MD12G1084200.v1.1

DNA damage-inducible protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr12
OG0000385
Physical Location & Seq
Reverse (-)
10288220 .. 10289518
1299 bp
Loading structure...
UTR
Exon/CDS
Intron
MD12G1084200.v1.1.491

Sequence Viewer

Length: 405 bp
ATGTATTTTGTTTTTTATTTTTTTATTTTTTTTAGGGTAGTGCTATCCACACGCCCTTTTTACTTCCACACACCCCTTTTGGAGTGTAAAGGAATTGATGAAAATTGGGCTGCTGCTCTGGAGCATAACCCTGAAGCTTTTGCAGGAGTGGTTATGTTGTATGTTGACATGGAAGTGAATGGTGTCCCGTTGAAGGCATTTGTTGACAGTGGAGCGCAGTCAACTATTATATCAAAAAGTTGTGCCGAGCGTTGTGGGTATGAGCTAATTTTAACTATTAGACTACTCTTTACTGGTTGTGAAAGTATATTTAAACAATCGACTCATTTTAATATTCTATTGATGAATATGCTTGGATCATGTACTCGAGTCTCGTGCCTGTTTGGATTAGCAAGTTTGGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Asp_protease UBA ubiquitin

Protein Analysis

135

Amino Acids

15.16

Weight (kDa)

5.56

Isoelectric Point (pI)

