Rroxscaffold_175G00432300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000175
OG0000385
Physical Location & Seq
Forward (+)
832728 .. 833293
566 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_175G00432300.1

Sequence Viewer

Length: 483 bp
ATGGGGCAGAAAGATGTGAGCCTCGGTACCCGATGGAGGGAGCTTGGCTCCGATACCCGATGGGGTAGAGGATTTGATCCTCCCGCACCCAATGGGGTGGAGGGAGCCGGGCTCCGATACCCGACGGGGTGGAGGGAGCTTGGCTCCGATACCCGATGGGGTAGAAAGATGGAGCTTGGCTTCGATACCCGATGGGGTAGAGGATTTGATCCTCCCCGTACCCATGGGGTGGAGGAGCCGGGCTCCGATACCCGATGGGGTGGAGGGAGCTTGGCTCCGATACCCGATGGGGTGGACTTGATCCTCCCGCACCGATGGTTTGGAGGGAGCTTGGCTCCGATACTCGATGGGGTAGAGGACTTGATCCGACTCGTACCGATGGTTTGGAGGGAGCTTGGCTCCGATACCCGACGGGGTAGAGGGCTTGATCCTCCTGTACCCGATGGTTTGGAGGGAGCTTGGCTCCGATACCCGACGGGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

160

Amino Acids

17.66

Weight (kDa)

5.72

Isoelectric Point (pI)

