Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003598.1

Orthogroup ID

OG0000385

Physical Location & Seq

Genomic Coordinates Reverse (-)

19728 .. 20462

Gene Structure 735 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003598.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

atgacgggcaaaataacaaaccaacaaagattcgattggtatgaccaacagctcggagaacttgcgggggtgcccgacagattgattgatatcactaatgtgttagaccgcgtcgacttagatgggttggcggcgcggttgatagaggtggagagcctaaaggaccgagttctcggagaacttgcgggggtgcccgacagattgattgatatcactaatgtgttagaccgcgtcgacttagatgggttggcggcgcggttgatagaggaggcggaagggagagaaatgggggaaatgagtgatgcccttgatatactccaggtgacagtggacaatatggcagaagatgtccgagccaccattgatgctttcaggaatgagctagtggagatgaataccaagctcaacctgaccatcggtgtgataggaaaccaacctgtgacggactacaggagggtaaagataccagaacctcaatcttttggaggggtgctagatgccaatgagcttgagaattacttatttgatatggagcaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009628 GO:0009651 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0097159 GO:0140096 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 map04016 map04075

Pfam Domains

Protein Families

Pkinase

Protein Analysis

179

Amino Acids

20.06

Weight (kDa)

4.16

Isoelectric Point (pI)

28.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000385)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g23713 FvH4_1g25744 FvH4_2g00261 FvH4_2g00262 FvH4_2g15681 FvH4_2g17851 FvH4_2g35550 FvH4_3g05280 FvH4_3g10531 FvH4_3g25910 FvH4_3g28953 FvH4_3g33371 FvH4_3g33536 FvH4_3g36090 FvH4_4g03471 FvH4_4g03480 FvH4_4g06701 FvH4_4g19351 FvH4_4g34281 FvH4_5g00040 FvH4_5g03811 FvH4_5g03812 FvH4_5g11822 FvH4_5g30921 FvH4_5g31701 FvH4_6g12161 FvH4_6g15222 FvH4_6g15223 FvH4_6g17701 FvH4_6g17710 FvH4_6g19301 FvH4_6g33011 FvH4_6g34501 FvH4_6g50161 FvH4_7g04111 FvH4_7g04120 FvH4_7g04121 FvH4_7g04122 FvH4_7g04123 FvH4_7g28231 FvH4_c7g00010
malus_domestica	MD12G1084200.v1.1
prunus_persica	Prupe.1G206200_v2.0.a1 Prupe.8G085600_v2.0.a1
pyrus_communis	pycom01g11080 pycom02g20500 pycom09g18370 pycom12555g00210 pycom13g23120 pycom14g10590 pycom16g17620 pycom16g22750
rosa_chinensis	RchiOBHm_Chr2g0137481 RchiOBHm_Chr6g0251961 RchiOBHm_Chr7g0185821
rosa_laevigata	RLG00000005585 RLG00000010281 RLG00000010912 RLG00000030342 RLG00000034281
rosa_multiflora	Rmu_sc0000096.1_g000010 Rmu_sc0002481.1_g000045 Rmu_sc0003598.1_g000009 Rmu_sc0003863.1_g000019 Rmu_sc0003973.1_g000002 Rmu_sc0004823.1_g000050 Rmu_sc0005621.1_g000007 Rmu_sc0006537.1_g000030 Rmu_sc0006608.1_g000014 Rmu_sc0008506.1_g000007 Rmu_sc0014428.1_g000001 Rmu_sc0035437.1_g000001 Rmu_ssc0000396.1_g000022
