Rmu_sc0014428.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0014428.1
OG0000385
Physical Location & Seq
Reverse (-)
2 .. 1015
1014 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0014428.1_g000001.1.cds

Sequence Viewer

Length: 339 bp
aacttgcgggggtgcccgacaggttgattgatgtcaccaatgtgttggaccgcgtcgacctagatgggttggcggcgcggatgatagaggtggagagcctaagggaccgatttgtggcccttgaaaaatgtaaagctcgaggaggtggaagggagagagatgaggaagaatttcccgttccaaacgagcaaatgggtgcaatgagtgatgcccttgacacactccaggtgacagtggacaatatggcagaagatgtccaagccaccattgatgcattcaggaacgagctggtggagatgagtaccaagctcaacctgaccatccgtgcgatgggaaacc
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

112

Amino Acids

12.41

Weight (kDa)

4.37

Isoelectric Point (pI)

35.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000385)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g23713 FvH4_1g25744 FvH4_2g00261 FvH4_2g00262 FvH4_2g15681 FvH4_2g17851 FvH4_2g35550 FvH4_3g05280 FvH4_3g10531 FvH4_3g25910 FvH4_3g28953 FvH4_3g33371 FvH4_3g33536 FvH4_3g36090 FvH4_4g03471 FvH4_4g03480 FvH4_4g06701 FvH4_4g19351 FvH4_4g34281 FvH4_5g00040 FvH4_5g03811 FvH4_5g03812 FvH4_5g11822 FvH4_5g30921 FvH4_5g31701 FvH4_6g12161 FvH4_6g15222 FvH4_6g15223 FvH4_6g17701 FvH4_6g17710 FvH4_6g19301 FvH4_6g33011 FvH4_6g34501 FvH4_6g50161 FvH4_7g04111 FvH4_7g04120 FvH4_7g04121 FvH4_7g04122 FvH4_7g04123 FvH4_7g28231 FvH4_c7g00010
malus_domestica MD12G1084200.v1.1
prunus_persica Prupe.1G206200_v2.0.a1 Prupe.8G085600_v2.0.a1
pyrus_communis pycom01g11080 pycom02g20500 pycom09g18370 pycom12555g00210 pycom13g23120 pycom14g10590 pycom16g17620 pycom16g22750
rosa_chinensis RchiOBHm_Chr2g0137481 RchiOBHm_Chr6g0251961 RchiOBHm_Chr7g0185821
rosa_laevigata RLG00000005585 RLG00000010281 RLG00000010912 RLG00000030342 RLG00000034281
rosa_multiflora Rmu_sc0000096.1_g000010 Rmu_sc0002481.1_g000045 Rmu_sc0003598.1_g000009 Rmu_sc0003863.1_g000019 Rmu_sc0003973.1_g000002 Rmu_sc0004823.1_g000050 Rmu_sc0005621.1_g000007 Rmu_sc0006537.1_g000030 Rmu_sc0006608.1_g000014 Rmu_sc0008506.1_g000007 Rmu_sc0014428.1_g000001 Rmu_sc0035437.1_g000001 Rmu_ssc0000396.1_g000022
rosa_roxburghii Rroxscaffold_175G00432300 Rroxscaffold_17G00435390 Rroxscaffold_27G00446590 Rroxscaffold_29G00441820 Rroxscaffold_31G00438110 Rroxscaffold_32G00442750 Rroxscaffold_33G00439810 Rroxscaffold_37G00445160 Rroxscaffold_4G00306500 Rroxscaffold_4G00327700 Rroxscaffold_4G00332630 Rroxscaffold_52G00439360 Rroxscaffold_63G00444420 Rroxscaffold_76G00448580 Rroxscaffold_7G00156270
rosa_rugosa Rorug03G0295200
rosa_samantha Rh1BG433700 Rh1CG115400 Rh2AG676300 Rh2CG341800 Rh2DG381400 Rh3BG370100 Rh3BG370200 Rh4AG441600 Rh4BG076500 Rh4BG107400 Rh5BG005600 Rh6BG010100 Rh7BG000200
