC 1 cut(s) 311
FaeI CATG 1 cut(s) 192
FaiI YATR 5 cut(s) 138, 190, 240, 336, 344
FaqI GGGAC 2 cut(s) 26, 78
FatI CATG 1 cut(s) 188
FauI CCCGC 2 cut(s) 166, 442
Fnu4HI GCNGC 2 cut(s) 352, 390
FokI GGATG 2 cut(s) 156, 230
Fsp4HI GCNGC 2 cut(s) 352, 390
GlaI GCGC 1 cut(s) 268
GluI GCNGC 2 cut(s) 352, 390
HaeIII GGCC 2 cut(s) 184, 228
HapII CCGG 1 cut(s) 104
HhaI GCGC 1 cut(s) 269
Hin1II CATG 1 cut(s) 192
Hin6I GCGC 1 cut(s) 267
HinP1I GCGC 1 cut(s) 267
HincII GTYRAC 1 cut(s) 414
HindII GTYRAC 1 cut(s) 414
HindIII AAGCTT 1 cut(s) 167
HpaII CCGG 1 cut(s) 104
Hpy166II GTNNAC 1 cut(s) 414
Hpy8I GTNNAC 1 cut(s) 414
HpyAV CCTTC 2 cut(s) 100, 341
HpyCH4IV ACGT 1 cut(s) 433
HpyF10VI GCNNNNNNNGC 2 cut(s) 348, 389
HpyF3I CTNAG 1 cut(s) 270
HpySE526I ACGT 1 cut(s) 433
Hsp92II CATG 1 cut(s) 192
HspAI GCGC 1 cut(s) 267
LpnPI CCDG 4 cut(s) 117, 198, 213, 242
Lsp1109I GCAGC 2 cut(s) 363, 401
MaeII ACGT 1 cut(s) 433
MaeIII GTNAC 1 cut(s) 462
MboII GAAGA 2 cut(s) 16, 172
MlsI TGGCCA 2 cut(s) 184, 228
MluCI AATT 3 cut(s) 35, 205, 311
MluNI TGGCCA 2 cut(s) 184, 228
MnlI CCTC 6 cut(s) 53, 55, 134, 208, 270, 422
Mox20I TGGCCA 2 cut(s) 184, 228
MroXI GAANNNNTTC 1 cut(s) 311
MscI TGGCCA 2 cut(s) 184, 228
MseI TTAA 2 cut(s) 219, 281
Msp20I TGGCCA 2 cut(s) 184, 228
MspI CCGG 1 cut(s) 104
MwoI GCNNNNNNNGC 2 cut(s) 348, 389
NlaIII CATG 1 cut(s) 192
NspV TTCGAA 1 cut(s) 98
PdmI GAANNNNTTC 1 cut(s) 311
PkrI GCNGC 2 cut(s) 353, 391
PspPI GGNCC 1 cut(s) 147
RsaI GTAC 1 cut(s) 117
RsaNI GTAC 1 cut(s) 116
SaqAI TTAA 2 cut(s) 219, 281
SatI GCNGC 2 cut(s) 352, 390
Sau96I GGNCC 1 cut(s) 147
SetI ASST 6 cut(s) 45, 58, 171, 219, 281, 436
SfuI TTCGAA 1 cut(s) 98
SinI GGWCC 1 cut(s) 147
Sse9I AATT 3 cut(s) 35, 205, 311
SsiI CCGC 2 cut(s) 173, 449
TaiI ACGT 1 cut(s) 436
TaqI TCGA 2 cut(s) 39, 98
TaqII GACCGA 1 cut(s) 164
TasI AATT 3 cut(s) 35, 205, 311
Tru1I TTAA 2 cut(s) 219, 281
Tru9I TTAA 2 cut(s) 219, 281
TseI GCWGC 2 cut(s) 351, 389
TspDTI ATGAA 3 cut(s) 17, 82, 141
TspGWI ACGGA 1 cut(s) 236
VpaK11BI GGWCC 1 cut(s) 147
XapI RAATTY 3 cut(s) 35, 205, 311
XmnI GAANNNNTTC 1 cut(s) 311
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.