RLG00000005585

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0000385
Physical Location & Seq
Reverse (-)
4826 .. 5565
740 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000005585

Sequence Viewer

Length: 621 bp
ATGGAAGTGCTAGAGGACGATCCAAGTGCTTTGGAAGTCTTCGTGGATGTATGCATTCACGCAGCCAGCAGCCAAGTAACCTTGCTAGCCATATTGCTTAATGCGGGGACGTTCATCGAGGATGAGGAGGAGATGCACCTCTATCCATGGAGTCATGGGCACTCTAAGGAGGAGATAGAGATCCGTGCTGTCCACATAGTGGTGAGCATAGGGGCAAGGATGTTGCTGGGGCGCCACTTCGACCTTTACACAATAATCTTCCCAAGGGAGACCACAACCTTTGGGCCCTTCAAGAGGCGCAGCAGGAGGCATGCTGACTATCTTGCTGCCTTGCAAACCTATGACTTTGAGTGGAATCTCATGTCGTGGCCAAGGCGGAGGTGGGGTAGAGAGATTAAAGTTGAGATGCTTGGATCCGGGGTGATTGGAGGTGATGAAGGTGGGGAGGTGGCAATTGAAGGCCATTCCTTGAAAAATTCGCTAGAAGAAGCGAGGCTCAACCTTAAGGAGAACAAGGTAGAGGCGTTGGTAAAGACAAAGGTAGGAGGCCTTAGTGATTCTGCAAGTGAAGCGGAGTCAGCCAACGAGGGGCAACCGGGAGGTGCCAAGAAGTCTGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

207

Amino Acids

22.92

Weight (kDa)

5.31

Isoelectric Point (pI)

