Prupe.1G206200_v2.0.a1
ERF Family

DNA RNA polymerases superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000385
Physical Location & Seq
Reverse (-)
20900344 .. 20901008
665 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G206200.1

Sequence Viewer

Length: 483 bp
TTTGGAATGGCTAGTGGAAGTGATACGGTGAAAGACCGTGTTACCCGTCCTGAAGAGTTCGTTGGTACACCCTTGGTGAAGGATTCCGTATGTCTTGCTGCCCAATGTGCGGAGAGTGCCCAATGTCTTGCTGCCCTACGGAAGAGTCTAGAGGACTTCATGGCTGCAACAGACTCTAAATTCACCGCAACTGTGATAGACATGGAGTCCTTGGTGGATGTCTTCAAGTCTAATATCCGGGATATAGAGGAAGATGTCTCACTTTTGAAGAAGGTCTTGCATCTCAAGAATCTAGAGAACTTCCTATGGGATATGGACCAGTACTTCAAAGTTGCCTGCATATCAGAGGAAGAGAAGGTGACAGTAACTTGTATGGTGTCAGATGATGTAAGTGCTTGGCAACCGAAGATAGAGACATGGACAACCTTGAGTAAGGAATTGAGGGATCAATTCCTTCGTAACAACACAAGTTCTTTATCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Asp_protease_2 Retrotrans_gag gag-asp_proteas rve

Protein Analysis

161

Amino Acids

17.99

Weight (kDa)

4.64

Isoelectric Point (pI)

