Rh1BG433700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0000385
Physical Location & Seq
Forward (+)
54898960 .. 54899256
297 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG433700.1

Sequence Viewer

Length: 297 bp
ATGGCCGAGGAAGATGTCACTACCAACAACAATGAAGGCCAAGGCGGAGGTGGGGCAGATTTGGGAGAGATTGAAGTTGGGATGCTTGGATCCGGGGTGATTGGAGGTGATGAAGTTGGGGAGGTGGCCATTGAAGGCCACTCCTTGAAAAACTCGATGGAGGAAGTGAGGCTCAACCTTAAGGAGAACAATGTCGAGGAGTTGGTAAAGACAAAGGTAGGAGGCCTTAGTGATTCTGCAAGTGAGGCGGAGTCAGCCAACGAGGGGCAACAGGGAGGTGCCAAGAAGTCTGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

98

Amino Acids

9.92

Weight (kDa)

4.21

Isoelectric Point (pI)

37.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000385)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g23713 FvH4_1g25744 FvH4_2g00261 FvH4_2g00262 FvH4_2g15681 FvH4_2g17851 FvH4_2g35550 FvH4_3g05280 FvH4_3g10531 FvH4_3g25910 FvH4_3g28953 FvH4_3g33371 FvH4_3g33536 FvH4_3g36090 FvH4_4g03471 FvH4_4g03480 FvH4_4g06701 FvH4_4g19351 FvH4_4g34281 FvH4_5g00040 FvH4_5g03811 FvH4_5g03812 FvH4_5g11822 FvH4_5g30921 FvH4_5g31701 FvH4_6g12161 FvH4_6g15222 FvH4_6g15223 FvH4_6g17701 FvH4_6g17710 FvH4_6g19301 FvH4_6g33011 FvH4_6g34501 FvH4_6g50161 FvH4_7g04111 FvH4_7g04120 FvH4_7g04121 FvH4_7g04122 FvH4_7g04123 FvH4_7g28231 FvH4_c7g00010
malus_domestica MD12G1084200.v1.1
prunus_persica Prupe.1G206200_v2.0.a1 Prupe.8G085600_v2.0.a1
pyrus_communis pycom01g11080 pycom02g20500 pycom09g18370 pycom12555g00210 pycom13g23120 pycom14g10590 pycom16g17620 pycom16g22750
rosa_chinensis RchiOBHm_Chr2g0137481 RchiOBHm_Chr6g0251961 RchiOBHm_Chr7g0185821
rosa_laevigata RLG00000005585 RLG00000010281 RLG00000010912 RLG00000030342 RLG00000034281
rosa_multiflora Rmu_sc0000096.1_g000010 Rmu_sc0002481.1_g000045 Rmu_sc0003598.1_g000009 Rmu_sc0003863.1_g000019 Rmu_sc0003973.1_g000002 Rmu_sc0004823.1_g000050 Rmu_sc0005621.1_g000007 Rmu_sc0006537.1_g000030 Rmu_sc0006608.1_g000014 Rmu_sc0008506.1_g000007 Rmu_sc0014428.1_g000001 Rmu_sc0035437.1_g000001 Rmu_ssc0000396.1_g000022
rosa_roxburghii Rroxscaffold_175G00432300 Rroxscaffold_17G00435390 Rroxscaffold_27G00446590 Rroxscaffold_29G00441820 Rroxscaffold_31G00438110 Rroxscaffold_32G00442750 Rroxscaffold_33G00439810 Rroxscaffold_37G00445160 Rroxscaffold_4G00306500 Rroxscaffold_4G00327700 Rroxscaffold_4G00332630 Rroxscaffold_52G00439360 Rroxscaffold_63G00444420 Rroxscaffold_76G00448580 Rroxscaffold_7G00156270
rosa_rugosa Rorug03G0295200
rosa_samantha Rh1BG433700 Rh1CG115400 Rh2AG676300 Rh2CG341800 Rh2DG381400 Rh3BG370100 Rh3BG370200 Rh4AG441600 Rh4BG076500 Rh4BG107400 Rh5BG005600 Rh6BG010100 Rh7BG000200
rosa_wichuraiana Rw0G003820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 278
AciI CCGC 2 cut(s) 45, 248
AclWI GGATC 2 cut(s) 84, 97
AcoI YGGCCR 2 cut(s) 3, 126
AfiI CCNNNNNNNGG 1 cut(s) 264
AflII CTTAAG 1 cut(s) 179
AgsI TTSAA 3 cut(s) 74, 134, 148
AlwI GGATC 2 cut(s) 84, 97
AoxI GGCC 5 cut(s) 3, 37, 126, 136, 223
AsuC2I CCSGG 1 cut(s) 94
AsuHPI GGTGA 2 cut(s) 109, 119
BalI TGGCCA 1 cut(s) 128
BamHI GGATCC 1 cut(s) 89
BanI GGYRCC 1 cut(s) 278
BccI CCATC 1 cut(s) 151
BcnI CCSGG 1 cut(s) 94
