Rroxscaffold_76G00448580

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000076
OG0000385
Physical Location & Seq
Reverse (-)
25868 .. 46387
20520 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_76G00448580.1

Sequence Viewer

Length: 1908 bp
ATGGCGGGACTTTCTACAAAGGAGCGCATCGAAAGACTCGAAGGATTTGTTGGTGACCCAAGGATCGATGGGGCGGAGGCCTTATCATTATCTGTCCAATGTTCAAGAATGGAGGAAACCATGAAGGTGATGGATGCAGCTTACAAGGGGTACGTTGCAGAAGTCAATGTTCGGCTAACTTCCATATTGGATGAGTTAGCTAGCCTGAAGGAGATGGTGATGGCAAATGACGACGAGACAAAGTCCAAGGTCCTAGACTTGGAGGAGGAGATCCAGGTTCTGAGGAGGACGAGGAGCAATGAGTGCTTGAATGTCTCTAAGGTCAAAGTGCCGGAACCAAAGGCATTTCATGGTGTTCGGAATGCGAAGGAGTTGGAAAACTTTCTATGGGACATGGAGCAATATTTCGGTGCTGCCCATATTCCAATTCAAGAGCAAGTGTCCATTACGAGCATGTACCTAGCAGGAGACGCCAAACTGTGGTGGCGGACTCGGGTGCAGGACGAGGGCAGGCCAAGAATCAACGAGTGGGAGTCGATGAAAAAGGAATTGAAGGTTCAGTTCCTTCCTTGCAATGCATCGTGGCTTGCAAGGGAATCTCTTCGGAAGCTGCGACACACGAACTCGGTGAGGGAGTTTGTAAAGCAGTTCAGTTCCTTGATGTTGGATGTGTCCAACATGTCAGAGGAAGATAAGCTGTTCAACTTCATGTCGGGATTGCAGCCTTGGGCGCAAAAGGAGTTGCGTAGGCAAGGGGTAAGGGACTTACCAAGTGCAATGACAGCTGCTGACGGCTTGGTGGATTTTGATCTGGATCAGGCTCCTTCAAACGTAGGCAAGGGTGCCTCTTCCAAGAGTGGGAAGAAGTTTGAGAGGAAGGAGAAAGAGAGTGGAAAGGGTTCGAGTTCAAGGAATCAACCCCAAGACAGAAAAAAGTGGAGTTCTGGTTGCTTTATTTGCAAGGGTCCTCATCTAGCACGAGAGTGTCCTAAGAAGGAGCAGTTGAGTGCATTGGTTGCCAATGATTCGGGTGATGATGACTCAGGAGGTGCTTATCTTGGGGGCATGAGATTATTGACTGCCATGACATTGGTCAAGGACAGTTCCAAGGAGGAATTGATGTTCTTGCCAATCAAGGTCGATGGCAACGATGTGCTGGCGATGTTGGACACAGGTGCAACAAGCAGCTTTGTCGCTATGGGAGTGGCAAAGAAACTGGGTTTAAAGATGGTTCCTGATTCGAGCAAGCTGAAAGCGGTGAACTCGGAGGCCAAACCAGTCCATGGAAGCGCAAGAGTGTGCTTGAAGGCTGGAGATTGGGAGGGCGAGTGCTGTTTGTCGGCTGTGCCACTGGATGGTTATGATCTAATCCTTGGTATCGACTTCTTTAAGAAGGCGAAAGTAGGGCTGGTGCCTTACTTGGGAGGGATTCTCATTATGGATGGGAAGTCCCCGTGCTTTGTGAAAGCAAGATTTGCGAGTCAACTGCTGGACCGCAAAGGAAATCAACTTGAGGGTGATGCCCGTCAGTCAATGGCAGGAGTGAAGATTGGGGAAACGAGTCTGGATGCAGCCTTGATGAAGATCAAGCCAGATAAAATGTTCAAAGTACCCAAAGATGATAATGTGGCGCTTCCTCCTTGTCGTATGAAAGGCCACATGATGGAGCTGGAAGCAAGTGCAGGACCTCATGCACAAGCGCTTCATCAGGTGCCAACGAAGATAGTGAAGCAGCGGAGACACTATGGTGTGTTGCAAGGTGCAGGCTGCGGAGAGCTTTCCAATGCTCACTATGGTGCCAAGGTGTTGTTGCAGAGTAGGCAACAAGGTTTGAGTGATCATGGCGCAGGGCCAGCGTCGAAGGTGGTACTCAATGTTCCCAAAAGATGGGGAACGAATGCTCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Asp_protease_2 Chromo RVT_1 Retrotrans_gag gag-asp_proteas rve

