FvH4_7g04122

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0000385
Physical Location & Seq
Reverse (-)
4716895 .. 4717296
402 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g04122.t1

Sequence Viewer

Length: 402 bp
ATGGGCACTACCCATGATCTGCCACACAACAAAGGGTTACTTTCGTGCTTTATATGCAATGGACCACACTTGGTGAAATTCTGTAGCCAAAAGCAAGCATTGAGTGCTCTAGTTTCAATTGCAAACAACCTCAAAGAAAAAGAAACACAAGAAGAAACAGAGGCAATCATGAGTTCGATGGTGCTACACAATACTTTATCATTGGAGGGTGATATGAAGTATGCTGATTTAGATGTCTATGTTGATATATTTGCCTACCATTATGGGAACTACACCATCATGTCCTCACTCATTGTTGAAGGAGACATCCTTTTTATCGACGAGATTATGCCATTCGAGGATCCACTGCTCTCAACCTACACTATTAAGGAGGCGGAAGTTATTTCTGCTGCCAGACCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

134

Amino Acids

14.85

Weight (kDa)

4.62

Isoelectric Point (pI)

43.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000385)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g23713 FvH4_1g25744 FvH4_2g00261 FvH4_2g00262 FvH4_2g15681 FvH4_2g17851 FvH4_2g35550 FvH4_3g05280 FvH4_3g10531 FvH4_3g25910 FvH4_3g28953 FvH4_3g33371 FvH4_3g33536 FvH4_3g36090 FvH4_4g03471 FvH4_4g03480 FvH4_4g06701 FvH4_4g19351 FvH4_4g34281 FvH4_5g00040 FvH4_5g03811 FvH4_5g03812 FvH4_5g11822 FvH4_5g30921 FvH4_5g31701 FvH4_6g12161 FvH4_6g15222 FvH4_6g15223 FvH4_6g17701 FvH4_6g17710 FvH4_6g19301 FvH4_6g33011 FvH4_6g34501 FvH4_6g50161 FvH4_7g04111 FvH4_7g04120 FvH4_7g04121 FvH4_7g04122 FvH4_7g04123 FvH4_7g28231 FvH4_c7g00010
malus_domestica MD12G1084200.v1.1
prunus_persica Prupe.1G206200_v2.0.a1 Prupe.8G085600_v2.0.a1
pyrus_communis pycom01g11080 pycom02g20500 pycom09g18370 pycom12555g00210 pycom13g23120 pycom14g10590 pycom16g17620 pycom16g22750
rosa_chinensis RchiOBHm_Chr2g0137481 RchiOBHm_Chr6g0251961 RchiOBHm_Chr7g0185821
rosa_laevigata RLG00000005585 RLG00000010281 RLG00000010912 RLG00000030342 RLG00000034281
rosa_multiflora Rmu_sc0000096.1_g000010 Rmu_sc0002481.1_g000045 Rmu_sc0003598.1_g000009 Rmu_sc0003863.1_g000019 Rmu_sc0003973.1_g000002 Rmu_sc0004823.1_g000050 Rmu_sc0005621.1_g000007 Rmu_sc0006537.1_g000030 Rmu_sc0006608.1_g000014 Rmu_sc0008506.1_g000007 Rmu_sc0014428.1_g000001 Rmu_sc0035437.1_g000001 Rmu_ssc0000396.1_g000022
rosa_roxburghii Rroxscaffold_175G00432300 Rroxscaffold_17G00435390 Rroxscaffold_27G00446590 Rroxscaffold_29G00441820 Rroxscaffold_31G00438110 Rroxscaffold_32G00442750 Rroxscaffold_33G00439810 Rroxscaffold_37G00445160 Rroxscaffold_4G00306500 Rroxscaffold_4G00327700 Rroxscaffold_4G00332630 Rroxscaffold_52G00439360 Rroxscaffold_63G00444420 Rroxscaffold_76G00448580 Rroxscaffold_7G00156270
rosa_rugosa Rorug03G0295200
rosa_samantha Rh1BG433700 Rh1CG115400 Rh2AG676300 Rh2CG341800 Rh2DG381400 Rh3BG370100 Rh3BG370200 Rh4AG441600 Rh4BG076500 Rh4BG107400 Rh5BG005600 Rh6BG010100 Rh7BG000200
rosa_wichuraiana Rw0G003820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 374
AclWI GGATC 2 cut(s) 335, 348
AcsI RAATTY 1 cut(s) 77
AdeI CACNNNGTG 1 cut(s) 73
AgsI TTSAA 2 cut(s) 117, 299
Alw21I GWGCWC 1 cut(s) 109
Alw26I GTCTC 1 cut(s) 297
AlwI GGATC 2 cut(s) 335, 348
ApeKI GCWGC 1 cut(s) 389
ApoI RAATTY 1 cut(s) 77
AspS9I GGNCC 1 cut(s) 62
AsuHPI GGTGA 2 cut(s) 85, 221
AvaII GGWCC 1 cut(s) 62
BaeGI GKGCMC 1 cut(s) 8
BamHI GGATCC 1 cut(s) 340
Bbv12I GWGCWC 1 cut(s) 109
