FvH4_6g12161

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000385
Physical Location & Seq
Forward (+)
7354279 .. 7356022
1744 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g12161.t1

Sequence Viewer

Length: 1287 bp
ATGTCCGGAGAAGGAGTTTCGGTGGAGCAAGCTGTTGTTGGCGCCAAGAGGAGCCACAAGGAAGTACATGCTGCCTTTGATGCACGGCTCGGAAAGGTGGAATCGGCCGTGGTCGAGTTTGACACTCGACTTGACGATGACGTTGTGACAAAGGGGGATCTCGCAGCCATGGTGGAAGAGTTGCGAGAGCAAATGCACGGCGCTCTCAACATTATGGCAGATAGGATCCGAGGGGAGGTCCGAGACAAGCTTGATCAAATGTCCGCTGAGCTCACAGCCCTCCGAGAGGAAGTGAAGGAGGTCAAGGGAGATTGGGTGCTATGCAAAGAGGCTGCACTTAACAAGTCGCAAGGGCCAAAGGAGACGAAGGCATTGGACTCTTTCAAACCCAAATCTTTTAGTGGGAAGAGGGAAGCTAAAGAGCTTGACACCTTTCTATGGAACATGGGAAGGTACTTCAAGTATCTAAAGCTTGAGGATGACGAGTCCAAAATTTCAACGACTACCATGTTTCTAGCCGACAATGCCCTTATGTGGTGGCGTCGAAGGAGTATGGAAATCGAGCAAGGCGACACTAAGTTCAAGGGGAAGAAGGTTAGCTATGAGAAGAGTGGGGGAGACGTGCCAAAGCCGAAGGAGAAGCCCGAGTCAAGCTACAAGCCGAAGGTGAAGAGGTTCGAGAAGCACGACAAGTCCGCAAACAAGACTTGGGAAATGAAGTGCTACTTATGCGACGGCCCTCATATGATGCGCGATTGCCCTCAAAAGAAGGCACTCAAAGCCATGACCTTGCAAGAGCATAGGATCGAGGAAGAGGAGGAGGATGCAGCAAGGATGGGATGCATCCGGTTACTCAATGCCTTGAAGGCTAGCGTCCCTCAACCAAGGCGACAAGCGGAAGGTGGATCGCTTTACATCGATGTCAAGACAAAAGACACGATGATTCGTGCCTTGGTGGATTGCGGAGCAACTCATAACTTCATGACGTCGGAAGAAGCAAGGAAGCTTGGCCTCCGAGTCACGAAGGAATCGGGCAGTGTGAAGACGGTGAATACACCTGCCACGCCCATTGTTGGAGTAGCACGCGATGTGGAGGTTCACATCGGCGCTTGGAAAGGGAAAGTCGATTTCACCGTGGTCAAGATGGATGACTATGGCATGGTAATCGGCCTTGAATTCATGGACAAGGCAAGCAAGGGAGAAGACAAAGGCTCTATCGGCCATGCAACTCGCCAAAGCTTGGAAGAAGGGCGAGCCGACATTCCTAGCAACCCTCAAGATGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Asp_protease_2 Chromo RVT_1 Retrotrans_gag gag-asp_proteas rve

Protein Analysis

429

Amino Acids

48.0

Weight (kDa)

7.6

Isoelectric Point (pI)

38.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Asp_protease PF09668 303 - 396 2.6e-07 Aspartyl protease
gag-asp_proteas PF13975 306 - 395 9.6e-10 gag-polyprotein putative aspartyl protease