Protein Analysis

635

Amino Acids

69.91

Weight (kDa)

8.83

Isoelectric Point (pI)

38.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ty3_capsid PF19259 112 - 263 4.5e-08 Ty3 transposon capsid-like protein
Retrotrans_gag PF03732 149 - 242 2.7e-17 Retrotransposon gag protein
gag-asp_proteas PF13975 377 - 465 1.3e-08 gag-polyprotein putative aspartyl protease
Asp_protease_2 PF13650 377 - 462 5.1e-07 Aspartyl protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000385)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g23713 FvH4_1g25744 FvH4_2g00261 FvH4_2g00262 FvH4_2g15681 FvH4_2g17851 FvH4_2g35550 FvH4_3g05280 FvH4_3g10531 FvH4_3g25910 FvH4_3g28953 FvH4_3g33371 FvH4_3g33536 FvH4_3g36090 FvH4_4g03471 FvH4_4g03480 FvH4_4g06701 FvH4_4g19351 FvH4_4g34281 FvH4_5g00040 FvH4_5g03811 FvH4_5g03812 FvH4_5g11822 FvH4_5g30921 FvH4_5g31701 FvH4_6g12161 FvH4_6g15222 FvH4_6g15223 FvH4_6g17701 FvH4_6g17710 FvH4_6g19301 FvH4_6g33011 FvH4_6g34501 FvH4_6g50161 FvH4_7g04111 FvH4_7g04120 FvH4_7g04121 FvH4_7g04122 FvH4_7g04123 FvH4_7g28231 FvH4_c7g00010
malus_domestica MD12G1084200.v1.1
prunus_persica Prupe.1G206200_v2.0.a1 Prupe.8G085600_v2.0.a1
pyrus_communis pycom01g11080 pycom02g20500 pycom09g18370 pycom12555g00210 pycom13g23120 pycom14g10590 pycom16g17620 pycom16g22750
rosa_chinensis RchiOBHm_Chr2g0137481 RchiOBHm_Chr6g0251961 RchiOBHm_Chr7g0185821
rosa_laevigata RLG00000005585 RLG00000010281 RLG00000010912 RLG00000030342 RLG00000034281
rosa_multiflora Rmu_sc0000096.1_g000010 Rmu_sc0002481.1_g000045 Rmu_sc0003598.1_g000009 Rmu_sc0003863.1_g000019 Rmu_sc0003973.1_g000002 Rmu_sc0004823.1_g000050 Rmu_sc0005621.1_g000007 Rmu_sc0006537.1_g000030 Rmu_sc0006608.1_g000014 Rmu_sc0008506.1_g000007 Rmu_sc0014428.1_g000001 Rmu_sc0035437.1_g000001 Rmu_ssc0000396.1_g000022