62.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000385)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g23713 FvH4_1g25744 FvH4_2g00261 FvH4_2g00262 FvH4_2g15681 FvH4_2g17851 FvH4_2g35550 FvH4_3g05280 FvH4_3g10531 FvH4_3g25910 FvH4_3g28953 FvH4_3g33371 FvH4_3g33536 FvH4_3g36090 FvH4_4g03471 FvH4_4g03480 FvH4_4g06701 FvH4_4g19351 FvH4_4g34281 FvH4_5g00040 FvH4_5g03811 FvH4_5g03812 FvH4_5g11822 FvH4_5g30921 FvH4_5g31701 FvH4_6g12161 FvH4_6g15222 FvH4_6g15223 FvH4_6g17701 FvH4_6g17710 FvH4_6g19301 FvH4_6g33011 FvH4_6g34501 FvH4_6g50161 FvH4_7g04111 FvH4_7g04120 FvH4_7g04121 FvH4_7g04122 FvH4_7g04123 FvH4_7g28231 FvH4_c7g00010
malus_domestica MD12G1084200.v1.1
prunus_persica Prupe.1G206200_v2.0.a1 Prupe.8G085600_v2.0.a1
pyrus_communis pycom01g11080 pycom02g20500 pycom09g18370 pycom12555g00210 pycom13g23120 pycom14g10590 pycom16g17620 pycom16g22750
rosa_chinensis RchiOBHm_Chr2g0137481 RchiOBHm_Chr6g0251961 RchiOBHm_Chr7g0185821
rosa_laevigata RLG00000005585 RLG00000010281 RLG00000010912 RLG00000030342 RLG00000034281
rosa_multiflora Rmu_sc0000096.1_g000010 Rmu_sc0002481.1_g000045 Rmu_sc0003598.1_g000009 Rmu_sc0003863.1_g000019 Rmu_sc0003973.1_g000002 Rmu_sc0004823.1_g000050 Rmu_sc0005621.1_g000007 Rmu_sc0006537.1_g000030 Rmu_sc0006608.1_g000014 Rmu_sc0008506.1_g000007 Rmu_sc0014428.1_g000001 Rmu_sc0035437.1_g000001 Rmu_ssc0000396.1_g000022
rosa_roxburghii Rroxscaffold_175G00432300 Rroxscaffold_17G00435390 Rroxscaffold_27G00446590 Rroxscaffold_29G00441820 Rroxscaffold_31G00438110 Rroxscaffold_32G00442750 Rroxscaffold_33G00439810 Rroxscaffold_37G00445160 Rroxscaffold_4G00306500 Rroxscaffold_4G00327700 Rroxscaffold_4G00332630 Rroxscaffold_52G00439360 Rroxscaffold_63G00444420 Rroxscaffold_76G00448580 Rroxscaffold_7G00156270
rosa_rugosa Rorug03G0295200
rosa_samantha Rh1BG433700 Rh1CG115400 Rh2AG676300 Rh2CG341800 Rh2DG381400 Rh3BG370100 Rh3BG370200 Rh4AG441600 Rh4BG076500 Rh4BG107400 Rh5BG005600 Rh6BG010100 Rh7BG000200
rosa_wichuraiana Rw0G003820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 231, 602
AccB7I CCANNNNNTGG 1 cut(s) 199
AciI CCGC 3 cut(s) 104, 376, 572
AclWI GGATC 4 cut(s) 14, 175, 408, 421
AcoI YGGCCR 1 cut(s) 368
AcsI RAATTY 1 cut(s) 475
AcyI GRCGYC 1 cut(s) 232
AdeI CACNNNGTG 1 cut(s) 199
AfiI CCNNNNNNNGG 3 cut(s) 199, 294, 588
AflII CTTAAG 1 cut(s) 503
AgsI TTSAA 3 cut(s) 292, 458, 472
Alw26I GTCTC 1 cut(s) 263
AlwI GGATC 4 cut(s) 14, 175, 408, 421
AoxI GGCC 4 cut(s) 284, 368, 460, 547
ApaI GGGCCC 1 cut(s) 288
ApeKI GCWGC 4 cut(s) 62, 69, 300, 326
ApoI RAATTY 1 cut(s) 475
AspLEI GCGC 2 cut(s) 234, 300
