Prupe.8G085600_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0000385
Physical Location & Seq
Reverse (-)
11862032 .. 11862790
759 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G085600.1

Sequence Viewer

Length: 654 bp
ATGGCTGGAGGTAGTGATTCCTTGAAAGAGAGTGTAGCAAGGATAGAAAATTTCTTTGGTACTATGAGTGGTGATGAGATAGAATGTGTGGTCACCCAAATTGAGGATCTTAATGCTAAAATGACAAAGATCGAGAATGTCTTTAGAGAGTTGAAAGCTTCTATGGAAAGGAAGGTCACCGATGTTTTATGTGATATGAATGGCTTAGTGGAGGCCATTGGTGGAAAGCTCAATAAGGTGGAGATTGGATTGGGCATAGTGAAGCTTTCTTTGAGTGGTAGGACTTCGAGCCAAGAGGGCTCAATGATGACAAAGATCAAAGTGCCTGAGCTAAAGGCATATGTTGGTGAGTGGAGCGCCAAAGAGCTAGAGAATTTCTTATGGGACATGGAGCCCTGGGCACAGTTGAAATTGAGGAGACATGACGTGAAAGGCCTCAATTCCTTAATTGCTACAGCCGAGAAACAAATGAACTATCGAGCAACAGTCACTTCCAGTGAGAAGAAGAAGCAAGGTGGGAAAAGGCATTCAGGTAACAATACAGTCGAGAAAAGGAAAGAGATTAGGGCTGCTTCAAACGAAGCCAAGGGTGAGGAGCACAAAGACAAGAAGAAGTTTTCTGGTTCTTTCTTTACCGAGGAGCCTACCATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotrans_gag zf-CCHC

Protein Analysis

218

Amino Acids

24.23

Weight (kDa)

8.7

Isoelectric Point (pI)

