Rh3BG370100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0000385
Physical Location & Seq
Reverse (-)
46409204 .. 46409497
294 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG370100.1

Sequence Viewer

Length: 294 bp
ATGGGTGGACTTTCCACAAAGGAGCGAATCGAGAGACTTGAAGGATTGGTTGGTGACCCACGAGTAGATGGGGAAGAGCCCATTTCATTGGCAGTTCAGTGCACACGAATGGGAGCAACCATCAAGGAGATGGACACTGCCTTCAAGCGATTCAAGGATGAAGTCAACGGCAAGTTAACTTCCATTGTGGAAGAGCTAGCTGGCTTGATGAAAGCTGTGGAGGACAATGGCGAGGAGGCAAAATCTGATGTCAGAGACTTAGAGGGGAGATCAGTCTTCTCAAGAGGGTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

97

Amino Acids

10.6

Weight (kDa)

4.81

Isoelectric Point (pI)

24.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000385)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g23713 FvH4_1g25744 FvH4_2g00261 FvH4_2g00262 FvH4_2g15681 FvH4_2g17851 FvH4_2g35550 FvH4_3g05280 FvH4_3g10531 FvH4_3g25910 FvH4_3g28953 FvH4_3g33371 FvH4_3g33536 FvH4_3g36090 FvH4_4g03471 FvH4_4g03480 FvH4_4g06701 FvH4_4g19351 FvH4_4g34281 FvH4_5g00040 FvH4_5g03811 FvH4_5g03812 FvH4_5g11822 FvH4_5g30921 FvH4_5g31701 FvH4_6g12161 FvH4_6g15222 FvH4_6g15223 FvH4_6g17701 FvH4_6g17710 FvH4_6g19301 FvH4_6g33011 FvH4_6g34501 FvH4_6g50161 FvH4_7g04111 FvH4_7g04120 FvH4_7g04121 FvH4_7g04122 FvH4_7g04123 FvH4_7g28231 FvH4_c7g00010
malus_domestica MD12G1084200.v1.1
prunus_persica Prupe.1G206200_v2.0.a1 Prupe.8G085600_v2.0.a1
pyrus_communis pycom01g11080 pycom02g20500 pycom09g18370 pycom12555g00210 pycom13g23120 pycom14g10590 pycom16g17620 pycom16g22750
rosa_chinensis RchiOBHm_Chr2g0137481 RchiOBHm_Chr6g0251961 RchiOBHm_Chr7g0185821
rosa_laevigata RLG00000005585 RLG00000010281 RLG00000010912 RLG00000030342 RLG00000034281
rosa_multiflora Rmu_sc0000096.1_g000010 Rmu_sc0002481.1_g000045 Rmu_sc0003598.1_g000009 Rmu_sc0003863.1_g000019 Rmu_sc0003973.1_g000002 Rmu_sc0004823.1_g000050 Rmu_sc0005621.1_g000007 Rmu_sc0006537.1_g000030 Rmu_sc0006608.1_g000014 Rmu_sc0008506.1_g000007 Rmu_sc0014428.1_g000001 Rmu_sc0035437.1_g000001 Rmu_ssc0000396.1_g000022
rosa_roxburghii Rroxscaffold_175G00432300 Rroxscaffold_17G00435390 Rroxscaffold_27G00446590 Rroxscaffold_29G00441820 Rroxscaffold_31G00438110 Rroxscaffold_32G00442750 Rroxscaffold_33G00439810 Rroxscaffold_37G00445160 Rroxscaffold_4G00306500 Rroxscaffold_4G00327700 Rroxscaffold_4G00332630 Rroxscaffold_52G00439360 Rroxscaffold_63G00444420 Rroxscaffold_76G00448580 Rroxscaffold_7G00156270
rosa_rugosa Rorug03G0295200
rosa_samantha Rh1BG433700 Rh1CG115400 Rh2AG676300 Rh2CG341800 Rh2DG381400 Rh3BG370100 Rh3BG370200 Rh4AG441600 Rh4BG076500 Rh4BG107400 Rh5BG005600 Rh6BG010100 Rh7BG000200
rosa_wichuraiana Rw0G003820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AgsI TTSAA 3 cut(s) 41, 145, 154
AjuI GAANNNNNNNTTGG 2 cut(s) 33, 65
AluBI AGCT 3 cut(s) 196, 200, 215
AluI AGCT 3 cut(s) 196, 200, 215
Alw21I GWGCWC 1 cut(s) 104
Alw26I GTCTC 2 cut(s) 28, 249
Alw44I GTGCAC 1 cut(s) 100
ApaLI GTGCAC 1 cut(s) 100
AsuHPI GGTGA 1 cut(s) 65
AsuNHI GCTAGC 1 cut(s) 196
BaeGI GKGCMC 1 cut(s) 104