AspS9I GGNCC 2 cut(s) 284, 285
AsuC2I CCSGG 2 cut(s) 418, 597
AsuHPI GGTGA 3 cut(s) 214, 433, 443
AsuNHI GCTAGC 1 cut(s) 85
BaeGI GKGCMC 2 cut(s) 162, 288
BalI TGGCCA 1 cut(s) 370
BamHI GGATCC 1 cut(s) 413
BanI GGYRCC 2 cut(s) 231, 602
BanII GRGCYC 1 cut(s) 288
BbsI GAAGAC 1 cut(s) 31
BbvI GCAGC 4 cut(s) 74, 81, 312, 313
BcgI CGANNNNNNTGC 2 cut(s) 8, 42
BcnI CCSGG 2 cut(s) 418, 597
BcoDI GTCTC 1 cut(s) 263
BfaI CTAG 3 cut(s) 11, 86, 482
BfoI RGCGCY 1 cut(s) 235
BfrI CTTAAG 1 cut(s) 503
BisI GCNGC 4 cut(s) 63, 70, 301, 327
BlsI GCNGC 4 cut(s) 64, 71, 302, 328
Bme1390I CCNGG 2 cut(s) 418, 597
BmgT120I GGNCC 2 cut(s) 284, 285
BmiI GGNNCC 4 cut(s) 233, 286, 415, 604
BmrFI CCNGG 2 cut(s) 418, 597
BmsI GCATC 2 cut(s) 123, 396
BmtI GCTAGC 1 cut(s) 89
BpiI GAAGAC 1 cut(s) 31
BpuMI CCSGG 2 cut(s) 418, 597
BsaBI GATNNNNATC 1 cut(s) 179
BsaHI GRCGYC 1 cut(s) 232
BsaI GGTCTC 1 cut(s) 263
BsaJI CCNNGG 4 cut(s) 146, 263, 371, 417
BsaXI ACNNNNNCTCC 2 cut(s) 370, 400
Bsc4I CCNNNNNNNGG 3 cut(s) 199, 294, 588
Bse8I GATNNNNATC 1 cut(s) 179
BseDI CCNNGG 4 cut(s) 146, 263, 371, 417
BseGI GGATG 3 cut(s) 52, 127, 225
BseJI GATNNNNATC 1 cut(s) 179
BseLI CCNNNNNNNGG 3 cut(s) 199, 294, 588
BseRI GAGGAG 3 cut(s) 140, 143, 185
BseSI GKGCMC 2 cut(s) 162, 288
BseXI GCAGC 4 cut(s) 74, 81, 312, 313
BseYI CCCAGC 1 cut(s) 226
BshFI GGCC 4 cut(s) 286, 370, 462, 549
BshNI GGYRCC 2 cut(s) 231, 602
BsiSI CCGG 2 cut(s) 417, 596
BslFI GGGAC 1 cut(s) 121
BslI CCNNNNNNNGG 3 cut(s) 199, 294, 588
BsmAI GTCTC 1 cut(s) 263
BsmFI GGGAC 1 cut(s) 121
BsmI GAATGC 1 cut(s) 54
BsnI GGCC 4 cut(s) 286, 370, 462, 549
Bso31I GGTCTC 1 cut(s) 263
Bsp120I GGGCCC 1 cut(s) 284
Bsp1286I GDGCHC 2 cut(s) 162, 288
Bsp143I GATC 3 cut(s) 19, 180, 413
Bsp19I CCATGG 1 cut(s) 146
BspACI CCGC 3 cut(s) 104, 376, 572
BspANI GGCC 4 cut(s) 286, 370, 462, 549
BspLI GGNNCC 4 cut(s) 233, 286, 415, 604
BspOI GCTAGC 1 cut(s) 89
BspPI GGATC 4 cut(s) 14, 175, 408, 421
BspT107I GGYRCC 2 cut(s) 231, 602
BspTI CTTAAG 1 cut(s) 503
BspTNI GGTCTC 1 cut(s) 263
BssECI CCNNGG 4 cut(s) 146, 263, 371, 417
BssMI GATC 3 cut(s) 19, 180, 413
BssNI GRCGYC 1 cut(s) 232
BssT1I CCWWGG 3 cut(s) 146, 263, 371
BstACI GRCGYC 1 cut(s) 232
BstAFI CTTAAG 1 cut(s) 503
BstC8I GCNNGC 3 cut(s) 67, 87, 312
BstDEI CTNAG 2 cut(s) 165, 551
BstDSI CCRYGG 1 cut(s) 146
BstENI CCTNNNNNAGG 1 cut(s) 292
BstF5I GGATG 3 cut(s) 52, 127, 225
BstH2I RGCGCY 1 cut(s) 235
BstHHI GCGC 2 cut(s) 234, 300
BstKTI GATC 3 cut(s) 22, 183, 416
BstMAI GTCTC 1 cut(s) 263
BstMBI GATC 3 cut(s) 19, 180, 413
BstMWI GCNNNNNNNGC 2 cut(s) 569, 578
BstNSI RCATGY 1 cut(s) 314