rosa_roxburghii	Rroxscaffold_175G00432300 Rroxscaffold_17G00435390 Rroxscaffold_27G00446590 Rroxscaffold_29G00441820 Rroxscaffold_31G00438110 Rroxscaffold_32G00442750 Rroxscaffold_33G00439810 Rroxscaffold_37G00445160 Rroxscaffold_4G00306500 Rroxscaffold_4G00327700 Rroxscaffold_4G00332630 Rroxscaffold_52G00439360 Rroxscaffold_63G00444420 Rroxscaffold_76G00448580 Rroxscaffold_7G00156270
rosa_rugosa	Rorug03G0295200
rosa_samantha	Rh1BG433700 Rh1CG115400 Rh2AG676300 Rh2CG341800 Rh2DG381400 Rh3BG370100 Rh3BG370200 Rh4AG441600 Rh4BG076500 Rh4BG107400 Rh5BG005600 Rh6BG010100 Rh7BG000200
rosa_wichuraiana	Rw0G003820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	70, 190
AccI	GTMKAC	2 cut(s)	114, 234
AccII	CGCG	4 cut(s)	111, 136, 231, 256
AciI	CCGC	9 cut(s)	65, 109, 131, 136, 185, 229, 251, 256, 272
AjnI	CCWGG	1 cut(s)	318
AleI	CACNNNNGTG	2 cut(s)	98, 218
AluBI	AGCT	4 cut(s)	52, 382, 403, 508
AluI	AGCT	4 cut(s)	52, 382, 403, 508
AspLEI	GCGC	2 cut(s)	136, 256
AspS9I	GGNCC	1 cut(s)	163
AsuHPI	GGTGA	1 cut(s)	334
AvaII	GGWCC	1 cut(s)	163
BaeGI	GKGCMC	2 cut(s)	75, 195
BanI	GGYRCC	2 cut(s)	70, 190
BccI	CCATC	3 cut(s)	116, 236, 422
BciT130I	CCWGG	1 cut(s)	320
BfaI	CTAG	2 cut(s)	383, 494
BfmI	CTRYAG	1 cut(s)	448
BisI	GCNGC	2 cut(s)	132, 252
BlsI	GCNGC	2 cut(s)	133, 253
Bme1390I	CCNGG	1 cut(s)	320
Bme18I	GGWCC	1 cut(s)	163
BmgT120I	GGNCC	1 cut(s)	163
BmiI	GGNNCC	2 cut(s)	72, 192
BmrFI	CCNGG	1 cut(s)	320
BmsI	GCATC	3 cut(s)	292, 355, 487
BpmI	CTGGAG	1 cut(s)	302
BpuEI	CTTGAG	1 cut(s)	530
BsaBI	GATNNNNATC	2 cut(s)	89, 209
Bse8I	GATNNNNATC	2 cut(s)	89, 209
BseBI	CCWGG	1 cut(s)	320
BseJI	GATNNNNATC	2 cut(s)	89, 209
BseRI	GAGGAG	1 cut(s)	281
BseSI	GKGCMC	2 cut(s)	75, 195
Bsh1236I	CGCG	4 cut(s)	111, 136, 231, 256
BshNI	GGYRCC	2 cut(s)	70, 190
Bsp1286I	GDGCHC	2 cut(s)	75, 195
BspACI	CCGC	9 cut(s)	65, 109, 131, 136, 185, 229, 251, 256, 272
BspFNI	CGCG	4 cut(s)	111, 136, 231, 256
BspLI	GGNNCC	2 cut(s)	72, 192
BspT107I	GGYRCC	2 cut(s)	70, 190
Bst2UI	CCWGG	1 cut(s)	320
Bst4CI	ACNGT	1 cut(s)	328
BstDEI	CTNAG	2 cut(s)	118, 238
BstFNI	CGCG	4 cut(s)	111, 136, 231, 256
BstHHI	GCGC	2 cut(s)	136, 256
BstNI	CCWGG	1 cut(s)	320
BstSCI	CCNGG	1 cut(s)	318
BstSFI	CTRYAG	1 cut(s)	448
BstSLI	GKGCMC	2 cut(s)	75, 195
BstUI	CGCG	4 cut(s)	111, 136, 231, 256
BtsIMutI	CAGTG	1 cut(s)	333
CfoI	GCGC	2 cut(s)	136, 256
Cfr13I	GGNCC	1 cut(s)	163
CseI	GACGC	2 cut(s)	100, 220
CviJI	RGCY	6 cut(s)	52, 156, 356, 382, 403, 508
CviKI_1	RGCY	6 cut(s)	52, 156, 356, 382, 403, 508
DdeI	CTNAG	2 cut(s)	118, 238
EciI	GGCGGA	1 cut(s)	287
Eco32I	GATATC	2 cut(s)	91, 211
Eco47I	GGWCC	1 cut(s)	163
EcoRII	CCWGG	1 cut(s)	318
EcoRV	GATATC	2 cut(s)	91, 211