40.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000385)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g23713 FvH4_1g25744 FvH4_2g00261 FvH4_2g00262 FvH4_2g15681 FvH4_2g17851 FvH4_2g35550 FvH4_3g05280 FvH4_3g10531 FvH4_3g25910 FvH4_3g28953 FvH4_3g33371 FvH4_3g33536 FvH4_3g36090 FvH4_4g03471 FvH4_4g03480 FvH4_4g06701 FvH4_4g19351 FvH4_4g34281 FvH4_5g00040 FvH4_5g03811 FvH4_5g03812 FvH4_5g11822 FvH4_5g30921 FvH4_5g31701 FvH4_6g12161 FvH4_6g15222 FvH4_6g15223 FvH4_6g17701 FvH4_6g17710 FvH4_6g19301 FvH4_6g33011 FvH4_6g34501 FvH4_6g50161 FvH4_7g04111 FvH4_7g04120 FvH4_7g04121 FvH4_7g04122 FvH4_7g04123 FvH4_7g28231 FvH4_c7g00010
malus_domestica MD12G1084200.v1.1
prunus_persica Prupe.1G206200_v2.0.a1 Prupe.8G085600_v2.0.a1
pyrus_communis pycom01g11080 pycom02g20500 pycom09g18370 pycom12555g00210 pycom13g23120 pycom14g10590 pycom16g17620 pycom16g22750
rosa_chinensis RchiOBHm_Chr2g0137481 RchiOBHm_Chr6g0251961 RchiOBHm_Chr7g0185821
rosa_laevigata RLG00000005585 RLG00000010281 RLG00000010912 RLG00000030342 RLG00000034281
rosa_multiflora Rmu_sc0000096.1_g000010 Rmu_sc0002481.1_g000045 Rmu_sc0003598.1_g000009 Rmu_sc0003863.1_g000019 Rmu_sc0003973.1_g000002 Rmu_sc0004823.1_g000050 Rmu_sc0005621.1_g000007 Rmu_sc0006537.1_g000030 Rmu_sc0006608.1_g000014 Rmu_sc0008506.1_g000007 Rmu_sc0014428.1_g000001 Rmu_sc0035437.1_g000001 Rmu_ssc0000396.1_g000022
rosa_roxburghii Rroxscaffold_175G00432300 Rroxscaffold_17G00435390 Rroxscaffold_27G00446590 Rroxscaffold_29G00441820 Rroxscaffold_31G00438110 Rroxscaffold_32G00442750 Rroxscaffold_33G00439810 Rroxscaffold_37G00445160 Rroxscaffold_4G00306500 Rroxscaffold_4G00327700 Rroxscaffold_4G00332630 Rroxscaffold_52G00439360 Rroxscaffold_63G00444420 Rroxscaffold_76G00448580 Rroxscaffold_7G00156270
rosa_rugosa Rorug03G0295200
rosa_samantha Rh1BG433700 Rh1CG115400 Rh2AG676300 Rh2CG341800 Rh2DG381400 Rh3BG370100 Rh3BG370200 Rh4AG441600 Rh4BG076500 Rh4BG107400 Rh5BG005600 Rh6BG010100 Rh7BG000200
rosa_wichuraiana Rw0G003820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 114
AcsI RAATTY 2 cut(s) 49, 373
AfaI GTAC 1 cut(s) 61
AfiI CCNNNNNNNGG 1 cut(s) 103
AgsI TTSAA 4 cut(s) 25, 154, 409, 576
AjiI CACGTC 1 cut(s) 427
AjnI CCWGG 1 cut(s) 395
AjuI GAANNNNNNNTTGG 2 cut(s) 39, 71
AluBI AGCT 5 cut(s) 158, 229, 265, 331, 367
AluI AGCT 5 cut(s) 158, 229, 265, 331, 367
Alw21I GWGCWC 1 cut(s) 600
Alw26I GTCTC 1 cut(s) 412
AlwI GGATC 1 cut(s) 114
AoxI GGCC 2 cut(s) 213, 433
ApeKI GCWGC 1 cut(s) 569
ApoI RAATTY 2 cut(s) 49, 373
AspLEI GCGC 1 cut(s) 359
AsuHPI GGTGA 5 cut(s) 83, 85, 169, 359, 602
BaeGI GKGCMC 1 cut(s) 403