BstSCI CCNGG 2 cut(s) 416, 595
BstSLI GKGCMC 2 cut(s) 162, 288
BstV1I GCAGC 4 cut(s) 74, 81, 312, 313
BstV2I GAAGAC 1 cut(s) 31
BstX2I RGATCY 2 cut(s) 180, 413
BstYI RGATCY 2 cut(s) 180, 413
BsuRI GGCC 4 cut(s) 286, 370, 462, 549
BtgI CCRYGG 1 cut(s) 146
BtsCI GGATG 3 cut(s) 52, 127, 225
Cac8I GCNNGC 3 cut(s) 67, 87, 312
CfoI GCGC 2 cut(s) 234, 300
Cfr13I GGNCC 2 cut(s) 284, 285
CspCI CAANNNNNGTGG 2 cut(s) 262, 297
CviAII CATG 4 cut(s) 147, 155, 311, 361
CviJI RGCY 9 cut(s) 65, 72, 89, 286, 370, 462, 496, 549, 581
CviKI_1 RGCY 9 cut(s) 65, 72, 89, 286, 370, 462, 496, 549, 581
DdeI CTNAG 2 cut(s) 165, 551
DinI GGCGCC 1 cut(s) 233
DpnI GATC 3 cut(s) 21, 182, 415
DpnII GATC 3 cut(s) 19, 180, 413
DraIII CACNNNGTG 1 cut(s) 199
EaeI YGGCCR 1 cut(s) 368
EciI GGCGGA 1 cut(s) 391
Eco130I CCWWGG 3 cut(s) 146, 263, 371
Eco147I AGGCCT 1 cut(s) 549
Eco24I GRGCYC 1 cut(s) 288
Eco31I GGTCTC 1 cut(s) 263
EcoNI CCTNNNNNAGG 1 cut(s) 292
EcoO109I RGGNCCY 1 cut(s) 285
EcoT14I CCWWGG 3 cut(s) 146, 263, 371
EcoT22I ATGCAT 1 cut(s) 56
EcoT38I GRGCYC 1 cut(s) 288
EgeI GGCGCC 1 cut(s) 233
EheI GGCGCC 1 cut(s) 233
ErhI CCWWGG 3 cut(s) 146, 263, 371
FaeI CATG 4 cut(s) 150, 158, 314, 364
FaiI YATR 9 cut(s) 52, 92, 148, 156, 197, 209, 312, 342, 362
FaqI GGGAC 1 cut(s) 121
FatI CATG 4 cut(s) 146, 154, 310, 360
FauI CCCGC 1 cut(s) 97
Fnu4HI GCNGC 4 cut(s) 63, 70, 301, 327
FokI GGATG 3 cut(s) 59, 134, 232
FriOI GRGCYC 1 cut(s) 288
Fsp4HI GCNGC 4 cut(s) 63, 70, 301, 327
FspBI CTAG 3 cut(s) 11, 86, 482
GlaI GCGC 2 cut(s) 233, 299
GluI GCNGC 4 cut(s) 63, 70, 301, 327
GsaI CCCAGC 1 cut(s) 230
HaeII RGCGCY 1 cut(s) 235
HaeIII GGCC 4 cut(s) 286, 370, 462, 549
HapII CCGG 2 cut(s) 417, 596
HhaI GCGC 2 cut(s) 234, 300
Hin1I GRCGYC 1 cut(s) 232
Hin1II CATG 4 cut(s) 150, 158, 314, 364
Hin6I GCGC 2 cut(s) 232, 298
HinP1I GCGC 2 cut(s) 232, 298
HinfI GANTC 4 cut(s) 151, 355, 557, 575
HpaII CCGG 2 cut(s) 417, 596
HphI GGTGA 3 cut(s) 214, 433, 443
Hpy166II GTNNAC 1 cut(s) 193
Hpy188III TCNNGA 1 cut(s) 292
Hpy8I GTNNAC 1 cut(s) 193
HpyAV CCTTC 3 cut(s) 298, 431, 452
HpyCH4IV ACGT 1 cut(s) 110
HpyCH4V TGCA 4 cut(s) 54, 136, 334, 563
HpyF10VI GCNNNNNNNGC 2 cut(s) 569, 578
HpyF3I CTNAG 2 cut(s) 165, 551
HpySE526I ACGT 1 cut(s) 110
Hsp92I GRCGYC 1 cut(s) 232
Hsp92II CATG 4 cut(s) 150, 158, 314, 364
HspAI GCGC 2 cut(s) 232, 298
KasI GGCGCC 1 cut(s) 231
Kzo9I GATC 3 cut(s) 19, 180, 413
LpnPI CCDG 5 cut(s) 79, 212, 289, 430, 609
Lsp1109I GCAGC 4 cut(s) 74, 81, 312, 313
LweI GCATC 2 cut(s) 123, 396
MaeI CTAG 3 cut(s) 11, 86, 482
MaeII ACGT 1 cut(s) 110
MaeIII GTNAC 1 cut(s) 76