FaiI	YATR	4 cut(s)	42, 314, 338, 530
FauI	CCCGC	2 cut(s)	58, 178
FblI	GTMKAC	2 cut(s)	114, 234
Fnu4HI	GCNGC	2 cut(s)	132, 252
Fsp4HI	GCNGC	2 cut(s)	132, 252
FspBI	CTAG	2 cut(s)	383, 494
GlaI	GCGC	2 cut(s)	135, 255
GluI	GCNGC	2 cut(s)	132, 252
GsuI	CTGGAG	1 cut(s)	302
HgaI	GACGC	2 cut(s)	100, 220
HhaI	GCGC	2 cut(s)	136, 256
Hin6I	GCGC	2 cut(s)	134, 254
HinP1I	GCGC	2 cut(s)	134, 254
HincII	GTYRAC	2 cut(s)	115, 235
HindII	GTYRAC	2 cut(s)	115, 235
HinfI	GANTC	1 cut(s)	30
HphI	GGTGA	1 cut(s)	334
Hpy166II	GTNNAC	3 cut(s)	115, 235, 331
Hpy188I	TCNGA	3 cut(s)	56, 176, 353
Hpy188III	TCNNGA	1 cut(s)	373
Hpy8I	GTNNAC	3 cut(s)	115, 235, 331
Hpy99I	CGWCG	2 cut(s)	116, 236
HpyAV	CCTTC	1 cut(s)	269
HpyCH4III	ACNGT	1 cut(s)	328
HpyF3I	CTNAG	2 cut(s)	118, 238
HspAI	GCGC	2 cut(s)	134, 254
LmnI	GCTCC	1 cut(s)	532
LpnPI	CCDG	7 cut(s)	305, 332, 358, 422, 436, 450, 480
LweI	GCATC	3 cut(s)	292, 355, 487
MaeI	CTAG	2 cut(s)	383, 494
MaeIII	GTNAC	2 cut(s)	322, 439
MboII	GAAGA	1 cut(s)	356
MhlI	GDGCHC	2 cut(s)	75, 195
MluCI	AATT	1 cut(s)	514
MnlI	CCTC	6 cut(s)	139, 259, 262, 447, 479, 483
MslI	CAYNNNNRTG	3 cut(s)	98, 218, 419
MspR9I	CCNGG	1 cut(s)	320
MvaI	CCWGG	1 cut(s)	320
MvnI	CGCG	4 cut(s)	111, 136, 231, 256
NlaIV	GGNNCC	2 cut(s)	72, 192
NmuCI	GTSAC	2 cut(s)	322, 439
OliI	CACNNNNGTG	2 cut(s)	98, 218
PfeI	GAWTC	1 cut(s)	30
PflFI	GACNNNGTC	2 cut(s)	110, 230
PkrI	GCNGC	2 cut(s)	133, 253
Psp6I	CCWGG	1 cut(s)	318
PspGI	CCWGG	1 cut(s)	318
PspN4I	GGNNCC	2 cut(s)	72, 192
PspPI	GGNCC	1 cut(s)	163
PsyI	GACNNNGTC	2 cut(s)	110, 230
RseI	CAYNNNNRTG	3 cut(s)	98, 218, 419
SalI	GTCGAC	2 cut(s)	113, 233
SatI	GCNGC	2 cut(s)	132, 252
Sau96I	GGNCC	1 cut(s)	163
ScrFI	CCNGG	1 cut(s)	320
SduI	GDGCHC	2 cut(s)	75, 195
SetI	ASST	9 cut(s)	54, 150, 324, 384, 405, 411, 439, 475, 510
SfaNI	GCATC	3 cut(s)	292, 355, 487
SfcI	CTRYAG	1 cut(s)	448
SinI	GGWCC	1 cut(s)	163
SmiMI	CAYNNNNRTG	3 cut(s)	98, 218, 419
SmlI	CTYRAG	1 cut(s)	509
SmoI	CTYRAG	1 cut(s)	509
Sse9I	AATT	1 cut(s)	514
SsiI	CCGC	9 cut(s)	65, 109, 131, 136, 185, 229, 251, 256, 272
SspMI	CTAG	2 cut(s)	383, 494
StyD4I	CCNGG	1 cut(s)	318
TaaI	ACNGT	1 cut(s)	328
TaqI	TCGA	3 cut(s)	33, 114, 234
TaqII	GACCGA	1 cut(s)	180
TasI	AATT	1 cut(s)	514
TauI	GCSGC	2 cut(s)	134, 254
TfiI	GAWTC	1 cut(s)	30
TscAI	CASTG	1 cut(s)	333
TseFI	GTSAC	2 cut(s)	322, 439
Tsp45I	GTSAC	2 cut(s)	322, 439
TspDTI	ATGAA	1 cut(s)	407
TspGWI	ACGGA	1 cut(s)	458
TspRI	CASTG	1 cut(s)	333
Tth111I	GACNNNGTC	2 cut(s)	110, 230
VpaK11BI	GGWCC	1 cut(s)	163
XmiI	GTMKAC	2 cut(s)	114, 234
XspI	CTAG	2 cut(s)	383, 494

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.