Asp_protease_2 PF13650 307 - 393 9.4e-09 Aspartyl protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000385)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g23713 FvH4_1g25744 FvH4_2g00261 FvH4_2g00262 FvH4_2g15681 FvH4_2g17851 FvH4_2g35550 FvH4_3g05280 FvH4_3g10531 FvH4_3g25910 FvH4_3g28953 FvH4_3g33371 FvH4_3g33536 FvH4_3g36090 FvH4_4g03471 FvH4_4g03480 FvH4_4g06701 FvH4_4g19351 FvH4_4g34281 FvH4_5g00040 FvH4_5g03811 FvH4_5g03812 FvH4_5g11822 FvH4_5g30921 FvH4_5g31701 FvH4_6g12161 FvH4_6g15222 FvH4_6g15223 FvH4_6g17701 FvH4_6g17710 FvH4_6g19301 FvH4_6g33011 FvH4_6g34501 FvH4_6g50161 FvH4_7g04111 FvH4_7g04120 FvH4_7g04121 FvH4_7g04122 FvH4_7g04123 FvH4_7g28231 FvH4_c7g00010
malus_domestica MD12G1084200.v1.1
prunus_persica Prupe.1G206200_v2.0.a1 Prupe.8G085600_v2.0.a1
pyrus_communis pycom01g11080 pycom02g20500 pycom09g18370 pycom12555g00210 pycom13g23120 pycom14g10590 pycom16g17620 pycom16g22750
rosa_chinensis RchiOBHm_Chr2g0137481 RchiOBHm_Chr6g0251961 RchiOBHm_Chr7g0185821
rosa_laevigata RLG00000005585 RLG00000010281 RLG00000010912 RLG00000030342 RLG00000034281
rosa_multiflora Rmu_sc0000096.1_g000010 Rmu_sc0002481.1_g000045 Rmu_sc0003598.1_g000009 Rmu_sc0003863.1_g000019 Rmu_sc0003973.1_g000002 Rmu_sc0004823.1_g000050 Rmu_sc0005621.1_g000007 Rmu_sc0006537.1_g000030 Rmu_sc0006608.1_g000014 Rmu_sc0008506.1_g000007 Rmu_sc0014428.1_g000001 Rmu_sc0035437.1_g000001 Rmu_ssc0000396.1_g000022
rosa_roxburghii Rroxscaffold_175G00432300 Rroxscaffold_17G00435390 Rroxscaffold_27G00446590 Rroxscaffold_29G00441820 Rroxscaffold_31G00438110 Rroxscaffold_32G00442750 Rroxscaffold_33G00439810 Rroxscaffold_37G00445160 Rroxscaffold_4G00306500 Rroxscaffold_4G00327700 Rroxscaffold_4G00332630 Rroxscaffold_52G00439360 Rroxscaffold_63G00444420 Rroxscaffold_76G00448580 Rroxscaffold_7G00156270
rosa_rugosa Rorug03G0295200
rosa_samantha Rh1BG433700 Rh1CG115400 Rh2AG676300 Rh2CG341800 Rh2DG381400 Rh3BG370100 Rh3BG370200 Rh4AG441600 Rh4BG076500 Rh4BG107400 Rh5BG005600 Rh6BG010100 Rh7BG000200
rosa_wichuraiana Rw0G003820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1066
AatII GACGTC 1 cut(s) 989
Acc36I ACCTGC 1 cut(s) 1066
AccB1I GGYRCC 1 cut(s) 41
AccB7I CCANNNNNTGG 1 cut(s) 1240
AccII CGCG 2 cut(s) 753, 1086
AccIII TCCGGA 1 cut(s) 5
AciI CCGC 4 cut(s) 264, 696, 896, 963
AclWI GGATC 5 cut(s) 165, 220, 233, 812, 913