MalI GATC 3 cut(s) 21, 182, 415
MboI GATC 3 cut(s) 19, 180, 413
MboII GAAGA 3 cut(s) 31, 250, 497
MfeI CAATTG 1 cut(s) 453
MflI RGATCY 2 cut(s) 180, 413
MhlI GDGCHC 2 cut(s) 162, 288
MlsI TGGCCA 1 cut(s) 370
MluCI AATT 2 cut(s) 453, 475
MluNI TGGCCA 1 cut(s) 370
Mly113I GGCGCC 1 cut(s) 232
MlyI GAGTC 2 cut(s) 160, 584
Mox20I TGGCCA 1 cut(s) 370
Mph1103I ATGCAT 1 cut(s) 56
MscI TGGCCA 1 cut(s) 370
MseI TTAA 4 cut(s) 99, 396, 504, 619
MslI CAYNNNNRTG 1 cut(s) 200
Msp20I TGGCCA 1 cut(s) 370
MspCI CTTAAG 1 cut(s) 503
MspI CCGG 2 cut(s) 417, 596
MspR9I CCNGG 2 cut(s) 418, 597
MunI CAATTG 1 cut(s) 453
Mva1269I GAATGC 1 cut(s) 54
MwoI GCNNNNNNNGC 2 cut(s) 569, 578
NarI GGCGCC 1 cut(s) 232
NciI CCSGG 2 cut(s) 418, 597
NcoI CCATGG 1 cut(s) 146
NdeII GATC 3 cut(s) 19, 180, 413
NheI GCTAGC 1 cut(s) 85
NlaIII CATG 4 cut(s) 150, 158, 314, 364
NlaIV GGNNCC 4 cut(s) 233, 286, 415, 604
NsiI ATGCAT 1 cut(s) 56
NspI RCATGY 1 cut(s) 314
PaeI GCATGC 1 cut(s) 314
PceI AGGCCT 1 cut(s) 549
PctI GAATGC 1 cut(s) 54
PfeI GAWTC 2 cut(s) 355, 557
PflMI CCANNNNNTGG 1 cut(s) 199
PkrI GCNGC 4 cut(s) 64, 71, 302, 328
PleI GAGTC 2 cut(s) 159, 583
PluTI GGCGCC 1 cut(s) 235
PpsI GAGTC 2 cut(s) 159, 583
PspFI CCCAGC 1 cut(s) 226
PspN4I GGNNCC 4 cut(s) 233, 286, 415, 604
PspOMI GGGCCC 1 cut(s) 284
PspPI GGNCC 2 cut(s) 284, 285
PsuI RGATCY 2 cut(s) 180, 413
RseI CAYNNNNRTG 1 cut(s) 200
SaqAI TTAA 4 cut(s) 99, 396, 504, 619
SatI GCNGC 4 cut(s) 63, 70, 301, 327
Sau3AI GATC 3 cut(s) 19, 180, 413
Sau96I GGNCC 2 cut(s) 284, 285
SchI GAGTC 2 cut(s) 160, 584
ScrFI CCNGG 2 cut(s) 418, 597
SduI GDGCHC 2 cut(s) 162, 288
SfaNI GCATC 2 cut(s) 123, 396
SfoI GGCGCC 1 cut(s) 233
SmiMI CAYNNNNRTG 1 cut(s) 200
SmlI CTYRAG 1 cut(s) 503
SmoI CTYRAG 1 cut(s) 503
SphI GCATGC 1 cut(s) 314
Sse9I AATT 2 cut(s) 453, 475
SseBI AGGCCT 1 cut(s) 549
SsiI CCGC 3 cut(s) 104, 376, 572
SspDI GGCGCC 1 cut(s) 231
SspMI CTAG 3 cut(s) 11, 86, 482
StuI AGGCCT 1 cut(s) 549
StyD4I CCNGG 2 cut(s) 416, 595
StyI CCWWGG 3 cut(s) 146, 263, 371
TaiI ACGT 1 cut(s) 113
TaqI TCGA 2 cut(s) 117, 240
TasI AATT 2 cut(s) 453, 475
TfiI GAWTC 2 cut(s) 355, 557
Tru1I TTAA 4 cut(s) 99, 396, 504, 619
Tru9I TTAA 4 cut(s) 99, 396, 504, 619
TseI GCWGC 4 cut(s) 62, 69, 300, 326
TspDTI ATGAA 2 cut(s) 103, 450
TspGWI ACGGA 1 cut(s) 173
Van91I CCANNNNNTGG 1 cut(s) 199
Vha464I CTTAAG 1 cut(s) 503
XagI CCTNNNNNAGG 1 cut(s) 292
XapI RAATTY 1 cut(s) 475
XceI RCATGY 1 cut(s) 314
XcmI CCANNNNNNNNNTGG 1 cut(s) 378
XspI CTAG 3 cut(s) 11, 86, 482
Zsp2I ATGCAT 1 cut(s) 56
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.