BanII GRGCYC 2 cut(s) 302, 396
Bbv12I GWGCWC 1 cut(s) 600
BbvI GCAGC 1 cut(s) 556
BciT130I CCWGG 1 cut(s) 397
BcoDI GTCTC 1 cut(s) 412
BfaI CTAG 1 cut(s) 368
BfmI CTRYAG 1 cut(s) 453
BfoI RGCGCY 1 cut(s) 360
BglI GCCNNNNNGGC 1 cut(s) 297
BisI GCNGC 1 cut(s) 570
BlsI GCNGC 1 cut(s) 571
Bme1390I CCNGG 1 cut(s) 397
BmgBI CACGTC 1 cut(s) 427
BmiI GGNNCC 2 cut(s) 393, 642
BmrFI CCNGG 1 cut(s) 397
BpmI CTGGAG 1 cut(s) 27
Bpu10I CCTNAGC 1 cut(s) 327
BsaJI CCNNGG 4 cut(s) 395, 396, 585, 636
Bsc4I CCNNNNNNNGG 1 cut(s) 103
Bse1I ACTGG 1 cut(s) 495
BseBI CCWGG 1 cut(s) 397
BseDI CCNNGG 4 cut(s) 395, 396, 585, 636
BseLI CCNNNNNNNGG 1 cut(s) 103
BseMII CTCAG 1 cut(s) 318
BseNI ACTGG 1 cut(s) 495
BseRI GAGGAG 3 cut(s) 430, 608, 653
BseSI GKGCMC 1 cut(s) 403
BseXI GCAGC 1 cut(s) 556
BshFI GGCC 2 cut(s) 215, 435
BsiHKAI GWGCWC 1 cut(s) 600
BslFI GGGAC 1 cut(s) 398
BslI CCNNNNNNNGG 1 cut(s) 103
BsmAI GTCTC 1 cut(s) 412
BsmFI GGGAC 1 cut(s) 398
BsmI GAATGC 1 cut(s) 526
BsnI GGCC 2 cut(s) 215, 435
Bsp1286I GDGCHC 4 cut(s) 302, 396, 403, 600
Bsp143I GATC 3 cut(s) 106, 129, 315
BspANI GGCC 2 cut(s) 215, 435
BspCNI CTCAG 1 cut(s) 319
BspLI GGNNCC 2 cut(s) 393, 642
BspPI GGATC 1 cut(s) 114
BsrI ACTGG 1 cut(s) 495
BssECI CCNNGG 4 cut(s) 395, 396, 585, 636
BssMI GATC 3 cut(s) 106, 129, 315
BssT1I CCWWGG 1 cut(s) 585
Bst2UI CCWGG 1 cut(s) 397
Bst4CI ACNGT 3 cut(s) 405, 487, 544
BstDEI CTNAG 2 cut(s) 205, 327
BstEII GGTNACC 2 cut(s) 91, 175
BstH2I RGCGCY 1 cut(s) 360
BstHHI GCGC 1 cut(s) 359
BstKTI GATC 3 cut(s) 109, 132, 318
BstMAI GTCTC 1 cut(s) 412
BstMBI GATC 3 cut(s) 106, 129, 315
BstMWI GCNNNNNNNGC 1 cut(s) 297
BstNI CCWGG 1 cut(s) 397
BstPI GGTNACC 2 cut(s) 91, 175
BstSCI CCNGG 1 cut(s) 395
BstSFI CTRYAG 1 cut(s) 453
BstSLI GKGCMC 1 cut(s) 403
BstV1I GCAGC 1 cut(s) 556
BstX2I RGATCY 1 cut(s) 106
BstYI RGATCY 1 cut(s) 106
BsuRI GGCC 2 cut(s) 215, 435
BtrI CACGTC 1 cut(s) 427
BtsIMutI CAGTG 1 cut(s) 502
CfoI GCGC 1 cut(s) 359
Csp6I GTAC 1 cut(s) 60
CviAII CATG 3 cut(s) 388, 422, 649
CviQI GTAC 1 cut(s) 60
DdeI CTNAG 2 cut(s) 205, 327
DpnI GATC 3 cut(s) 108, 131, 317
DpnII GATC 3 cut(s) 106, 129, 315
Eco130I CCWWGG 1 cut(s) 585
Eco147I AGGCCT 1 cut(s) 435
Eco24I GRGCYC 2 cut(s) 302, 396
Eco91I GGTNACC 2 cut(s) 91, 175
EcoO65I GGTNACC 2 cut(s) 91, 175
EcoRII CCWGG 1 cut(s) 395
EcoT14I CCWWGG 1 cut(s) 585
EcoT38I GRGCYC 2 cut(s) 302, 396
ErhI CCWWGG 1 cut(s) 585
FaeI CATG 3 cut(s) 391, 425, 652
FaqI GGGAC 1 cut(s) 398
FatI CATG 3 cut(s) 387, 421, 648
FauNDI CATATG 1 cut(s) 340
Fnu4HI GCNGC 1 cut(s) 570
FriOI GRGCYC 2 cut(s) 302, 396
Fsp4HI GCNGC 1 cut(s) 570
FspBI CTAG 1 cut(s) 368
