Rh2CG341800

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0000385
Physical Location & Seq
Reverse (-)
45879319 .. 45879639
321 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG341800.1

Sequence Viewer

Length: 321 bp
ATGGCAGCAACAGATGACTTGGTAGACTTCAAATACGGTCCTTCTTCCACAAACTCAAAGAAGGTATCCGAAAGCAAGAAAGGCAAGGATAATCCTTCCAAGGGCGGAAGAAAGTTTGATGGAAAGAAGAAAGATGGTGGCAGTAGCAAGAGGAATTCGAGCCCGTCCCATGATAAGGACAAGAGGTCTGGTGGTTATTTTCTGTGCGGAGGTCCACATCGTGCAAAGGATTGCCCAAAGCGAGAGAAGCTGACTACCTTGGTGGCTGAGATCAATGAAGAATGCAGCAGTGAGTGTACTCCACTCTTATCACCATTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Asp_protease_2 Chromo RVT_1 Retrotrans_gag gag-asp_proteas rve

Protein Analysis

106

Amino Acids

11.44

Weight (kDa)

9.32

Isoelectric Point (pI)

62.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000385)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g23713 FvH4_1g25744 FvH4_2g00261 FvH4_2g00262 FvH4_2g15681 FvH4_2g17851 FvH4_2g35550 FvH4_3g05280 FvH4_3g10531 FvH4_3g25910 FvH4_3g28953 FvH4_3g33371 FvH4_3g33536 FvH4_3g36090 FvH4_4g03471 FvH4_4g03480 FvH4_4g06701 FvH4_4g19351 FvH4_4g34281 FvH4_5g00040 FvH4_5g03811 FvH4_5g03812 FvH4_5g11822 FvH4_5g30921 FvH4_5g31701 FvH4_6g12161 FvH4_6g15222 FvH4_6g15223 FvH4_6g17701 FvH4_6g17710 FvH4_6g19301 FvH4_6g33011 FvH4_6g34501 FvH4_6g50161 FvH4_7g04111 FvH4_7g04120 FvH4_7g04121 FvH4_7g04122 FvH4_7g04123 FvH4_7g28231 FvH4_c7g00010
malus_domestica MD12G1084200.v1.1
prunus_persica Prupe.1G206200_v2.0.a1 Prupe.8G085600_v2.0.a1
pyrus_communis pycom01g11080 pycom02g20500 pycom09g18370 pycom12555g00210 pycom13g23120 pycom14g10590 pycom16g17620 pycom16g22750
rosa_chinensis RchiOBHm_Chr2g0137481 RchiOBHm_Chr6g0251961 RchiOBHm_Chr7g0185821
rosa_laevigata RLG00000005585 RLG00000010281 RLG00000010912 RLG00000030342 RLG00000034281
rosa_multiflora Rmu_sc0000096.1_g000010 Rmu_sc0002481.1_g000045 Rmu_sc0003598.1_g000009 Rmu_sc0003863.1_g000019 Rmu_sc0003973.1_g000002 Rmu_sc0004823.1_g000050 Rmu_sc0005621.1_g000007 Rmu_sc0006537.1_g000030 Rmu_sc0006608.1_g000014 Rmu_sc0008506.1_g000007 Rmu_sc0014428.1_g000001 Rmu_sc0035437.1_g000001 Rmu_ssc0000396.1_g000022
rosa_roxburghii Rroxscaffold_175G00432300 Rroxscaffold_17G00435390 Rroxscaffold_27G00446590 Rroxscaffold_29G00441820 Rroxscaffold_31G00438110 Rroxscaffold_32G00442750 Rroxscaffold_33G00439810 Rroxscaffold_37G00445160 Rroxscaffold_4G00306500 Rroxscaffold_4G00327700 Rroxscaffold_4G00332630 Rroxscaffold_52G00439360 Rroxscaffold_63G00444420 Rroxscaffold_76G00448580 Rroxscaffold_7G00156270
rosa_rugosa Rorug03G0295200
rosa_samantha Rh1BG433700 Rh1CG115400 Rh2AG676300 Rh2CG341800 Rh2DG381400 Rh3BG370100 Rh3BG370200 Rh4AG441600 Rh4BG076500 Rh4BG107400 Rh5BG005600 Rh6BG010100 Rh7BG000200
rosa_wichuraiana Rw0G003820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 24
AciI CCGC 2 cut(s) 105, 207
AcsI RAATTY 1 cut(s) 154
AdeI CACNNNGTG 1 cut(s) 221
AfaI GTAC 1 cut(s) 298
AfiI CCNNNNNNNGG 2 cut(s) 101, 175
AgsI TTSAA 1 cut(s) 31
AhdI GACNNNNNGTC 1 cut(s) 184
AluBI AGCT 1 cut(s) 250
AluI AGCT 1 cut(s) 250
ApeKI GCWGC 2 cut(s) 5, 285
ApoI RAATTY 1 cut(s) 154
AspS9I GGNCC 2 cut(s) 38, 212
AsuHPI GGTGA 1 cut(s) 303
AvaII GGWCC 2 cut(s) 38, 212
BanII GRGCYC 1 cut(s) 164