BanII GRGCYC 1 cut(s) 81
BauI CACGAG 1 cut(s) 60
BbsI GAAGAC 1 cut(s) 268
Bbv12I GWGCWC 1 cut(s) 104
BccI CCATC 3 cut(s) 62, 124, 128
BceAI ACGGC 1 cut(s) 184
BcoDI GTCTC 2 cut(s) 28, 249
BfaI CTAG 1 cut(s) 197
BmtI GCTAGC 1 cut(s) 200
BpiI GAAGAC 1 cut(s) 268
BpuEI CTTGAG 1 cut(s) 265
BseGI GGATG 1 cut(s) 163
BseRI GAGGAG 1 cut(s) 248
BseSI GKGCMC 1 cut(s) 104
BsiHKAI GWGCWC 1 cut(s) 104
BsmAI GTCTC 2 cut(s) 28, 249
Bsp1286I GDGCHC 2 cut(s) 81, 104
Bsp143I GATC 1 cut(s) 269
BspOI GCTAGC 1 cut(s) 200
BspQI GCTCTTC 2 cut(s) 69, 186
BssMI GATC 1 cut(s) 269
BssSI CACGAG 1 cut(s) 60
Bst2BI CACGAG 1 cut(s) 60
Bst6I CTCTTC 2 cut(s) 69, 186
BstC8I GCNNGC 2 cut(s) 198, 202
BstDEI CTNAG 1 cut(s) 259
BstEII GGTNACC 1 cut(s) 53
BstF5I GGATG 1 cut(s) 163
BstKTI GATC 1 cut(s) 272
BstMAI GTCTC 2 cut(s) 28, 249
BstMBI GATC 1 cut(s) 269
BstPI GGTNACC 1 cut(s) 53
BstSLI GKGCMC 1 cut(s) 104
BstV2I GAAGAC 1 cut(s) 268
BstXI CCANNNNNNTGG 1 cut(s) 88
BtsCI GGATG 1 cut(s) 163
BtsI GCAGTG 1 cut(s) 135
BtsIMutI CAGTG 2 cut(s) 104, 135
Cac8I GCNNGC 2 cut(s) 198, 202
CviJI RGCY 5 cut(s) 79, 196, 200, 204, 215
CviKI_1 RGCY 5 cut(s) 79, 196, 200, 204, 215
DdeI CTNAG 1 cut(s) 259
DpnI GATC 1 cut(s) 271
DpnII GATC 1 cut(s) 269
Eam1104I CTCTTC 2 cut(s) 69, 186
EarI CTCTTC 2 cut(s) 69, 186
Eco24I GRGCYC 1 cut(s) 81
Eco91I GGTNACC 1 cut(s) 53
EcoO65I GGTNACC 1 cut(s) 53
EcoT38I GRGCYC 1 cut(s) 81
FokI GGATG 1 cut(s) 170
FriOI GRGCYC 1 cut(s) 81
FspBI CTAG 1 cut(s) 197
HincII GTYRAC 2 cut(s) 166, 177
HindII GTYRAC 2 cut(s) 166, 177
HinfI GANTC 2 cut(s) 27, 150
HpaI GTTAAC 1 cut(s) 177
HphI GGTGA 1 cut(s) 65
Hpy166II GTNNAC 4 cut(s) 8, 102, 166, 177
Hpy188I TCNGA 2 cut(s) 247, 254
Hpy188III TCNNGA 2 cut(s) 31, 282
Hpy8I GTNNAC 4 cut(s) 8, 102, 166, 177
HpyAV CCTTC 2 cut(s) 35, 151
HpyCH4V TGCA 1 cut(s) 102
HpyF3I CTNAG 1 cut(s) 259
KspAI GTTAAC 1 cut(s) 177
Kzo9I GATC 1 cut(s) 269
LguI GCTCTTC 2 cut(s) 69, 186
LmnI GCTCC 2 cut(s) 22, 113
LpnPI CCDG 1 cut(s) 186
MaeI CTAG 1 cut(s) 197
MaeIII GTNAC 1 cut(s) 53
MalI GATC 1 cut(s) 271
MboI GATC 1 cut(s) 269
MboII GAAGA 3 cut(s) 86, 203, 268
MhlI GDGCHC 2 cut(s) 81, 104
MnlI CCTC 5 cut(s) 214, 226, 229, 256, 278
MseI TTAA 1 cut(s) 176
MslI CAYNNNNRTG 1 cut(s) 107
NdeII GATC 1 cut(s) 269
NheI GCTAGC 1 cut(s) 196
NmuCI GTSAC 1 cut(s) 53
PciSI GCTCTTC 2 cut(s) 69, 186
PfeI GAWTC 2 cut(s) 27, 150
PspEI GGTNACC 1 cut(s) 53
RseI CAYNNNNRTG 1 cut(s) 107
SapI GCTCTTC 2 cut(s) 69, 186
SaqAI TTAA 1 cut(s) 176
Sau3AI GATC 1 cut(s) 269
SduI GDGCHC 2 cut(s) 81, 104
SetI ASST 3 cut(s) 198, 202, 217
SmiMI CAYNNNNRTG 1 cut(s) 107
SmlI CTYRAG 1 cut(s) 280
SmoI CTYRAG 1 cut(s) 280
SspMI CTAG 1 cut(s) 197
TaqI TCGA 1 cut(s) 30
TfiI GAWTC 2 cut(s) 27, 150
Tru1I TTAA 1 cut(s) 176
Tru9I TTAA 1 cut(s) 176
TscAI CASTG 2 cut(s) 104, 142
TseFI GTSAC 1 cut(s) 53
Tsp45I GTSAC 1 cut(s) 53
TspDTI ATGAA 3 cut(s) 75, 174, 224
TspRI CASTG 2 cut(s) 104, 142
VneI GTGCAC 1 cut(s) 100
XcmI CCANNNNNNNNNTGG 1 cut(s) 127
XspI CTAG 1 cut(s) 197
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.