42.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Asp_protease PF09668 44 - 95 2.8e-18 Aspartyl protease
gag-asp_proteas PF13975 55 - 89 1.6e-09 gag-polyprotein putative aspartyl protease
Asp_protease_2 PF13650 55 - 89 3.9e-07 Aspartyl protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000385)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g23713 FvH4_1g25744 FvH4_2g00261 FvH4_2g00262 FvH4_2g15681 FvH4_2g17851 FvH4_2g35550 FvH4_3g05280 FvH4_3g10531 FvH4_3g25910 FvH4_3g28953 FvH4_3g33371 FvH4_3g33536 FvH4_3g36090 FvH4_4g03471 FvH4_4g03480 FvH4_4g06701 FvH4_4g19351 FvH4_4g34281 FvH4_5g00040 FvH4_5g03811 FvH4_5g03812 FvH4_5g11822 FvH4_5g30921 FvH4_5g31701 FvH4_6g12161 FvH4_6g15222 FvH4_6g15223 FvH4_6g17701 FvH4_6g17710 FvH4_6g19301 FvH4_6g33011 FvH4_6g34501 FvH4_6g50161 FvH4_7g04111 FvH4_7g04120 FvH4_7g04121 FvH4_7g04122 FvH4_7g04123 FvH4_7g28231 FvH4_c7g00010
malus_domestica MD12G1084200.v1.1
prunus_persica Prupe.1G206200_v2.0.a1 Prupe.8G085600_v2.0.a1
pyrus_communis pycom01g11080 pycom02g20500 pycom09g18370 pycom12555g00210 pycom13g23120 pycom14g10590 pycom16g17620 pycom16g22750
rosa_chinensis RchiOBHm_Chr2g0137481 RchiOBHm_Chr6g0251961 RchiOBHm_Chr7g0185821
rosa_laevigata RLG00000005585 RLG00000010281 RLG00000010912 RLG00000030342 RLG00000034281
rosa_multiflora Rmu_sc0000096.1_g000010 Rmu_sc0002481.1_g000045 Rmu_sc0003598.1_g000009 Rmu_sc0003863.1_g000019 Rmu_sc0003973.1_g000002 Rmu_sc0004823.1_g000050 Rmu_sc0005621.1_g000007 Rmu_sc0006537.1_g000030 Rmu_sc0006608.1_g000014 Rmu_sc0008506.1_g000007 Rmu_sc0014428.1_g000001 Rmu_sc0035437.1_g000001 Rmu_ssc0000396.1_g000022
rosa_roxburghii Rroxscaffold_175G00432300 Rroxscaffold_17G00435390 Rroxscaffold_27G00446590 Rroxscaffold_29G00441820 Rroxscaffold_31G00438110 Rroxscaffold_32G00442750 Rroxscaffold_33G00439810 Rroxscaffold_37G00445160 Rroxscaffold_4G00306500 Rroxscaffold_4G00327700 Rroxscaffold_4G00332630 Rroxscaffold_52G00439360 Rroxscaffold_63G00444420 Rroxscaffold_76G00448580 Rroxscaffold_7G00156270
rosa_rugosa Rorug03G0295200
rosa_samantha Rh1BG433700 Rh1CG115400 Rh2AG676300 Rh2CG341800 Rh2DG381400 Rh3BG370100 Rh3BG370200 Rh4AG441600 Rh4BG076500 Rh4BG107400 Rh5BG005600 Rh6BG010100 Rh7BG000200
rosa_wichuraiana Rw0G003820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 364
AcuI CTGAAG 1 cut(s) 153
AfaI GTAC 1 cut(s) 364
AfiI CCNNNNNNNGG 1 cut(s) 193
AgsI TTSAA 1 cut(s) 193
AluBI AGCT 2 cut(s) 137, 265
AluI AGCT 2 cut(s) 137, 265
Alw26I GTCTC 1 cut(s) 376
AlwI GGATC 1 cut(s) 364
Ama87I CYCGRG 1 cut(s) 366
ApeKI GCWGC 2 cut(s) 110, 113
AspLEI GCGC 1 cut(s) 217
AvaI CYCGRG 1 cut(s) 366
BauI CACGAG 1 cut(s) 373
BbvI GCAGC 2 cut(s) 97, 100
BcgI CGANNNNNNTGC 2 cut(s) 357, 391
BcoDI GTCTC 1 cut(s) 376
BisI GCNGC 2 cut(s) 111, 114
BlsI GCNGC 2 cut(s) 112, 115
BmeT110I CYCGRG 1 cut(s) 366
BpmI CTGGAG 1 cut(s) 140
Bsc4I CCNNNNNNNGG 1 cut(s) 193
Bse1I ACTGG 1 cut(s) 298
BseLI CCNNNNNNNGG 1 cut(s) 193