BfrI CTTAAG 1 cut(s) 179
Bme1390I CCNGG 1 cut(s) 94
BmiI GGNNCC 2 cut(s) 91, 280
BmrFI CCNGG 1 cut(s) 94
BmsI GCATC 1 cut(s) 72
BpuMI CCSGG 1 cut(s) 94
BsaJI CCNNGG 3 cut(s) 6, 40, 93
Bsc4I CCNNNNNNNGG 1 cut(s) 264
BseDI CCNNGG 3 cut(s) 6, 40, 93
BseGI GGATG 1 cut(s) 87
BseLI CCNNNNNNNGG 1 cut(s) 264
BseRI GAGGAG 1 cut(s) 212
BshFI GGCC 5 cut(s) 5, 39, 128, 138, 225
BshNI GGYRCC 1 cut(s) 278
BsiSI CCGG 1 cut(s) 93
BslI CCNNNNNNNGG 1 cut(s) 264
BsnI GGCC 5 cut(s) 5, 39, 128, 138, 225
Bsp143I GATC 1 cut(s) 89
BspACI CCGC 2 cut(s) 45, 248
BspANI GGCC 5 cut(s) 5, 39, 128, 138, 225
BspLI GGNNCC 2 cut(s) 91, 280
BspPI GGATC 2 cut(s) 84, 97
BspT107I GGYRCC 1 cut(s) 278
BspTI CTTAAG 1 cut(s) 179
BssECI CCNNGG 3 cut(s) 6, 40, 93
BssMI GATC 1 cut(s) 89
BssT1I CCWWGG 1 cut(s) 40
BstAFI CTTAAG 1 cut(s) 179
BstDEI CTNAG 1 cut(s) 227
BstF5I GGATG 1 cut(s) 87
BstKTI GATC 1 cut(s) 92
BstMBI GATC 1 cut(s) 89
BstMWI GCNNNNNNNGC 2 cut(s) 245, 254
BstSCI CCNGG 1 cut(s) 92
BstX2I RGATCY 1 cut(s) 89
BstYI RGATCY 1 cut(s) 89
BsuRI GGCC 5 cut(s) 5, 39, 128, 138, 225
BtsCI GGATG 1 cut(s) 87
CviJI RGCY 7 cut(s) 5, 39, 128, 138, 172, 225, 257
CviKI_1 RGCY 7 cut(s) 5, 39, 128, 138, 172, 225, 257
DdeI CTNAG 1 cut(s) 227
DpnI GATC 1 cut(s) 91
DpnII GATC 1 cut(s) 89
EaeI YGGCCR 2 cut(s) 3, 126
EciI GGCGGA 2 cut(s) 60, 263
Eco130I CCWWGG 1 cut(s) 40
Eco147I AGGCCT 1 cut(s) 225
EcoT14I CCWWGG 1 cut(s) 40
ErhI CCWWGG 1 cut(s) 40
FokI GGATG 1 cut(s) 94
HaeIII GGCC 5 cut(s) 5, 39, 128, 138, 225
HapII CCGG 1 cut(s) 93
HinfI GANTC 2 cut(s) 233, 251
HpaII CCGG 1 cut(s) 93
HphI GGTGA 2 cut(s) 109, 119
HpyAV CCTTC 2 cut(s) 29, 128
HpyCH4V TGCA 1 cut(s) 239
HpyF10VI GCNNNNNNNGC 2 cut(s) 245, 254
HpyF3I CTNAG 1 cut(s) 227
Kzo9I GATC 1 cut(s) 89
LpnPI CCDG 2 cut(s) 106, 257
LweI GCATC 1 cut(s) 72
MaeIII GTNAC 1 cut(s) 16
MalI GATC 1 cut(s) 91
MboI GATC 1 cut(s) 89
MboII GAAGA 1 cut(s) 23
MflI RGATCY 1 cut(s) 89
MlsI TGGCCA 1 cut(s) 128
MluNI TGGCCA 1 cut(s) 128
MlyI GAGTC 1 cut(s) 260
Mox20I TGGCCA 1 cut(s) 128
MscI TGGCCA 1 cut(s) 128
MseI TTAA 2 cut(s) 180, 295
Msp20I TGGCCA 1 cut(s) 128
MspCI CTTAAG 1 cut(s) 179
MspI CCGG 1 cut(s) 93
MspR9I CCNGG 1 cut(s) 94
MwoI GCNNNNNNNGC 2 cut(s) 245, 254
NciI CCSGG 1 cut(s) 94
NdeII GATC 1 cut(s) 89
NlaIV GGNNCC 2 cut(s) 91, 280
NmeAIII GCCGAG 1 cut(s) 31
NmuCI GTSAC 1 cut(s) 16
PceI AGGCCT 1 cut(s) 225
PfeI GAWTC 1 cut(s) 233
PleI GAGTC 1 cut(s) 259
PpsI GAGTC 1 cut(s) 259
PspN4I GGNNCC 2 cut(s) 91, 280
PsuI RGATCY 1 cut(s) 89
SaqAI TTAA 2 cut(s) 180, 295
Sau3AI GATC 1 cut(s) 89
SchI GAGTC 1 cut(s) 260
ScrFI CCNGG 1 cut(s) 94
SetI ASST 6 cut(s) 52, 109, 126, 180, 219, 280
SfaNI GCATC 1 cut(s) 72
SmlI CTYRAG 1 cut(s) 179
SmoI CTYRAG 1 cut(s) 179
SseBI AGGCCT 1 cut(s) 225
SsiI CCGC 2 cut(s) 45, 248
StuI AGGCCT 1 cut(s) 225
StyD4I CCNGG 1 cut(s) 92
StyI CCWWGG 1 cut(s) 40
TaqI TCGA 2 cut(s) 155, 195
TfiI GAWTC 1 cut(s) 233
Tru1I TTAA 2 cut(s) 180, 295
Tru9I TTAA 2 cut(s) 180, 295
TseFI GTSAC 1 cut(s) 16
Tsp45I GTSAC 1 cut(s) 16
TspDTI ATGAA 2 cut(s) 48, 126
Vha464I CTTAAG 1 cut(s) 179
XcmI CCANNNNNNNNNTGG 1 cut(s) 47
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.