rosa_roxburghii Rroxscaffold_175G00432300 Rroxscaffold_17G00435390 Rroxscaffold_27G00446590 Rroxscaffold_29G00441820 Rroxscaffold_31G00438110 Rroxscaffold_32G00442750 Rroxscaffold_33G00439810 Rroxscaffold_37G00445160 Rroxscaffold_4G00306500 Rroxscaffold_4G00327700 Rroxscaffold_4G00332630 Rroxscaffold_52G00439360 Rroxscaffold_63G00444420 Rroxscaffold_76G00448580 Rroxscaffold_7G00156270
rosa_rugosa Rorug03G0295200
rosa_samantha Rh1BG433700 Rh1CG115400 Rh2AG676300 Rh2CG341800 Rh2DG381400 Rh3BG370100 Rh3BG370200 Rh4AG441600 Rh4BG076500 Rh4BG107400 Rh5BG005600 Rh6BG010100 Rh7BG000200
rosa_wichuraiana Rw0G003820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 4 cut(s) 842, 1411, 1711, 1796
AccB7I CCANNNNNTGG 5 cut(s) 480, 1283, 1355, 1663, 1887
AciI CCGC 7 cut(s) 5, 74, 487, 1256, 1495, 1735, 1770
AclWI GGATC 3 cut(s) 71, 265, 822
AcuI CTGAAG 1 cut(s) 227
AcyI GRCGYC 1 cut(s) 471
AfaI GTAC 4 cut(s) 152, 458, 1611, 1869
AfeI AGCGCT 1 cut(s) 1701
AfiI CCNNNNNNNGG 8 cut(s) 259, 480, 858, 1283, 1355, 1421, 1663, 1887
AflIII ACRYGT 1 cut(s) 678
AgsI TTSAA 9 cut(s) 105, 310, 431, 553, 703, 828, 909, 1306, 1606
AjnI CCWGG 1 cut(s) 273
AjuI GAANNNNNNNTTGG 2 cut(s) 33, 65
AleI CACNNNNGTG 3 cut(s) 982, 1746, 1794
AloI GAACNNNNNNTCC 3 cut(s) 1106, 1138, 1885
AluBI AGCT 9 cut(s) 140, 200, 610, 697, 785, 1188, 1249, 1669, 1777
AluI AGCT 9 cut(s) 140, 200, 610, 697, 785, 1188, 1249, 1669, 1777
Alw26I GTCTC 4 cut(s) 230, 319, 462, 1732
AlwI GGATC 3 cut(s) 71, 265, 822
AlwNI CAGNNNCTG 2 cut(s) 280, 788
Ama87I CYCGRG 1 cut(s) 492
Aor51HI AGCGCT 1 cut(s) 1701
AoxI GGCC 5 cut(s) 78, 512, 1269, 1654, 1850
ApeKI GCWGC 9 cut(s) 137, 413, 610, 721, 785, 1185, 1571, 1732, 1767
Asp700I GAANNNNTTC 3 cut(s) 381, 600, 898
AspLEI GCGC 6 cut(s) 27, 733, 1292, 1633, 1702, 1847
AspS9I GGNCC 5 cut(s) 250, 965, 1492, 1685, 1850
AsuHPI GGTGA 7 cut(s) 65, 139, 229, 640, 1043, 1270, 1529
AsuNHI GCTAGC 1 cut(s) 200
AvaI CYCGRG 1 cut(s) 492
AvaII GGWCC 4 cut(s) 250, 965, 1492, 1685
BanI GGYRCC 4 cut(s) 842, 1411, 1711, 1796
BauI CACGAG 1 cut(s) 978
BbvI GCAGC 9 cut(s) 149, 400, 597, 733, 772, 1197, 1583, 1744, 1754
BceAI ACGGC 1 cut(s) 808
BcgI CGANNNNNNTGC 4 cut(s) 1174, 1208, 1468, 1502
BciT130I CCWGG 1 cut(s) 275
BclI TGATCA 1 cut(s) 1837
BcoDI GTCTC 4 cut(s) 230, 319, 462, 1732