37.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000385)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g23713 FvH4_1g25744 FvH4_2g00261 FvH4_2g00262 FvH4_2g15681 FvH4_2g17851 FvH4_2g35550 FvH4_3g05280 FvH4_3g10531 FvH4_3g25910 FvH4_3g28953 FvH4_3g33371 FvH4_3g33536 FvH4_3g36090 FvH4_4g03471 FvH4_4g03480 FvH4_4g06701 FvH4_4g19351 FvH4_4g34281 FvH4_5g00040 FvH4_5g03811 FvH4_5g03812 FvH4_5g11822 FvH4_5g30921 FvH4_5g31701 FvH4_6g12161 FvH4_6g15222 FvH4_6g15223 FvH4_6g17701 FvH4_6g17710 FvH4_6g19301 FvH4_6g33011 FvH4_6g34501 FvH4_6g50161 FvH4_7g04111 FvH4_7g04120 FvH4_7g04121 FvH4_7g04122 FvH4_7g04123 FvH4_7g28231 FvH4_c7g00010
malus_domestica MD12G1084200.v1.1
prunus_persica Prupe.1G206200_v2.0.a1 Prupe.8G085600_v2.0.a1
pyrus_communis pycom01g11080 pycom02g20500 pycom09g18370 pycom12555g00210 pycom13g23120 pycom14g10590 pycom16g17620 pycom16g22750
rosa_chinensis RchiOBHm_Chr2g0137481 RchiOBHm_Chr6g0251961 RchiOBHm_Chr7g0185821
rosa_laevigata RLG00000005585 RLG00000010281 RLG00000010912 RLG00000030342 RLG00000034281
rosa_multiflora Rmu_sc0000096.1_g000010 Rmu_sc0002481.1_g000045 Rmu_sc0003598.1_g000009 Rmu_sc0003863.1_g000019 Rmu_sc0003973.1_g000002 Rmu_sc0004823.1_g000050 Rmu_sc0005621.1_g000007 Rmu_sc0006537.1_g000030 Rmu_sc0006608.1_g000014 Rmu_sc0008506.1_g000007 Rmu_sc0014428.1_g000001 Rmu_sc0035437.1_g000001 Rmu_ssc0000396.1_g000022
rosa_roxburghii Rroxscaffold_175G00432300 Rroxscaffold_17G00435390 Rroxscaffold_27G00446590 Rroxscaffold_29G00441820 Rroxscaffold_31G00438110 Rroxscaffold_32G00442750 Rroxscaffold_33G00439810 Rroxscaffold_37G00445160 Rroxscaffold_4G00306500 Rroxscaffold_4G00327700 Rroxscaffold_4G00332630 Rroxscaffold_52G00439360 Rroxscaffold_63G00444420 Rroxscaffold_76G00448580 Rroxscaffold_7G00156270
rosa_rugosa Rorug03G0295200
rosa_samantha Rh1BG433700 Rh1CG115400 Rh2AG676300 Rh2CG341800 Rh2DG381400 Rh3BG370100 Rh3BG370200 Rh4AG441600 Rh4BG076500 Rh4BG107400 Rh5BG005600 Rh6BG010100 Rh7BG000200
rosa_wichuraiana Rw0G003820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 110, 186
AclWI GGATC 1 cut(s) 453
AcsI RAATTY 1 cut(s) 179
AcuI CTGAAG 1 cut(s) 72
AfaI GTAC 2 cut(s) 67, 323
AfiI CCNNNNNNNGG 1 cut(s) 109
AgsI TTSAA 3 cut(s) 226, 268, 328
AhdI GACNNNNNGTC 1 cut(s) 205
AjuI GAANNNNNNNTTGG 2 cut(s) 45, 77
Alw26I GTCTC 2 cut(s) 262, 407
AlwI GGATC 1 cut(s) 453
ApeKI GCWGC 3 cut(s) 98, 131, 164
ApoI RAATTY 1 cut(s) 179
AspS9I GGNCC 1 cut(s) 316
AsuC2I CCSGG 1 cut(s) 239
AsuHPI GGTGA 4 cut(s) 40, 88, 175, 370
AvaII GGWCC 1 cut(s) 316
BaeGI GKGCMC 1 cut(s) 121
BbsI GAAGAC 1 cut(s) 214
BbvI GCAGC 3 cut(s) 85, 118, 151
BcnI CCSGG 1 cut(s) 239
BcoDI GTCTC 2 cut(s) 262, 407
BfaI CTAG 3 cut(s) 12, 149, 293
BisI GCNGC 3 cut(s) 99, 132, 165
BlsI GCNGC 3 cut(s) 100, 133, 166
BmcAI AGTACT 1 cut(s) 323
Bme1390I CCNGG 1 cut(s) 239
Bme18I GGWCC 1 cut(s) 316
BmeRI GACNNNNNGTC 1 cut(s) 205
BmgT120I GGNCC 1 cut(s) 316
BmrFI CCNGG 1 cut(s) 239