AcoI YGGCCR 2 cut(s) 105, 1219
AcsI RAATTY 2 cut(s) 492, 1175
AcyI GRCGYC 3 cut(s) 42, 541, 986
AfaI GTAC 2 cut(s) 66, 455
AfiI CCNNNNNNNGG 7 cut(s) 235, 286, 438, 534, 1073, 1240, 1280
AgsI TTSAA 6 cut(s) 385, 460, 498, 583, 865, 1175
AjiI CACGTC 1 cut(s) 622
Alw21I GWGCWC 1 cut(s) 273
Alw26I GTCTC 3 cut(s) 237, 356, 612
AlwI GGATC 5 cut(s) 165, 220, 233, 812, 913
Ama87I CYCGRG 1 cut(s) 644
Aor13HI TCCGGA 1 cut(s) 5
AoxI GGCC 6 cut(s) 105, 353, 736, 1009, 1168, 1219
ApeKI GCWGC 4 cut(s) 71, 164, 332, 827
ApoI RAATTY 2 cut(s) 492, 1175
Asp700I GAANNNNTTC 1 cut(s) 674
AspLEI GCGC 4 cut(s) 44, 203, 753, 1109
AspS9I GGNCC 3 cut(s) 238, 353, 737
AsuHPI GGTGA 3 cut(s) 679, 1060, 1123
AsuNHI GCTAGC 1 cut(s) 869
AvaI CYCGRG 1 cut(s) 644
AvaII GGWCC 1 cut(s) 238
BamHI GGATCC 1 cut(s) 225
BanI GGYRCC 1 cut(s) 41
BanII GRGCYC 1 cut(s) 273
BbsI GAAGAC 2 cut(s) 1049, 1209
Bbv12I GWGCWC 1 cut(s) 273
BbvI GCAGC 4 cut(s) 58, 176, 319, 839
BccI CCATC 3 cut(s) 829, 1138, 1274
BceAI ACGGC 4 cut(s) 92, 101, 214, 751
BcgI CGANNNNNNTGC 2 cut(s) 1147, 1181
BclI TGATCA 1 cut(s) 253
BcoDI GTCTC 3 cut(s) 237, 356, 612
BfaI CTAG 3 cut(s) 515, 870, 1266
BfoI RGCGCY 3 cut(s) 45, 204, 1110
BfuAI ACCTGC 1 cut(s) 1066
BglI GCCNNNNNGGC 1 cut(s) 866
BisI GCNGC 4 cut(s) 72, 165, 333, 828
BlpI GCTNAGC 1 cut(s) 267
BlsI GCNGC 4 cut(s) 73, 166, 334, 829
Bme18I GGWCC 1 cut(s) 238
BmeT110I CYCGRG 1 cut(s) 644
BmgBI CACGTC 1 cut(s) 622
BmgT120I GGNCC 3 cut(s) 238, 353, 737
BmiI GGNNCC 3 cut(s) 43, 53, 227
BmsI GCATC 5 cut(s) 70, 738, 814, 830, 852
BmtI GCTAGC 1 cut(s) 873
BpiI GAAGAC 2 cut(s) 1049, 1209
Bpu1102I GCTNAGC 1 cut(s) 267
BpuEI CTTGAG 2 cut(s) 494, 1260
Bsa29I ATCGAT 1 cut(s) 918
BsaHI GRCGYC 3 cut(s) 42, 541, 986
BsaJI CCNNGG 6 cut(s) 108, 168, 229, 884, 951, 1134
BsaWI WCCGGW 2 cut(s) 5, 846
BsaXI ACNNNNNCTCC 5 cut(s) 6, 30, 36, 300, 330
Bsc4I CCNNNNNNNGG 7 cut(s) 235, 286, 438, 534, 1073, 1240, 1280
BseAI TCCGGA 1 cut(s) 5
BseCI ATCGAT 1 cut(s) 918
BseDI CCNNGG 6 cut(s) 108, 168, 229, 884, 951, 1134
BseGI GGATG 6 cut(s) 484, 829, 840, 843, 845, 1153
BseLI CCNNNNNNNGG 7 cut(s) 235, 286, 438, 534, 1073, 1240, 1280