BfaI CTAG 4 cut(s) 201, 254, 461, 974
BfoI RGCGCY 2 cut(s) 1634, 1703
BisI GCNGC 9 cut(s) 138, 414, 611, 722, 786, 1186, 1572, 1733, 1768
BlsI GCNGC 9 cut(s) 139, 415, 612, 723, 787, 1187, 1573, 1734, 1769
Bme1390I CCNGG 1 cut(s) 275
Bme18I GGWCC 4 cut(s) 250, 965, 1492, 1685
BmeT110I CYCGRG 1 cut(s) 492
BmgT120I GGNCC 5 cut(s) 250, 965, 1492, 1685, 1850
BmiI GGNNCC 8 cut(s) 336, 822, 844, 966, 1233, 1413, 1713, 1798
BmrFI CCNGG 1 cut(s) 275
BmrI ACTGGG 1 cut(s) 1226
BmsI GCATC 5 cut(s) 36, 124, 587, 1510, 1558
BmtI GCTAGC 1 cut(s) 204
BmuI ACTGGG 1 cut(s) 1226
BoxI GACNNNNGTC 1 cut(s) 1091
BplI GAGNNNNNCTC 2 cut(s) 1416, 1448
BpmI CTGGAG 1 cut(s) 1332
BpuEI CTTGAG 1 cut(s) 1532
Bsa29I ATCGAT 1 cut(s) 66
BsaBI GATNNNNATC 3 cut(s) 807, 813, 1583
BsaHI GRCGYC 1 cut(s) 471
BsaJI CCNNGG 7 cut(s) 59, 246, 725, 1107, 1282, 1372, 1800
BsaXI ACNNNNNCTCC 5 cut(s) 931, 961, 1313, 1343, 1885
Bsc4I CCNNNNNNNGG 8 cut(s) 259, 480, 858, 1283, 1355, 1421, 1663, 1887
Bse1I ACTGG 3 cut(s) 1221, 1277, 1356
Bse3DI GCAATG 3 cut(s) 304, 580, 783
Bse8I GATNNNNATC 3 cut(s) 807, 813, 1583
BseBI CCWGG 1 cut(s) 275
BseCI ATCGAT 1 cut(s) 66
BseDI CCNNGG 7 cut(s) 59, 246, 725, 1107, 1282, 1372, 1800
BseGI GGATG 6 cut(s) 139, 196, 673, 1360, 1447, 1573
BseJI GATNNNNATC 3 cut(s) 807, 813, 1583
BseLI CCNNNNNNNGG 8 cut(s) 259, 480, 858, 1283, 1355, 1421, 1663, 1887
BseMI GCAATG 3 cut(s) 304, 580, 783
BseMII CTCAG 2 cut(s) 272, 1056
BseNI ACTGG 3 cut(s) 1221, 1277, 1356
BseRI GAGGAG 4 cut(s) 278, 281, 298, 307
BseXI GCAGC 9 cut(s) 149, 400, 597, 733, 772, 1197, 1583, 1744, 1754
BsgI GTGCAG 3 cut(s) 518, 1701, 1782
BshFI GGCC 5 cut(s) 80, 514, 1271, 1656, 1852
BshNI GGYRCC 4 cut(s) 842, 1411, 1711, 1796
BshVI ATCGAT 1 cut(s) 66
BsiHKCI CYCGRG 1 cut(s) 492
BsiSI CCGG 1 cut(s) 332
BslFI GGGAC 4 cut(s) 21, 404, 776, 1435
BslI CCNNNNNNNGG 8 cut(s) 259, 480, 858, 1283, 1355, 1421, 1663, 1887
BsmAI GTCTC 4 cut(s) 230, 319, 462, 1732
BsmBI CGTCTC 1 cut(s) 462
BsmFI GGGAC 4 cut(s) 21, 404, 776, 1435
BsmI GAATGC 2 cut(s) 367, 1903
BsnI GGCC 5 cut(s) 80, 514, 1271, 1656, 1852
BsoBI CYCGRG 1 cut(s) 492
Bsp143I GATC 7 cut(s) 63, 270, 808, 814, 1363, 1584, 1837