rosa_wichuraiana Rw0G003820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 12
AccI GTMKAC 1 cut(s) 56
AccII CGCG 2 cut(s) 53, 78
AciI CCGC 4 cut(s) 7, 51, 73, 78
AcsI RAATTY 1 cut(s) 169
AfaI GTAC 1 cut(s) 303
AfiI CCNNNNNNNGG 2 cut(s) 114, 330
AgsI TTSAA 1 cut(s) 124
AjnI CCWGG 1 cut(s) 224
AleI CACNNNNGTG 1 cut(s) 40
AluBI AGCT 3 cut(s) 136, 288, 309
AluI AGCT 3 cut(s) 136, 288, 309
Ama87I CYCGRG 1 cut(s) 137
AoxI GGCC 1 cut(s) 116
ApoI RAATTY 1 cut(s) 169
Asp700I GAANNNNTTC 1 cut(s) 170
AspLEI GCGC 1 cut(s) 78
AspS9I GGNCC 3 cut(s) 48, 105, 117
AsuHPI GGTGA 2 cut(s) 27, 240
AvaI CYCGRG 1 cut(s) 137
AvaII GGWCC 2 cut(s) 48, 105
AxyI CCTNAGG 1 cut(s) 100
BaeGI GKGCMC 1 cut(s) 17
BanI GGYRCC 1 cut(s) 12
BccI CCATC 3 cut(s) 58, 324, 328
BciT130I CCWGG 1 cut(s) 226
BfaI CTAG 1 cut(s) 61
BisI GCNGC 1 cut(s) 74
BlsI GCNGC 1 cut(s) 75
Bme1390I CCNGG 1 cut(s) 226
Bme18I GGWCC 2 cut(s) 48, 105
BmeT110I CYCGRG 1 cut(s) 137
BmgT120I GGNCC 3 cut(s) 48, 105, 117
BmiI GGNNCC 2 cut(s) 14, 106
BmrFI CCNGG 1 cut(s) 226
BmsI GCATC 2 cut(s) 198, 261
BpmI CTGGAG 1 cut(s) 208
Bsc4I CCNNNNNNNGG 2 cut(s) 114, 330
Bse21I CCTNAGG 1 cut(s) 100
Bse3DI GCAATG 1 cut(s) 206
BseBI CCWGG 1 cut(s) 226
BseGI GGATG 2 cut(s) 86, 320
BseLI CCNNNNNNNGG 2 cut(s) 114, 330
BseMI GCAATG 1 cut(s) 206
BseRI GAGGAG 1 cut(s) 155
BseSI GKGCMC 1 cut(s) 17
Bsh1236I CGCG 2 cut(s) 53, 78
BshFI GGCC 1 cut(s) 118
BshNI GGYRCC 1 cut(s) 12
BsiHKCI CYCGRG 1 cut(s) 137
BslFI GGGAC 1 cut(s) 118
BslI CCNNNNNNNGG 2 cut(s) 114, 330
BsmFI GGGAC 1 cut(s) 118
BsmI GAATGC 1 cut(s) 274
BsnI GGCC 1 cut(s) 118
BsoBI CYCGRG 1 cut(s) 137
Bsp1286I GDGCHC 1 cut(s) 17
BspACI CCGC 4 cut(s) 7, 51, 73, 78
BspANI GGCC 1 cut(s) 118
BspFNI CGCG 2 cut(s) 53, 78
BspLI GGNNCC 2 cut(s) 14, 106
BspT107I GGYRCC 1 cut(s) 12
BsrDI GCAATG 1 cut(s) 206
Bst2UI CCWGG 1 cut(s) 226
Bst4CI ACNGT 1 cut(s) 234
BstDEI CTNAG 1 cut(s) 100
BstF5I GGATG 2 cut(s) 86, 320
BstFNI CGCG 2 cut(s) 53, 78
BstHHI GCGC 1 cut(s) 78
BstNI CCWGG 1 cut(s) 226
BstSCI CCNGG 1 cut(s) 224
BstSLI GKGCMC 1 cut(s) 17
BstUI CGCG 2 cut(s) 53, 78
BstXI CCANNNNNNTGG 1 cut(s) 45
Bsu36I CCTNAGG 1 cut(s) 100
BsuRI GGCC 1 cut(s) 118
BtsCI GGATG 2 cut(s) 86, 320
BtsIMutI CAGTG 1 cut(s) 239
CfoI GCGC 1 cut(s) 78
Cfr13I GGNCC 3 cut(s) 48, 105, 117
CseI GACGC 1 cut(s) 42
Csp6I GTAC 1 cut(s) 302
CviJI RGCY 6 cut(s) 98, 118, 136, 262, 288, 309
CviKI_1 RGCY 6 cut(s) 98, 118, 136, 262, 288, 309
CviQI GTAC 1 cut(s) 302
DdeI CTNAG 1 cut(s) 100
Eco47I GGWCC 2 cut(s) 48, 105
Eco81I CCTNAGG 1 cut(s) 100
Eco88I CYCGRG 1 cut(s) 137
EcoRII CCWGG 1 cut(s) 224
EcoT22I ATGCAT 1 cut(s) 276
FaiI YATR 1 cut(s) 244
FaqI GGGAC 1 cut(s) 118