BbvI GCAGC 2 cut(s) 17, 297
BccI CCATC 2 cut(s) 113, 128
BciVI GTATCC 1 cut(s) 76
BfuI GTATCC 1 cut(s) 76
BisI GCNGC 2 cut(s) 6, 286
BlsI GCNGC 2 cut(s) 7, 287
Bme18I GGWCC 2 cut(s) 38, 212
BmeRI GACNNNNNGTC 1 cut(s) 184
BmgT120I GGNCC 2 cut(s) 38, 212
BsaJI CCNNGG 2 cut(s) 99, 258
Bsc4I CCNNNNNNNGG 2 cut(s) 101, 175
BseDI CCNNGG 2 cut(s) 99, 258
BseLI CCNNNNNNNGG 2 cut(s) 101, 175
BseMII CTCAG 1 cut(s) 258
BseXI GCAGC 2 cut(s) 17, 297
BslFI GGGAC 1 cut(s) 151
BslI CCNNNNNNNGG 2 cut(s) 101, 175
BsmFI GGGAC 1 cut(s) 151
BsmI GAATGC 1 cut(s) 287
Bsp1286I GDGCHC 1 cut(s) 164
Bsp143I GATC 1 cut(s) 270
BspACI CCGC 2 cut(s) 105, 207
BspCNI CTCAG 1 cut(s) 259
BssECI CCNNGG 2 cut(s) 99, 258
BssMI GATC 1 cut(s) 270
BssT1I CCWWGG 2 cut(s) 99, 258
Bst4CI ACNGT 1 cut(s) 38
BstDEI CTNAG 1 cut(s) 267
BstKTI GATC 1 cut(s) 273
BstMBI GATC 1 cut(s) 270
BstMWI GCNNNNNNNGC 2 cut(s) 81, 247
BstV1I GCAGC 2 cut(s) 17, 297
BsuI GTATCC 1 cut(s) 76
BtsI GCAGTG 1 cut(s) 295
BtsIMutI CAGTG 1 cut(s) 295
Cfr13I GGNCC 2 cut(s) 38, 212
Csp6I GTAC 1 cut(s) 297
CviAII CATG 1 cut(s) 170
CviJI RGCY 3 cut(s) 162, 250, 266
CviKI_1 RGCY 3 cut(s) 162, 250, 266
CviQI GTAC 1 cut(s) 297
DdeI CTNAG 1 cut(s) 267
DpnI GATC 1 cut(s) 272
DpnII GATC 1 cut(s) 270
DraIII CACNNNGTG 1 cut(s) 221
DriI GACNNNNNGTC 1 cut(s) 184
Eam1105I GACNNNNNGTC 1 cut(s) 184
EciI GGCGGA 1 cut(s) 120
Eco130I CCWWGG 2 cut(s) 99, 258
Eco24I GRGCYC 1 cut(s) 164
Eco47I GGWCC 2 cut(s) 38, 212
EcoRI GAATTC 1 cut(s) 154
EcoT14I CCWWGG 2 cut(s) 99, 258
EcoT38I GRGCYC 1 cut(s) 164
ErhI CCWWGG 2 cut(s) 99, 258
FaeI CATG 1 cut(s) 173
FaiI YATR 1 cut(s) 171
FaqI GGGAC 1 cut(s) 151
FatI CATG 1 cut(s) 169
FblI GTMKAC 1 cut(s) 24
Fnu4HI GCNGC 2 cut(s) 6, 286
FriOI GRGCYC 1 cut(s) 164
Fsp4HI GCNGC 2 cut(s) 6, 286
GluI GCNGC 2 cut(s) 6, 286
Hin1II CATG 1 cut(s) 173
HphI GGTGA 1 cut(s) 303
Hpy166II GTNNAC 3 cut(s) 25, 215, 297
Hpy188I TCNGA 1 cut(s) 70
Hpy8I GTNNAC 3 cut(s) 25, 215, 297
HpyAV CCTTC 3 cut(s) 51, 55, 105
HpyCH4III ACNGT 1 cut(s) 38
HpyCH4V TGCA 2 cut(s) 224, 285
HpyF10VI GCNNNNNNNGC 2 cut(s) 81, 247
HpyF3I CTNAG 1 cut(s) 267
Hsp92II CATG 1 cut(s) 173
Kzo9I GATC 1 cut(s) 270
LpnPI CCDG 1 cut(s) 174
Lsp1109I GCAGC 2 cut(s) 17, 297
MalI GATC 1 cut(s) 272
MboI GATC 1 cut(s) 270
MboII GAAGA 4 cut(s) 36, 120, 139, 290
MhlI GDGCHC 1 cut(s) 164
MluCI AATT 1 cut(s) 154
MnlI CCTC 3 cut(s) 144, 177, 203
Mva1269I GAATGC 1 cut(s) 287
MwoI GCNNNNNNNGC 2 cut(s) 81, 247
NdeII GATC 1 cut(s) 270
NlaIII CATG 1 cut(s) 173
PctI GAATGC 1 cut(s) 287
PkrI GCNGC 2 cut(s) 7, 287
PspPI GGNCC 2 cut(s) 38, 212
RsaI GTAC 1 cut(s) 298
RsaNI GTAC 1 cut(s) 297
SatI GCNGC 2 cut(s) 6, 286
Sau3AI GATC 1 cut(s) 270
Sau96I GGNCC 2 cut(s) 38, 212
SduI GDGCHC 1 cut(s) 164
SetI ASST 5 cut(s) 66, 188, 214, 252, 260
SinI GGWCC 2 cut(s) 38, 212
Sse9I AATT 1 cut(s) 154
SsiI CCGC 2 cut(s) 105, 207
StyI CCWWGG 2 cut(s) 99, 258
TaaI ACNGT 1 cut(s) 38
TaqI TCGA 1 cut(s) 158
TasI AATT 1 cut(s) 154
TatI WGTACW 1 cut(s) 296
TscAI CASTG 1 cut(s) 295
TseI GCWGC 2 cut(s) 5, 285
TspDTI ATGAA 1 cut(s) 291
TspRI CASTG 1 cut(s) 295
VpaK11BI GGWCC 2 cut(s) 38, 212
XapI RAATTY 1 cut(s) 154
XmiI GTMKAC 1 cut(s) 24
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.