GlaI GCGC 1 cut(s) 358
GluI GCNGC 1 cut(s) 570
GsuI CTGGAG 1 cut(s) 27
HaeII RGCGCY 1 cut(s) 360
HaeIII GGCC 2 cut(s) 215, 435
HhaI GCGC 1 cut(s) 359
Hin1II CATG 3 cut(s) 391, 425, 652
Hin6I GCGC 1 cut(s) 357
HinP1I GCGC 1 cut(s) 357
HindIII AAGCTT 2 cut(s) 156, 263
HinfI GANTC 1 cut(s) 17
HphI GGTGA 5 cut(s) 83, 85, 169, 359, 602
Hpy188III TCNNGA 2 cut(s) 133, 547
HpyAV CCTTC 1 cut(s) 166
HpyCH4III ACNGT 3 cut(s) 405, 487, 544
HpyCH4IV ACGT 1 cut(s) 426
HpyF10VI GCNNNNNNNGC 1 cut(s) 297
HpyF3I CTNAG 2 cut(s) 205, 327
HpySE526I ACGT 1 cut(s) 426
Hsp92II CATG 3 cut(s) 391, 425, 652
HspAI GCGC 1 cut(s) 357
Kzo9I GATC 3 cut(s) 106, 129, 315
LmnI GCTCC 4 cut(s) 354, 391, 595, 640
LpnPI CCDG 6 cut(s) 339, 382, 409, 508, 516, 606
Lsp1109I GCAGC 1 cut(s) 556
MaeI CTAG 1 cut(s) 368
MaeII ACGT 1 cut(s) 426
MaeIII GTNAC 4 cut(s) 91, 175, 487, 533
MalI GATC 3 cut(s) 108, 131, 317
MboI GATC 3 cut(s) 106, 129, 315
MboII GAAGA 3 cut(s) 514, 517, 622
MflI RGATCY 1 cut(s) 106
MhlI GDGCHC 4 cut(s) 302, 396, 403, 600
MluCI AATT 6 cut(s) 49, 99, 373, 410, 439, 447
MnlI CCTC 7 cut(s) 97, 205, 289, 408, 446, 586, 631
MseI TTAA 2 cut(s) 111, 446
MspR9I CCNGG 1 cut(s) 397
Mva1269I GAATGC 1 cut(s) 526
MvaI CCWGG 1 cut(s) 397
MwoI GCNNNNNNNGC 1 cut(s) 297
NdeI CATATG 1 cut(s) 340
NdeII GATC 3 cut(s) 106, 129, 315
NlaIII CATG 3 cut(s) 391, 425, 652
NlaIV GGNNCC 2 cut(s) 393, 642
NmeAIII GCCGAG 1 cut(s) 484
NmuCI GTSAC 3 cut(s) 91, 175, 487
PasI CCCWGGG 1 cut(s) 396
PceI AGGCCT 1 cut(s) 435
PctI GAATGC 1 cut(s) 526
PfeI GAWTC 1 cut(s) 17
PkrI GCNGC 1 cut(s) 571
Psp6I CCWGG 1 cut(s) 395
PspEI GGTNACC 2 cut(s) 91, 175
PspGI CCWGG 1 cut(s) 395
PspN4I GGNNCC 2 cut(s) 393, 642
PsuI RGATCY 1 cut(s) 106
RsaI GTAC 1 cut(s) 61
RsaNI GTAC 1 cut(s) 60
SaqAI TTAA 2 cut(s) 111, 446
SatI GCNGC 1 cut(s) 570
Sau3AI GATC 3 cut(s) 106, 129, 315
ScrFI CCNGG 1 cut(s) 397
SduI GDGCHC 4 cut(s) 302, 396, 403, 600
SfcI CTRYAG 1 cut(s) 453
Sse9I AATT 6 cut(s) 49, 99, 373, 410, 439, 447
SseBI AGGCCT 1 cut(s) 435
SspMI CTAG 1 cut(s) 368
StuI AGGCCT 1 cut(s) 435
StyD4I CCNGG 1 cut(s) 395
StyI CCWWGG 1 cut(s) 585
TaaI ACNGT 3 cut(s) 405, 487, 544
TaiI ACGT 1 cut(s) 429
TaqI TCGA 4 cut(s) 132, 287, 478, 546
TasI AATT 6 cut(s) 49, 99, 373, 410, 439, 447
TfiI GAWTC 1 cut(s) 17
Tru1I TTAA 2 cut(s) 111, 446
Tru9I TTAA 2 cut(s) 111, 446
TscAI CASTG 1 cut(s) 502
TseFI GTSAC 3 cut(s) 91, 175, 487
TseI GCWGC 1 cut(s) 569
Tsp45I GTSAC 3 cut(s) 91, 175, 487
TspDTI ATGAA 2 cut(s) 212, 485
TspRI CASTG 1 cut(s) 502
XapI RAATTY 2 cut(s) 49, 373
XspI CTAG 1 cut(s) 368
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.