49.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000385)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g23713 FvH4_1g25744 FvH4_2g00261 FvH4_2g00262 FvH4_2g15681 FvH4_2g17851 FvH4_2g35550 FvH4_3g05280 FvH4_3g10531 FvH4_3g25910 FvH4_3g28953 FvH4_3g33371 FvH4_3g33536 FvH4_3g36090 FvH4_4g03471 FvH4_4g03480 FvH4_4g06701 FvH4_4g19351 FvH4_4g34281 FvH4_5g00040 FvH4_5g03811 FvH4_5g03812 FvH4_5g11822 FvH4_5g30921 FvH4_5g31701 FvH4_6g12161 FvH4_6g15222 FvH4_6g15223 FvH4_6g17701 FvH4_6g17710 FvH4_6g19301 FvH4_6g33011 FvH4_6g34501 FvH4_6g50161 FvH4_7g04111 FvH4_7g04120 FvH4_7g04121 FvH4_7g04122 FvH4_7g04123 FvH4_7g28231 FvH4_c7g00010
malus_domestica MD12G1084200.v1.1
prunus_persica Prupe.1G206200_v2.0.a1 Prupe.8G085600_v2.0.a1
pyrus_communis pycom01g11080 pycom02g20500 pycom09g18370 pycom12555g00210 pycom13g23120 pycom14g10590 pycom16g17620 pycom16g22750
rosa_chinensis RchiOBHm_Chr2g0137481 RchiOBHm_Chr6g0251961 RchiOBHm_Chr7g0185821
rosa_laevigata RLG00000005585 RLG00000010281 RLG00000010912 RLG00000030342 RLG00000034281
rosa_multiflora Rmu_sc0000096.1_g000010 Rmu_sc0002481.1_g000045 Rmu_sc0003598.1_g000009 Rmu_sc0003863.1_g000019 Rmu_sc0003973.1_g000002 Rmu_sc0004823.1_g000050 Rmu_sc0005621.1_g000007 Rmu_sc0006537.1_g000030 Rmu_sc0006608.1_g000014 Rmu_sc0008506.1_g000007 Rmu_sc0014428.1_g000001 Rmu_sc0035437.1_g000001 Rmu_ssc0000396.1_g000022
rosa_roxburghii Rroxscaffold_175G00432300 Rroxscaffold_17G00435390 Rroxscaffold_27G00446590 Rroxscaffold_29G00441820 Rroxscaffold_31G00438110 Rroxscaffold_32G00442750 Rroxscaffold_33G00439810 Rroxscaffold_37G00445160 Rroxscaffold_4G00306500 Rroxscaffold_4G00327700 Rroxscaffold_4G00332630 Rroxscaffold_52G00439360 Rroxscaffold_63G00444420 Rroxscaffold_76G00448580 Rroxscaffold_7G00156270
rosa_rugosa Rorug03G0295200
rosa_samantha Rh1BG433700 Rh1CG115400 Rh2AG676300 Rh2CG341800 Rh2DG381400 Rh3BG370100 Rh3BG370200 Rh4AG441600 Rh4BG076500 Rh4BG107400 Rh5BG005600 Rh6BG010100 Rh7BG000200
rosa_wichuraiana Rw0G003820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 26
AccB1I GGYRCC 1 cut(s) 26
AccB7I CCANNNNNTGG 1 cut(s) 229
AciI CCGC 2 cut(s) 84, 308
AclWI GGATC 5 cut(s) 71, 203, 295, 358, 422
AfaI GTAC 4 cut(s) 28, 220, 375, 438
AfiI CCNNNNNNNGG 3 cut(s) 36, 37, 229
AluBI AGCT 7 cut(s) 43, 139, 175, 270, 330, 394, 458
AluI AGCT 7 cut(s) 43, 139, 175, 270, 330, 394, 458
AlwI GGATC 5 cut(s) 71, 203, 295, 358, 422
Asp718I GGTACC 1 cut(s) 26
AsuC2I CCSGG 2 cut(s) 109, 240
BanI GGYRCC 1 cut(s) 26
BanII GRGCYC 2 cut(s) 114, 245
BcnI CCSGG 2 cut(s) 109, 240
Bme1390I CCNGG 2 cut(s) 109, 240
BmrFI CCNGG 2 cut(s) 109, 240
BpuMI CCSGG 2 cut(s) 109, 240
BsaJI CCNNGG 2 cut(s) 22, 223
Bsc4I CCNNNNNNNGG 3 cut(s) 36, 37, 229
BseDI CCNNGG 2 cut(s) 22, 223
BseLI CCNNNNNNNGG 3 cut(s) 36, 37, 229
BseRI GAGGAG 1 cut(s) 248
BshNI GGYRCC 1 cut(s) 26
BsiSI CCGG 2 cut(s) 108, 239
BslI CCNNNNNNNGG 3 cut(s) 36, 37, 229
Bsp1286I GDGCHC 2 cut(s) 114, 245
Bsp143I GATC 5 cut(s) 76, 208, 300, 363, 427
Bsp19I CCATGG 1 cut(s) 223
BspACI CCGC 2 cut(s) 84, 308
BspPI GGATC 5 cut(s) 71, 203, 295, 358, 422
BspT107I GGYRCC 1 cut(s) 26
BssECI CCNNGG 2 cut(s) 22, 223
BssMI GATC 5 cut(s) 76, 208, 300, 363, 427
BssT1I CCWWGG 1 cut(s) 223
BstDSI CCRYGG 1 cut(s) 223
BstKTI GATC 5 cut(s) 79, 211, 303, 366, 430
BstMBI GATC 5 cut(s) 76, 208, 300, 363, 427
BstSCI CCNGG 2 cut(s) 107, 238
BstXI CCANNNNNNTGG 1 cut(s) 97
BtgI CCRYGG 1 cut(s) 223
Csp6I GTAC 4 cut(s) 27, 219, 374, 437
CviAII CATG 1 cut(s) 224
CviQI GTAC 4 cut(s) 27, 219, 374, 437
DpnI GATC 5 cut(s) 78, 210, 302, 365, 429
DpnII GATC 5 cut(s) 76, 208, 300, 363, 427
Eco130I CCWWGG 1 cut(s) 223
Eco24I GRGCYC 2 cut(s) 114, 245
EcoT14I CCWWGG 1 cut(s) 223
EcoT38I GRGCYC 2 cut(s) 114, 245
ErhI CCWWGG 1 cut(s) 223
FaeI CATG 1 cut(s) 227
FaiI YATR 1 cut(s) 225
FatI CATG 1 cut(s) 223
FauI CCCGC 2 cut(s) 91, 315
FriOI GRGCYC 2 cut(s) 114, 245
HapII CCGG 2 cut(s) 108, 239
Hin1II CATG 1 cut(s) 227
HinfI GANTC 1 cut(s) 369
HpaII CCGG 2 cut(s) 108, 239
Hpy166II GTNNAC 1 cut(s) 295
Hpy188I TCNGA 9 cut(s) 52, 116, 148, 247, 279, 339, 368, 403, 467
Hpy8I GTNNAC 1 cut(s) 295
Hpy99I CGWCG 3 cut(s) 127, 414, 478
Hsp92II CATG 1 cut(s) 227
KpnI GGTACC 1 cut(s) 30
Kzo9I GATC 5 cut(s) 76, 208, 300, 363, 427
LpnPI CCDG 3 cut(s) 121, 252, 447
MalI GATC 5 cut(s) 78, 210, 302, 365, 429
MboI GATC 5 cut(s) 76, 208, 300, 363, 427
MhlI GDGCHC 2 cut(s) 114, 245
MlyI GAGTC 1 cut(s) 363
MmeI TCCRAC 1 cut(s) 391
MspI CCGG 2 cut(s) 108, 239
MspR9I CCNGG 2 cut(s) 109, 240
NciI CCSGG 2 cut(s) 109, 240
NcoI CCATGG 1 cut(s) 223
NdeII GATC 5 cut(s) 76, 208, 300, 363, 427
NlaIII CATG 1 cut(s) 227
PflMI CCANNNNNTGG 1 cut(s) 229
PleI GAGTC 1 cut(s) 363
PpsI GAGTC 1 cut(s) 363
RsaI GTAC 4 cut(s) 28, 220, 375, 438
RsaNI GTAC 4 cut(s) 27, 219, 374, 437
Sau3AI GATC 5 cut(s) 76, 208, 300, 363, 427
SchI GAGTC 1 cut(s) 363
ScrFI CCNGG 2 cut(s) 109, 240
SduI GDGCHC 2 cut(s) 114, 245
SetI ASST 7 cut(s) 45, 141, 177, 272, 332, 396, 460
SsiI CCGC 2 cut(s) 84, 308
StyD4I CCNGG 2 cut(s) 107, 238
StyI CCWWGG 1 cut(s) 223
TaqI TCGA 2 cut(s) 183, 345
Van91I CCANNNNNTGG 1 cut(s) 229
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.