BseMII CTCAG 1 cut(s) 258
BseRI GAGGAG 3 cut(s) 64, 830, 833
BseX3I CGGCCG 1 cut(s) 105
BseXI GCAGC 4 cut(s) 58, 176, 319, 839
BsgI GTGCAG 1 cut(s) 318
Bsh1236I CGCG 2 cut(s) 753, 1086
Bsh1285I CGRYCG 1 cut(s) 108
BshFI GGCC 6 cut(s) 107, 355, 738, 1011, 1170, 1221
BshNI GGYRCC 1 cut(s) 41
BshVI ATCGAT 1 cut(s) 918
BsiEI CGRYCG 1 cut(s) 108
BsiHKAI GWGCWC 1 cut(s) 273
BsiHKCI CYCGRG 1 cut(s) 644
BsiSI CCGG 2 cut(s) 6, 847
BslFI GGGAC 1 cut(s) 860
BslI CCNNNNNNNGG 7 cut(s) 235, 286, 438, 534, 1073, 1240, 1280
BsmAI GTCTC 3 cut(s) 237, 356, 612
BsmBI CGTCTC 2 cut(s) 356, 612
BsmFI GGGAC 1 cut(s) 860
BsnI GGCC 6 cut(s) 107, 355, 738, 1011, 1170, 1221
BsoBI CYCGRG 1 cut(s) 644
Bsp1286I GDGCHC 1 cut(s) 273
Bsp13I TCCGGA 1 cut(s) 5
Bsp143I GATC 5 cut(s) 157, 225, 253, 804, 905
Bsp1720I GCTNAGC 1 cut(s) 267
Bsp19I CCATGG 1 cut(s) 168
BspACI CCGC 4 cut(s) 264, 696, 896, 963
BspANI GGCC 6 cut(s) 107, 355, 738, 1011, 1170, 1221
BspCNI CTCAG 1 cut(s) 259
BspDI ATCGAT 1 cut(s) 918
BspEI TCCGGA 1 cut(s) 5
BspFNI CGCG 2 cut(s) 753, 1086
BspHI TCATGA 1 cut(s) 981
BspLI GGNNCC 3 cut(s) 43, 53, 227
BspMI ACCTGC 1 cut(s) 1066
BspOI GCTAGC 1 cut(s) 873
BspPI GGATC 5 cut(s) 165, 220, 233, 812, 913
BspT107I GGYRCC 1 cut(s) 41
BssECI CCNNGG 6 cut(s) 108, 168, 229, 884, 951, 1134
BssMI GATC 5 cut(s) 157, 225, 253, 804, 905
BssNI GRCGYC 3 cut(s) 42, 541, 986
BssT1I CCWWGG 3 cut(s) 168, 884, 951
Bst4CI ACNGT 2 cut(s) 1048, 1135
Bst6I CTCTTC 5 cut(s) 171, 401, 602, 665, 807
BstACI GRCGYC 3 cut(s) 42, 541, 986
BstC8I GCNNGC 5 cut(s) 30, 871, 1084, 1192, 1254
BstDEI CTNAG 2 cut(s) 267, 576
BstDSI CCRYGG 3 cut(s) 108, 168, 1134
BstENI CCTNNNNNAGG 1 cut(s) 284
BstF5I GGATG 6 cut(s) 484, 829, 840, 843, 845, 1153
BstFNI CGCG 2 cut(s) 753, 1086
BstH2I RGCGCY 3 cut(s) 45, 204, 1110
BstHHI GCGC 4 cut(s) 44, 203, 753, 1109
BstKTI GATC 5 cut(s) 160, 228, 256, 807, 908
BstMAI GTCTC 3 cut(s) 237, 356, 612
BstMBI GATC 5 cut(s) 157, 225, 253, 804, 905
BstMCI CGRYCG 1 cut(s) 108
BstMWI GCNNNNNNNGC 6 cut(s) 80, 524, 729, 779, 866, 1218
BstNSI RCATGY 1 cut(s) 71
BstUI CGCG 2 cut(s) 753, 1086