Bsp19I CCATGG 1 cut(s) 1282
BspACI CCGC 7 cut(s) 5, 74, 487, 1256, 1495, 1735, 1770
BspANI GGCC 5 cut(s) 80, 514, 1271, 1656, 1852
BspCNI CTCAG 2 cut(s) 273, 1055
BspDI ATCGAT 1 cut(s) 66
BspLI GGNNCC 8 cut(s) 336, 822, 844, 966, 1233, 1413, 1713, 1798
BspOI GCTAGC 1 cut(s) 204
BspPI GGATC 3 cut(s) 71, 265, 822
BspT107I GGYRCC 4 cut(s) 842, 1411, 1711, 1796
BsrDI GCAATG 3 cut(s) 304, 580, 783
BsrI ACTGG 3 cut(s) 1221, 1277, 1356
BssECI CCNNGG 7 cut(s) 59, 246, 725, 1107, 1282, 1372, 1800
BssMI GATC 7 cut(s) 63, 270, 808, 814, 1363, 1584, 1837
BssNI GRCGYC 1 cut(s) 471
BssSI CACGAG 1 cut(s) 978
BssT1I CCWWGG 7 cut(s) 59, 246, 725, 1107, 1282, 1372, 1800
Bst2BI CACGAG 1 cut(s) 978
Bst2UI CCWGG 1 cut(s) 275
Bst4CI ACNGT 2 cut(s) 480, 1103
Bst6I CTCTTC 2 cut(s) 606, 853
BstACI GRCGYC 1 cut(s) 471
BstAPI GCANNNNNTGC 3 cut(s) 303, 1016, 1475
BstC8I GCNNGC 7 cut(s) 202, 512, 588, 1158, 1247, 1765, 1854
BstDEI CTNAG 4 cut(s) 281, 318, 990, 1042
BstDSI CCRYGG 1 cut(s) 1282
BstEII GGTNACC 1 cut(s) 53
BstF5I GGATG 6 cut(s) 139, 196, 673, 1360, 1447, 1573
BstH2I RGCGCY 2 cut(s) 1634, 1703
BstHHI GCGC 6 cut(s) 27, 733, 1292, 1633, 1702, 1847
BstKTI GATC 7 cut(s) 66, 273, 811, 817, 1366, 1587, 1840
BstMAI GTCTC 4 cut(s) 230, 319, 462, 1732
BstMBI GATC 7 cut(s) 63, 270, 808, 814, 1363, 1584, 1837
BstMWI GCNNNNNNNGC 9 cut(s) 303, 470, 730, 782, 957, 1016, 1475, 1819, 1853
BstNI CCWGG 1 cut(s) 275
BstNSI RCATGY 2 cut(s) 457, 682
BstPAI GACNNNNGTC 1 cut(s) 1091
BstPI GGTNACC 1 cut(s) 53
BstSCI CCNGG 1 cut(s) 273
BstV1I GCAGC 9 cut(s) 149, 400, 597, 733, 772, 1197, 1583, 1744, 1754
BstX2I RGATCY 1 cut(s) 270
BstXI CCANNNNNNTGG 1 cut(s) 1090
BstYI RGATCY 1 cut(s) 270
Bsu15I ATCGAT 1 cut(s) 66
BsuRI GGCC 5 cut(s) 80, 514, 1271, 1656, 1852
BsuTUI ATCGAT 1 cut(s) 66
BtgI CCRYGG 1 cut(s) 1282
BtgZI GCGATG 1 cut(s) 1175
BtsCI GGATG 6 cut(s) 139, 196, 673, 1360, 1447, 1573
BtsIMutI CAGTG 1 cut(s) 1349
Cac8I GCNNGC 7 cut(s) 202, 512, 588, 1158, 1247, 1765, 1854
CaiI CAGNNNCTG 2 cut(s) 280, 788
CfoI GCGC 6 cut(s) 27, 733, 1292, 1633, 1702, 1847
Cfr13I GGNCC 5 cut(s) 250, 965, 1492, 1685, 1850