BseNI ACTGG 1 cut(s) 298
BseXI GCAGC 2 cut(s) 97, 100
BsiHKCI CYCGRG 1 cut(s) 366
BslFI GGGAC 1 cut(s) 170
BslI CCNNNNNNNGG 1 cut(s) 193
BsmAI GTCTC 1 cut(s) 376
BsmFI GGGAC 1 cut(s) 170
BsoBI CYCGRG 1 cut(s) 366
Bsp143I GATC 1 cut(s) 356
BspPI GGATC 1 cut(s) 364
BsrI ACTGG 1 cut(s) 298
BssMI GATC 1 cut(s) 356
BssSI CACGAG 1 cut(s) 373
Bst2BI CACGAG 1 cut(s) 373
Bst4CI ACNGT 1 cut(s) 209
BstHHI GCGC 1 cut(s) 217
BstKTI GATC 1 cut(s) 359
BstMAI GTCTC 1 cut(s) 376
BstMBI GATC 1 cut(s) 356
BstV1I GCAGC 2 cut(s) 97, 100
BtsIMutI CAGTG 1 cut(s) 214
CfoI GCGC 1 cut(s) 217
Csp6I GTAC 1 cut(s) 363
CviAII CATG 2 cut(s) 169, 360
CviJI RGCY 3 cut(s) 110, 137, 265
CviKI_1 RGCY 3 cut(s) 110, 137, 265
CviQI GTAC 1 cut(s) 363
DpnI GATC 1 cut(s) 358
DpnII GATC 1 cut(s) 356
DraI TTTAAA 1 cut(s) 313
Eco57I CTGAAG 1 cut(s) 153
Eco88I CYCGRG 1 cut(s) 366
FaeI CATG 2 cut(s) 172, 363
FaiI YATR 9 cut(s) 126, 155, 162, 170, 230, 261, 308, 350, 361
FaqI GGGAC 1 cut(s) 170
FatI CATG 2 cut(s) 168, 359
Fnu4HI GCNGC 2 cut(s) 111, 114
Fsp4HI GCNGC 2 cut(s) 111, 114
GlaI GCGC 1 cut(s) 216
GluI GCNGC 2 cut(s) 111, 114
GsuI CTGGAG 1 cut(s) 140
HhaI GCGC 1 cut(s) 217
Hin1II CATG 2 cut(s) 172, 363
Hin6I GCGC 1 cut(s) 215
HinP1I GCGC 1 cut(s) 215
HincII GTYRAC 3 cut(s) 166, 205, 222
HindII GTYRAC 3 cut(s) 166, 205, 222
HindIII AAGCTT 1 cut(s) 135
HinfI GANTC 2 cut(s) 322, 369
Hpy166II GTNNAC 3 cut(s) 166, 205, 222
Hpy188III TCNNGA 1 cut(s) 119
Hpy8I GTNNAC 3 cut(s) 166, 205, 222
HpyAV CCTTC 1 cut(s) 187
HpyCH4III ACNGT 1 cut(s) 209
HpyCH4V TGCA 1 cut(s) 143
Hsp92II CATG 2 cut(s) 172, 363
HspAI GCGC 1 cut(s) 215
Kzo9I GATC 1 cut(s) 356
LmnI GCTCC 2 cut(s) 121, 212
LpnPI CCDG 5 cut(s) 104, 129, 144, 279, 392
Lsp1109I GCAGC 2 cut(s) 97, 100
MalI GATC 1 cut(s) 358
MboI GATC 1 cut(s) 356
MluCI AATT 3 cut(s) 93, 103, 267
MlyI GAGTC 2 cut(s) 316, 378
MseI TTAA 3 cut(s) 272, 312, 330
MslI CAYNNNNRTG 1 cut(s) 173
NdeII GATC 1 cut(s) 356
NlaIII CATG 2 cut(s) 172, 363
NmeAIII GCCGAG 1 cut(s) 271
PaeR7I CTCGAG 1 cut(s) 366
PkrI GCNGC 2 cut(s) 112, 115
PleI GAGTC 2 cut(s) 316, 377
PpsI GAGTC 2 cut(s) 316, 377
PspXI VCTCGAGB 1 cut(s) 366
RsaI GTAC 1 cut(s) 364
RsaNI GTAC 1 cut(s) 363
RseI CAYNNNNRTG 1 cut(s) 173
SaqAI TTAA 3 cut(s) 272, 312, 330
SatI GCNGC 2 cut(s) 111, 114
Sau3AI GATC 1 cut(s) 356
SchI GAGTC 2 cut(s) 316, 378
SetI ASST 2 cut(s) 139, 267
Sfr274I CTCGAG 1 cut(s) 366
SlaI CTCGAG 1 cut(s) 366
SmiMI CAYNNNNRTG 1 cut(s) 173
SmlI CTYRAG 1 cut(s) 366
SmoI CTYRAG 1 cut(s) 366
Sse9I AATT 3 cut(s) 93, 103, 267
SspI AATATT 1 cut(s) 334
TaaI ACNGT 1 cut(s) 209
TaqI TCGA 2 cut(s) 320, 367
TasI AATT 3 cut(s) 93, 103, 267
TatI WGTACW 1 cut(s) 362
Tru1I TTAA 3 cut(s) 272, 312, 330
Tru9I TTAA 3 cut(s) 272, 312, 330
TscAI CASTG 1 cut(s) 214
TseI GCWGC 2 cut(s) 110, 113
TspDTI ATGAA 2 cut(s) 114, 359
TspRI CASTG 1 cut(s) 214
XhoI CTCGAG 1 cut(s) 366
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.