BbvI GCAGC 1 cut(s) 376
BccI CCATC 2 cut(s) 172, 284
BcoDI GTCTC 1 cut(s) 297
BfaI CTAG 1 cut(s) 110
BfmI CTRYAG 1 cut(s) 82
BisI GCNGC 1 cut(s) 390
BlsI GCNGC 1 cut(s) 391
Bme18I GGWCC 1 cut(s) 62
BmgT120I GGNCC 1 cut(s) 62
BmiI GGNNCC 1 cut(s) 342
Bse3DI GCAATG 1 cut(s) 64
BseGI GGATG 1 cut(s) 306
BseMI GCAATG 1 cut(s) 64
BseSI GKGCMC 1 cut(s) 8
BseXI GCAGC 1 cut(s) 376
BsiHKAI GWGCWC 1 cut(s) 109
BsmAI GTCTC 1 cut(s) 297
Bsp1286I GDGCHC 2 cut(s) 8, 109
Bsp143I GATC 2 cut(s) 16, 340
BspACI CCGC 1 cut(s) 374
BspHI TCATGA 1 cut(s) 168
BspLI GGNNCC 1 cut(s) 342
BspPI GGATC 2 cut(s) 335, 348
BsrDI GCAATG 1 cut(s) 64
BssMI GATC 2 cut(s) 16, 340
BstAPI GCANNNNNTGC 1 cut(s) 104
BstC8I GCNNGC 1 cut(s) 96
BstF5I GGATG 1 cut(s) 306
BstKTI GATC 2 cut(s) 19, 343
BstMAI GTCTC 1 cut(s) 297
BstMBI GATC 2 cut(s) 16, 340
BstMWI GCNNNNNNNGC 2 cut(s) 54, 104
BstSFI CTRYAG 1 cut(s) 82
BstSLI GKGCMC 1 cut(s) 8
BstV1I GCAGC 1 cut(s) 376
BstX2I RGATCY 1 cut(s) 340
BstYI RGATCY 1 cut(s) 340
BtsCI GGATG 1 cut(s) 306
BtsI GCAGTG 1 cut(s) 344
BtsIMutI CAGTG 1 cut(s) 344
Cac8I GCNNGC 1 cut(s) 96
CciI TCATGA 1 cut(s) 168
Cfr13I GGNCC 1 cut(s) 62
CviAII CATG 4 cut(s) 14, 169, 280, 399
CviJI RGCY 1 cut(s) 87
CviKI_1 RGCY 1 cut(s) 87
DpnI GATC 2 cut(s) 18, 342
DpnII GATC 2 cut(s) 16, 340
DraIII CACNNNGTG 1 cut(s) 73
EciI GGCGGA 1 cut(s) 389
Eco47I GGWCC 1 cut(s) 62
FaeI CATG 4 cut(s) 17, 172, 283, 402
FalI AAGNNNNNCTT 2 cut(s) 24, 56
FatI CATG 4 cut(s) 13, 168, 279, 398
Fnu4HI GCNGC 1 cut(s) 390
FokI GGATG 1 cut(s) 293
Fsp4HI GCNGC 1 cut(s) 390
FspBI CTAG 1 cut(s) 110
GluI GCNGC 1 cut(s) 390
Hin1II CATG 4 cut(s) 17, 172, 283, 402
HphI GGTGA 2 cut(s) 85, 221
Hpy188III TCNNGA 1 cut(s) 169
Hpy99I CGWCG 1 cut(s) 323
HpyAV CCTTC 1 cut(s) 293
HpyCH4V TGCA 2 cut(s) 57, 122
HpyF10VI GCNNNNNNNGC 2 cut(s) 54, 104
Hsp92II CATG 4 cut(s) 17, 172, 283, 402
Kzo9I GATC 2 cut(s) 16, 340
Lsp1109I GCAGC 1 cut(s) 376
MaeI CTAG 1 cut(s) 110
MaeIII GTNAC 1 cut(s) 36
MalI GATC 2 cut(s) 18, 342
MboI GATC 2 cut(s) 16, 340
MboII GAAGA 1 cut(s) 164
MfeI CAATTG 1 cut(s) 117
MflI RGATCY 1 cut(s) 340
MhlI GDGCHC 2 cut(s) 8, 109
MluCI AATT 2 cut(s) 77, 117
MnlI CCTC 6 cut(s) 140, 154, 199, 295, 331, 364
MseI TTAA 1 cut(s) 366
MslI CAYNNNNRTG 1 cut(s) 278
MunI CAATTG 1 cut(s) 117
MwoI GCNNNNNNNGC 2 cut(s) 54, 104
NdeII GATC 2 cut(s) 16, 340
NlaIII CATG 4 cut(s) 17, 172, 283, 402
NlaIV GGNNCC 1 cut(s) 342
PagI TCATGA 1 cut(s) 168
PkrI GCNGC 1 cut(s) 391
PspN4I GGNNCC 1 cut(s) 342
PspPI GGNCC 1 cut(s) 62
PsuI RGATCY 1 cut(s) 340
RseI CAYNNNNRTG 1 cut(s) 278
SaqAI TTAA 1 cut(s) 366
SatI GCNGC 1 cut(s) 390
Sau3AI GATC 2 cut(s) 16, 340
Sau96I GGNCC 1 cut(s) 62
SduI GDGCHC 2 cut(s) 8, 109
SetI ASST 2 cut(s) 132, 359
SfcI CTRYAG 1 cut(s) 82
SinI GGWCC 1 cut(s) 62
SmiMI CAYNNNNRTG 1 cut(s) 278
Sse9I AATT 2 cut(s) 77, 117
SsiI CCGC 1 cut(s) 374
SspMI CTAG 1 cut(s) 110
TaqI TCGA 3 cut(s) 176, 318, 336
TasI AATT 2 cut(s) 77, 117
Tru1I TTAA 1 cut(s) 366
Tru9I TTAA 1 cut(s) 366
TscAI CASTG 1 cut(s) 351
TseI GCWGC 1 cut(s) 389
TspDTI ATGAA 1 cut(s) 230
TspRI CASTG 1 cut(s) 351
VpaK11BI GGWCC 1 cut(s) 62
XapI RAATTY 1 cut(s) 77
XspI CTAG 1 cut(s) 110
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.