ClaI ATCGAT 1 cut(s) 66
CseI GACGC 2 cut(s) 479, 1845
Csp6I GTAC 4 cut(s) 151, 457, 1610, 1868
CviQI GTAC 4 cut(s) 151, 457, 1610, 1868
DdeI CTNAG 4 cut(s) 281, 318, 990, 1042
DpnI GATC 7 cut(s) 65, 272, 810, 816, 1365, 1586, 1839
DpnII GATC 7 cut(s) 63, 270, 808, 814, 1363, 1584, 1837
DraI TTTAAA 1 cut(s) 1224
Eam1104I CTCTTC 2 cut(s) 606, 853
EarI CTCTTC 2 cut(s) 606, 853
EciI GGCGGA 2 cut(s) 89, 502
Eco130I CCWWGG 7 cut(s) 59, 246, 725, 1107, 1282, 1372, 1800
Eco147I AGGCCT 1 cut(s) 80
Eco47I GGWCC 4 cut(s) 250, 965, 1492, 1685
Eco47III AGCGCT 1 cut(s) 1701
Eco57I CTGAAG 1 cut(s) 227
Eco88I CYCGRG 1 cut(s) 492
Eco91I GGTNACC 1 cut(s) 53
EcoO109I RGGNCCY 3 cut(s) 250, 965, 1685
EcoO65I GGTNACC 1 cut(s) 53
EcoRII CCWGG 1 cut(s) 273
EcoT14I CCWWGG 7 cut(s) 59, 246, 725, 1107, 1282, 1372, 1800
EcoT22I ATGCAT 1 cut(s) 580
ErhI CCWWGG 7 cut(s) 59, 246, 725, 1107, 1282, 1372, 1800
Esp3I CGTCTC 1 cut(s) 462
FaqI GGGAC 4 cut(s) 21, 404, 776, 1435
FbaI TGATCA 1 cut(s) 1837
Fnu4HI GCNGC 9 cut(s) 138, 414, 611, 722, 786, 1186, 1572, 1733, 1768
FokI GGATG 6 cut(s) 146, 203, 680, 1367, 1454, 1580
Fsp4HI GCNGC 9 cut(s) 138, 414, 611, 722, 786, 1186, 1572, 1733, 1768
FspBI CTAG 4 cut(s) 201, 254, 461, 974
GlaI GCGC 6 cut(s) 26, 732, 1291, 1632, 1701, 1846
GluI GCNGC 9 cut(s) 138, 414, 611, 722, 786, 1186, 1572, 1733, 1768
GsuI CTGGAG 1 cut(s) 1332
HaeII RGCGCY 2 cut(s) 1634, 1703
HaeIII GGCC 5 cut(s) 80, 514, 1271, 1656, 1852
HapII CCGG 1 cut(s) 332
HgaI GACGC 2 cut(s) 479, 1845
HhaI GCGC 6 cut(s) 27, 733, 1292, 1633, 1702, 1847
Hin1I GRCGYC 1 cut(s) 471
Hin6I GCGC 6 cut(s) 25, 731, 1290, 1631, 1700, 1845
HinP1I GCGC 6 cut(s) 25, 731, 1290, 1631, 1700, 1845
HincII GTYRAC 1 cut(s) 1484
HindII GTYRAC 1 cut(s) 1484
HpaII CCGG 1 cut(s) 332
HphI GGTGA 7 cut(s) 65, 139, 229, 640, 1043, 1270, 1529
Hpy166II GTNNAC 2 cut(s) 1261, 1484
Hpy188I TCNGA 5 cut(s) 282, 360, 606, 685, 1267
Hpy188III TCNNGA 7 cut(s) 105, 431, 714, 812, 1044, 1235, 1565
Hpy8I GTNNAC 2 cut(s) 1261, 1484
Hpy99I CGWCG 2 cut(s) 236, 1861
HpyCH4III ACNGT 2 cut(s) 480, 1103
HpyCH4IV ACGT 2 cut(s) 153, 831