BstV1I GCAGC 4 cut(s) 58, 176, 319, 839
BstV2I GAAGAC 2 cut(s) 1049, 1209
BstX2I RGATCY 2 cut(s) 157, 225
BstYI RGATCY 2 cut(s) 157, 225
BstZI CGGCCG 1 cut(s) 105
Bsu15I ATCGAT 1 cut(s) 918
BsuRI GGCC 6 cut(s) 107, 355, 738, 1011, 1170, 1221
BsuTUI ATCGAT 1 cut(s) 918
BtgI CCRYGG 3 cut(s) 108, 168, 1134
BtgZI GCGATG 1 cut(s) 1101
BtrI CACGTC 1 cut(s) 622
BtsCI GGATG 6 cut(s) 484, 829, 840, 843, 845, 1153
BtsI GCAGTG 1 cut(s) 1042
BtsIMutI CAGTG 1 cut(s) 1042
BveI ACCTGC 1 cut(s) 1066
Cac8I GCNNGC 5 cut(s) 30, 871, 1084, 1192, 1254
CciI TCATGA 1 cut(s) 981
CfoI GCGC 4 cut(s) 44, 203, 753, 1109
Cfr13I GGNCC 3 cut(s) 238, 353, 737
ClaI ATCGAT 1 cut(s) 918
CseI GACGC 2 cut(s) 530, 862
Csp6I GTAC 2 cut(s) 65, 454
CspCI CAANNNNNGTGG 2 cut(s) 1051, 1086
CviAII CATG 9 cut(s) 68, 169, 445, 508, 784, 982, 1159, 1180, 1223
CviQI GTAC 2 cut(s) 65, 454
DdeI CTNAG 2 cut(s) 267, 576
DinI GGCGCC 1 cut(s) 43
DpnI GATC 5 cut(s) 159, 227, 255, 806, 907
DpnII GATC 5 cut(s) 157, 225, 253, 804, 905
EaeI YGGCCR 2 cut(s) 105, 1219
EagI CGGCCG 1 cut(s) 105
Eam1104I CTCTTC 5 cut(s) 171, 401, 602, 665, 807
EarI CTCTTC 5 cut(s) 171, 401, 602, 665, 807
Ecl136II GAGCTC 1 cut(s) 271
EclXI CGGCCG 1 cut(s) 105
Eco130I CCWWGG 3 cut(s) 168, 884, 951
Eco24I GRGCYC 1 cut(s) 273
Eco47I GGWCC 1 cut(s) 238
Eco52I CGGCCG 1 cut(s) 105
Eco53kI GAGCTC 1 cut(s) 271
Eco88I CYCGRG 1 cut(s) 644
EcoICRI GAGCTC 1 cut(s) 271
EcoNI CCTNNNNNAGG 1 cut(s) 284
EcoRI GAATTC 1 cut(s) 1175
EcoT14I CCWWGG 3 cut(s) 168, 884, 951
EcoT22I ATGCAT 1 cut(s) 845
EcoT38I GRGCYC 1 cut(s) 273
EgeI GGCGCC 1 cut(s) 43
EheI GGCGCC 1 cut(s) 43
ErhI CCWWGG 3 cut(s) 168, 884, 951
Esp3I CGTCTC 2 cut(s) 356, 612
FaeI CATG 9 cut(s) 71, 172, 448, 511, 787, 985, 1162, 1183, 1226
FalI AAGNNNNNCTT 2 cut(s) 710, 742
FaqI GGGAC 1 cut(s) 860
FatI CATG 9 cut(s) 67, 168, 444, 507, 783, 981, 1158, 1179, 1222
FauNDI CATATG 1 cut(s) 744
FbaI TGATCA 1 cut(s) 253
Fnu4HI GCNGC 4 cut(s) 72, 165, 333, 828
FokI GGATG 6 cut(s) 491, 830, 836, 847, 852, 1160
FriOI GRGCYC 1 cut(s) 273
Fsp4HI GCNGC 4 cut(s) 72, 165, 333, 828
FspBI CTAG 3 cut(s) 515, 870, 1266
GlaI GCGC 4 cut(s) 43, 202, 752, 1108