FblI GTMKAC 1 cut(s) 56
Fnu4HI GCNGC 1 cut(s) 74
FokI GGATG 2 cut(s) 93, 307
Fsp4HI GCNGC 1 cut(s) 74
FspBI CTAG 1 cut(s) 61
GlaI GCGC 1 cut(s) 77
GluI GCNGC 1 cut(s) 74
GsuI CTGGAG 1 cut(s) 208
HaeIII GGCC 1 cut(s) 118
HgaI GACGC 1 cut(s) 42
HhaI GCGC 1 cut(s) 78
Hin6I GCGC 1 cut(s) 76
HinP1I GCGC 1 cut(s) 76
HincII GTYRAC 1 cut(s) 57
HindII GTYRAC 1 cut(s) 57
HphI GGTGA 2 cut(s) 27, 240
Hpy166II GTNNAC 2 cut(s) 57, 237
Hpy188III TCNNGA 1 cut(s) 279
Hpy8I GTNNAC 2 cut(s) 57, 237
Hpy99I CGWCG 1 cut(s) 58
HpyAV CCTTC 1 cut(s) 143
HpyCH4III ACNGT 1 cut(s) 234
HpyCH4V TGCA 2 cut(s) 199, 274
HpyF3I CTNAG 1 cut(s) 100
HspAI GCGC 1 cut(s) 76
LpnPI CCDG 6 cut(s) 6, 211, 238, 264, 274, 328
LweI GCATC 2 cut(s) 198, 261
MaeI CTAG 1 cut(s) 61
MaeIII GTNAC 2 cut(s) 33, 228
MboII GAAGA 2 cut(s) 178, 262
MhlI GDGCHC 1 cut(s) 17
MluCI AATT 1 cut(s) 169
MmeI TCCRAC 1 cut(s) 26
MnlI CCTC 4 cut(s) 81, 133, 136, 156
Mph1103I ATGCAT 1 cut(s) 276
MroXI GAANNNNTTC 1 cut(s) 170
MslI CAYNNNNRTG 1 cut(s) 40
MspR9I CCNGG 1 cut(s) 226
Mva1269I GAATGC 1 cut(s) 274
MvaI CCWGG 1 cut(s) 226
MvnI CGCG 2 cut(s) 53, 78
NlaIV GGNNCC 2 cut(s) 14, 106
NmuCI GTSAC 2 cut(s) 33, 228
NsiI ATGCAT 1 cut(s) 276
OliI CACNNNNGTG 1 cut(s) 40
PaeR7I CTCGAG 1 cut(s) 137
PctI GAATGC 1 cut(s) 274
PdmI GAANNNNTTC 1 cut(s) 170
PflFI GACNNNGTC 1 cut(s) 52
PkrI GCNGC 1 cut(s) 75
Psp6I CCWGG 1 cut(s) 224
PspGI CCWGG 1 cut(s) 224
PspN4I GGNNCC 2 cut(s) 14, 106
PspPI GGNCC 3 cut(s) 48, 105, 117
PspXI VCTCGAGB 1 cut(s) 137
PsyI GACNNNGTC 1 cut(s) 52
RsaI GTAC 1 cut(s) 303
RsaNI GTAC 1 cut(s) 302
RseI CAYNNNNRTG 1 cut(s) 40
SalI GTCGAC 1 cut(s) 55
SatI GCNGC 1 cut(s) 74
Sau96I GGNCC 3 cut(s) 48, 105, 117
ScrFI CCNGG 1 cut(s) 226
SduI GDGCHC 1 cut(s) 17
SetI ASST 9 cut(s) 25, 62, 92, 138, 147, 230, 290, 311, 317
SfaNI GCATC 2 cut(s) 198, 261
Sfr274I CTCGAG 1 cut(s) 137
SinI GGWCC 2 cut(s) 48, 105
SlaI CTCGAG 1 cut(s) 137
SmiMI CAYNNNNRTG 1 cut(s) 40
SmlI CTYRAG 1 cut(s) 137
SmoI CTYRAG 1 cut(s) 137
Sse9I AATT 1 cut(s) 169
SsiI CCGC 4 cut(s) 7, 51, 73, 78
SspMI CTAG 1 cut(s) 61
StyD4I CCNGG 1 cut(s) 224
TaaI ACNGT 1 cut(s) 234
TaqI TCGA 2 cut(s) 56, 138
TaqII GACCGA 1 cut(s) 122
TasI AATT 1 cut(s) 169
TauI GCSGC 1 cut(s) 76
TscAI CASTG 1 cut(s) 239
TseFI GTSAC 2 cut(s) 33, 228
Tsp45I GTSAC 2 cut(s) 33, 228
TspGWI ACGGA 1 cut(s) 313
TspRI CASTG 1 cut(s) 239
Tth111I GACNNNGTC 1 cut(s) 52
VpaK11BI GGWCC 2 cut(s) 48, 105
XapI RAATTY 1 cut(s) 169
XcmI CCANNNNNNNNNTGG 1 cut(s) 327
XhoI CTCGAG 1 cut(s) 137
XmiI GTMKAC 1 cut(s) 56
XmnI GAANNNNTTC 1 cut(s) 170
XspI CTAG 1 cut(s) 61
Zsp2I ATGCAT 1 cut(s) 276
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.