HpyF10VI GCNNNNNNNGC 9 cut(s) 303, 470, 730, 782, 957, 1016, 1475, 1819, 1853
HpyF3I CTNAG 4 cut(s) 281, 318, 990, 1042
HpySE526I ACGT 2 cut(s) 153, 831
Hsp92I GRCGYC 1 cut(s) 471
HspAI GCGC 6 cut(s) 25, 731, 1290, 1631, 1700, 1845
Ksp22I TGATCA 1 cut(s) 1837
Kzo9I GATC 7 cut(s) 63, 270, 808, 814, 1363, 1584, 1837
LmnI GCTCC 7 cut(s) 22, 294, 397, 826, 997, 1666, 1906
Lsp1109I GCAGC 9 cut(s) 149, 400, 597, 733, 772, 1197, 1583, 1744, 1754
LweI GCATC 5 cut(s) 36, 124, 587, 1510, 1558
MaeI CTAG 4 cut(s) 201, 254, 461, 974
MaeII ACGT 2 cut(s) 153, 831
MaeIII GTNAC 1 cut(s) 53
MalI GATC 7 cut(s) 65, 272, 810, 816, 1365, 1586, 1839
MboI GATC 7 cut(s) 63, 270, 808, 814, 1363, 1584, 1837
MboII GAAGA 7 cut(s) 593, 701, 840, 874, 1558, 1594, 1732
MflI RGATCY 1 cut(s) 270
MluCI AATT 3 cut(s) 426, 548, 1115
MlyI GAGTC 6 cut(s) 30, 484, 542, 1034, 1489, 1570
MmeI TCCRAC 4 cut(s) 354, 645, 699, 1146
Mph1103I ATGCAT 1 cut(s) 580
MroXI GAANNNNTTC 3 cut(s) 381, 600, 898
MseI TTAA 2 cut(s) 1223, 1389
MslI CAYNNNNRTG 4 cut(s) 125, 982, 1746, 1794
MspA1I CMGCKG 2 cut(s) 785, 1735
MspI CCGG 1 cut(s) 332
MspR9I CCNGG 1 cut(s) 275
Mva1269I GAATGC 2 cut(s) 367, 1903
MvaI CCWGG 1 cut(s) 275
MwoI GCNNNNNNNGC 9 cut(s) 303, 470, 730, 782, 957, 1016, 1475, 1819, 1853
NcoI CCATGG 1 cut(s) 1282
NdeII GATC 7 cut(s) 63, 270, 808, 814, 1363, 1584, 1837
NheI GCTAGC 1 cut(s) 200
NlaIV GGNNCC 8 cut(s) 336, 822, 844, 966, 1233, 1413, 1713, 1798
NmuCI GTSAC 1 cut(s) 53
NsiI ATGCAT 1 cut(s) 580
NspI RCATGY 2 cut(s) 457, 682
OliI CACNNNNGTG 3 cut(s) 982, 1746, 1794
PceI AGGCCT 1 cut(s) 80
PciI ACATGT 1 cut(s) 678
PcsI WCGNNNNNNNCGW 3 cut(s) 36, 610, 1146
PctI GAATGC 2 cut(s) 367, 1903
PdmI GAANNNNTTC 3 cut(s) 381, 600, 898
PfeI GAWTC 6 cut(s) 519, 596, 913, 1025, 1238, 1429
PflFI GACNNNGTC 1 cut(s) 241
PflMI CCANNNNNTGG 5 cut(s) 480, 1283, 1355, 1663, 1887
PkrI GCNGC 9 cut(s) 139, 415, 612, 723, 787, 1187, 1573, 1734, 1769
PleI GAGTC 6 cut(s) 30, 484, 541, 1034, 1488, 1569
PpsI GAGTC 6 cut(s) 30, 484, 541, 1034, 1488, 1569
PpuMI RGGWCCY 3 cut(s) 250, 965, 1685
PscI ACATGT 1 cut(s) 678
PshAI GACNNNNGTC 1 cut(s) 1091
Psp5II RGGWCCY 3 cut(s) 250, 965, 1685