GluI GCNGC 4 cut(s) 72, 165, 333, 828
HaeII RGCGCY 3 cut(s) 45, 204, 1110
HaeIII GGCC 6 cut(s) 107, 355, 738, 1011, 1170, 1221
HapII CCGG 2 cut(s) 6, 847
HgaI GACGC 2 cut(s) 530, 862
HhaI GCGC 4 cut(s) 44, 203, 753, 1109
Hin1I GRCGYC 3 cut(s) 42, 541, 986
Hin1II CATG 9 cut(s) 71, 172, 448, 511, 787, 985, 1162, 1183, 1226
Hin6I GCGC 4 cut(s) 42, 201, 751, 1107
HinP1I GCGC 4 cut(s) 42, 201, 751, 1107
HindIII AAGCTT 4 cut(s) 248, 470, 1004, 1237
HinfI GANTC 7 cut(s) 101, 377, 485, 647, 943, 1017, 1028
HpaII CCGG 2 cut(s) 6, 847
HphI GGTGA 3 cut(s) 679, 1060, 1123
Hpy166II GTNNAC 1 cut(s) 1099
Hpy188I TCNGA 6 cut(s) 92, 230, 242, 284, 991, 1016
Hpy188III TCNNGA 7 cut(s) 6, 679, 925, 982, 1021, 1141, 1277
Hpy8I GTNNAC 1 cut(s) 1099
Hpy99I CGWCG 3 cut(s) 546, 737, 991
HpyCH4III ACNGT 2 cut(s) 1048, 1135
HpyCH4IV ACGT 3 cut(s) 141, 621, 986
HpyCH4V TGCA 8 cut(s) 83, 196, 324, 335, 793, 827, 843, 1226
HpyF10VI GCNNNNNNNGC 6 cut(s) 80, 524, 729, 779, 866, 1218
HpyF3I CTNAG 2 cut(s) 267, 576
HpySE526I ACGT 3 cut(s) 141, 621, 986
Hsp92I GRCGYC 3 cut(s) 42, 541, 986
Hsp92II CATG 9 cut(s) 71, 172, 448, 511, 787, 985, 1162, 1183, 1226
HspAI GCGC 4 cut(s) 42, 201, 751, 1107
KasI GGCGCC 1 cut(s) 41
Kpn2I TCCGGA 1 cut(s) 5
Ksp22I TGATCA 1 cut(s) 253
Kzo9I GATC 5 cut(s) 157, 225, 253, 804, 905
LmnI GCTCC 3 cut(s) 25, 51, 965
LpnPI CCDG 3 cut(s) 19, 860, 1071
Lsp1109I GCAGC 4 cut(s) 58, 176, 319, 839
LweI GCATC 5 cut(s) 70, 738, 814, 830, 852
MaeI CTAG 3 cut(s) 515, 870, 1266
MaeII ACGT 3 cut(s) 141, 621, 986
MaeIII GTNAC 3 cut(s) 145, 849, 1018
MalI GATC 5 cut(s) 159, 227, 255, 806, 907
MboI GATC 5 cut(s) 157, 225, 253, 804, 905
MflI RGATCY 2 cut(s) 157, 225
MhlI GDGCHC 1 cut(s) 273
MluCI AATT 2 cut(s) 492, 1175
Mly113I GGCGCC 1 cut(s) 42
MlyI GAGTC 4 cut(s) 371, 494, 656, 1026
MmeI TCCRAC 2 cut(s) 969, 1054
Mph1103I ATGCAT 1 cut(s) 845
MroI TCCGGA 1 cut(s) 5
MroXI GAANNNNTTC 1 cut(s) 674
MseI TTAA 1 cut(s) 339
MspA1I CMGCKG 1 cut(s) 266
MspI CCGG 2 cut(s) 6, 847
MvnI CGCG 2 cut(s) 753, 1086
MwoI GCNNNNNNNGC 6 cut(s) 80, 524, 729, 779, 866, 1218
NarI GGCGCC 1 cut(s) 42
NcoI CCATGG 1 cut(s) 168