Psp6I CCWGG 1 cut(s) 273
PspEI GGTNACC 1 cut(s) 53
PspGI CCWGG 1 cut(s) 273
PspN4I GGNNCC 8 cut(s) 336, 822, 844, 966, 1233, 1413, 1713, 1798
PspPI GGNCC 5 cut(s) 250, 965, 1492, 1685, 1850
PspPPI RGGWCCY 3 cut(s) 250, 965, 1685
PsrI GAACNNNNNNTAC 2 cut(s) 1860, 1892
PstNI CAGNNNCTG 2 cut(s) 280, 788
PsuI RGATCY 1 cut(s) 270
PsyI GACNNNGTC 1 cut(s) 241
PvuII CAGCTG 1 cut(s) 785
RsaI GTAC 4 cut(s) 152, 458, 1611, 1869
RsaNI GTAC 4 cut(s) 151, 457, 1610, 1868
RseI CAYNNNNRTG 4 cut(s) 125, 982, 1746, 1794
SaqAI TTAA 2 cut(s) 1223, 1389
SatI GCNGC 9 cut(s) 138, 414, 611, 722, 786, 1186, 1572, 1733, 1768
Sau3AI GATC 7 cut(s) 63, 270, 808, 814, 1363, 1584, 1837
Sau96I GGNCC 5 cut(s) 250, 965, 1492, 1685, 1850
SchI GAGTC 6 cut(s) 30, 484, 542, 1034, 1489, 1570
ScrFI CCNGG 1 cut(s) 275
SfaNI GCATC 5 cut(s) 36, 124, 587, 1510, 1558
SinI GGWCC 4 cut(s) 250, 965, 1492, 1685
SmiMI CAYNNNNRTG 4 cut(s) 125, 982, 1746, 1794
SmlI CTYRAG 1 cut(s) 1511
SmoI CTYRAG 1 cut(s) 1511
Sse9I AATT 3 cut(s) 426, 548, 1115
SseBI AGGCCT 1 cut(s) 80
SsiI CCGC 7 cut(s) 5, 74, 487, 1256, 1495, 1735, 1770
SspI AATATT 1 cut(s) 404
SspMI CTAG 4 cut(s) 201, 254, 461, 974
StuI AGGCCT 1 cut(s) 80
StyD4I CCNGG 1 cut(s) 273
StyI CCWWGG 7 cut(s) 59, 246, 725, 1107, 1282, 1372, 1800
TaaI ACNGT 2 cut(s) 480, 1103
TaiI ACGT 2 cut(s) 156, 834
TaqI TCGA 9 cut(s) 30, 39, 66, 536, 902, 1140, 1241, 1380, 1859
TasI AATT 3 cut(s) 426, 548, 1115
TfiI GAWTC 6 cut(s) 519, 596, 913, 1025, 1238, 1429
Tru1I TTAA 2 cut(s) 1223, 1389
Tru9I TTAA 2 cut(s) 1223, 1389
TscAI CASTG 1 cut(s) 1356
TseFI GTSAC 1 cut(s) 53
TseI GCWGC 9 cut(s) 137, 413, 610, 721, 785, 1185, 1571, 1732, 1767
Tsp45I GTSAC 1 cut(s) 53
TspDTI ATGAA 7 cut(s) 137, 338, 554, 697, 1595, 1664, 1694
TspRI CASTG 1 cut(s) 1356
Tth111I GACNNNGTC 1 cut(s) 241
Van91I CCANNNNNTGG 5 cut(s) 480, 1283, 1355, 1663, 1887
VpaK11BI GGWCC 4 cut(s) 250, 965, 1492, 1685
XceI RCATGY 2 cut(s) 457, 682
XcmI CCANNNNNNNNNTGG 1 cut(s) 127
XmnI GAANNNNTTC 3 cut(s) 381, 600, 898
XspI CTAG 4 cut(s) 201, 254, 461, 974
Zsp2I ATGCAT 1 cut(s) 580
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.