NdeI CATATG 1 cut(s) 744
NdeII GATC 5 cut(s) 157, 225, 253, 804, 905
NheI GCTAGC 1 cut(s) 869
NlaIII CATG 9 cut(s) 71, 172, 448, 511, 787, 985, 1162, 1183, 1226
NlaIV GGNNCC 3 cut(s) 43, 53, 227
NmuCI GTSAC 2 cut(s) 145, 1018
NsiI ATGCAT 1 cut(s) 845
NspI RCATGY 1 cut(s) 71
PagI TCATGA 1 cut(s) 981
PaqCI CACCTGC 1 cut(s) 1066
PcsI WCGNNNNNNNCGW 3 cut(s) 567, 684, 1131
PdmI GAANNNNTTC 1 cut(s) 674
PfeI GAWTC 3 cut(s) 101, 943, 1028
PflMI CCANNNNNTGG 1 cut(s) 1240
PkrI GCNGC 4 cut(s) 73, 166, 334, 829
PleI GAGTC 4 cut(s) 371, 493, 655, 1025
PluTI GGCGCC 1 cut(s) 45
PpsI GAGTC 4 cut(s) 371, 493, 655, 1025
Psp124BI GAGCTC 1 cut(s) 273
PspN4I GGNNCC 3 cut(s) 43, 53, 227
PspPI GGNCC 3 cut(s) 238, 353, 737
PsuI RGATCY 2 cut(s) 157, 225
RsaI GTAC 2 cut(s) 66, 455
RsaNI GTAC 2 cut(s) 65, 454
SacI GAGCTC 1 cut(s) 273
SaqAI TTAA 1 cut(s) 339
SatI GCNGC 4 cut(s) 72, 165, 333, 828
Sau3AI GATC 5 cut(s) 157, 225, 253, 804, 905
Sau96I GGNCC 3 cut(s) 238, 353, 737
SchI GAGTC 4 cut(s) 371, 494, 656, 1026
SduI GDGCHC 1 cut(s) 273
SfaNI GCATC 5 cut(s) 70, 738, 814, 830, 852
SfoI GGCGCC 1 cut(s) 43
SinI GGWCC 1 cut(s) 238
SmlI CTYRAG 2 cut(s) 473, 1275
SmoI CTYRAG 2 cut(s) 473, 1275
Sse9I AATT 2 cut(s) 492, 1175
SsiI CCGC 4 cut(s) 264, 696, 896, 963
SspDI GGCGCC 1 cut(s) 41
SspMI CTAG 3 cut(s) 515, 870, 1266
SstI GAGCTC 1 cut(s) 273
StyI CCWWGG 3 cut(s) 168, 884, 951
TaaI ACNGT 2 cut(s) 1048, 1135
TaiI ACGT 3 cut(s) 144, 624, 989
TaqI TCGA 8 cut(s) 114, 127, 544, 561, 678, 807, 918, 1125
TasI AATT 2 cut(s) 492, 1175
TatI WGTACW 1 cut(s) 64
TfiI GAWTC 3 cut(s) 101, 943, 1028
Tru1I TTAA 1 cut(s) 339
Tru9I TTAA 1 cut(s) 339
TscAI CASTG 1 cut(s) 1042
TseFI GTSAC 2 cut(s) 145, 1018
TseI GCWGC 4 cut(s) 71, 164, 332, 827
Tsp45I GTSAC 2 cut(s) 145, 1018
TspDTI ATGAA 3 cut(s) 731, 970, 1168
TspRI CASTG 1 cut(s) 1042
Van91I CCANNNNNTGG 1 cut(s) 1240
VpaK11BI GGWCC 1 cut(s) 238
XagI CCTNNNNNAGG 1 cut(s) 284
XapI RAATTY 2 cut(s) 492, 1175
XceI RCATGY 1 cut(s) 71
XmnI GAANNNNTTC 1 cut(s) 674
XspI CTAG 3 cut(s) 515, 870, 1266
ZraI GACGTC 1 cut(s) 987
Zsp2I ATGCAT 1 cut(s) 845
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.