BmsI GCATC 1 cut(s) 289
BpiI GAAGAC 1 cut(s) 214
BpuEI CTTGAG 2 cut(s) 269, 448
BpuMI CCSGG 1 cut(s) 239
BsaJI CCNNGG 2 cut(s) 72, 210
Bsc4I CCNNNNNNNGG 1 cut(s) 109
Bse1I ACTGG 1 cut(s) 319
BseDI CCNNGG 2 cut(s) 72, 210
BseGI GGATG 1 cut(s) 223
BseLI CCNNNNNNNGG 1 cut(s) 109
BseNI ACTGG 1 cut(s) 319
BseSI GKGCMC 1 cut(s) 121
BseXI GCAGC 3 cut(s) 85, 118, 151
BsiSI CCGG 1 cut(s) 238
BslI CCNNNNNNNGG 1 cut(s) 109
BsmAI GTCTC 2 cut(s) 262, 407
Bsp1286I GDGCHC 1 cut(s) 121
Bsp143I GATC 1 cut(s) 445
BspACI CCGC 2 cut(s) 110, 186
BspPI GGATC 1 cut(s) 453
BsrI ACTGG 1 cut(s) 319
BssECI CCNNGG 2 cut(s) 72, 210
BssMI GATC 1 cut(s) 445
BssT1I CCWWGG 2 cut(s) 72, 210
Bst4CI ACNGT 4 cut(s) 28, 38, 193, 364
Bst6I CTCTTC 3 cut(s) 48, 137, 345
BstC8I GCNNGC 1 cut(s) 337
BstF5I GGATG 1 cut(s) 223
BstKTI GATC 1 cut(s) 448
BstMAI GTCTC 2 cut(s) 262, 407
BstMBI GATC 1 cut(s) 445
BstMWI GCNNNNNNNGC 2 cut(s) 107, 116
BstSCI CCNGG 1 cut(s) 237
BstSLI GKGCMC 1 cut(s) 121
BstV1I GCAGC 3 cut(s) 85, 118, 151
BstV2I GAAGAC 1 cut(s) 214
BtsCI GGATG 1 cut(s) 223
Cac8I GCNNGC 1 cut(s) 337
Cfr13I GGNCC 1 cut(s) 316
Csp6I GTAC 2 cut(s) 66, 322
CviAII CATG 3 cut(s) 160, 202, 417
CviJI RGCY 2 cut(s) 11, 164
CviKI_1 RGCY 2 cut(s) 11, 164
CviQI GTAC 2 cut(s) 66, 322
DpnI GATC 1 cut(s) 447
DpnII GATC 1 cut(s) 445
DriI GACNNNNNGTC 1 cut(s) 205
Eam1104I CTCTTC 3 cut(s) 48, 137, 345
Eam1105I GACNNNNNGTC 1 cut(s) 205
EarI CTCTTC 3 cut(s) 48, 137, 345
Eco130I CCWWGG 2 cut(s) 72, 210
Eco47I GGWCC 1 cut(s) 316
Eco57I CTGAAG 1 cut(s) 72
EcoT14I CCWWGG 2 cut(s) 72, 210
ErhI CCWWGG 2 cut(s) 72, 210
FaeI CATG 3 cut(s) 163, 205, 420
FaiI YATR 9 cut(s) 91, 161, 203, 245, 307, 314, 341, 374, 418
FalI AAGNNNNNCTT 2 cut(s) 260, 292
FatI CATG 3 cut(s) 159, 201, 416
Fnu4HI GCNGC 3 cut(s) 99, 132, 165
FokI GGATG 1 cut(s) 230
Fsp4HI GCNGC 3 cut(s) 99, 132, 165
FspBI CTAG 3 cut(s) 12, 149, 293
GluI GCNGC 3 cut(s) 99, 132, 165
HapII CCGG 1 cut(s) 238
Hin1II CATG 3 cut(s) 163, 205, 420
HinfI GANTC 5 cut(s) 83, 145, 173, 206, 289
HpaII CCGG 1 cut(s) 238
HphI GGTGA 4 cut(s) 40, 88, 175, 370
Hpy166II GTNNAC 1 cut(s) 68
Hpy188I TCNGA 2 cut(s) 346, 382
Hpy188III TCNNGA 5 cut(s) 50, 149, 286, 293, 480
Hpy8I GTNNAC 1 cut(s) 68
HpyAV CCTTC 4 cut(s) 73, 265, 349, 464
HpyCH4III ACNGT 4 cut(s) 28, 38, 193, 364
HpyCH4V TGCA 3 cut(s) 167, 280, 339
HpyF10VI GCNNNNNNNGC 2 cut(s) 107, 116
Hsp92II CATG 3 cut(s) 163, 205, 420
Kzo9I GATC 1 cut(s) 445
LpnPI CCDG 4 cut(s) 63, 251, 332, 349
Lsp1109I GCAGC 3 cut(s) 85, 118, 151
LweI GCATC 1 cut(s) 289
MaeI CTAG 3 cut(s) 12, 149, 293
MaeIII GTNAC 4 cut(s) 40, 358, 364, 458
MalI GATC 1 cut(s) 447
MboI GATC 1 cut(s) 445
MboII GAAGA 7 cut(s) 65, 154, 214, 263, 280, 362, 418
MhlI GDGCHC 1 cut(s) 121
MluCI AATT 3 cut(s) 179, 437, 449
MlyI GAGTC 3 cut(s) 154, 167, 215
MnlI CCTC 4 cut(s) 145, 241, 340, 435
MspI CCGG 1 cut(s) 238
MspR9I CCNGG 1 cut(s) 239
MwoI GCNNNNNNNGC 2 cut(s) 107, 116
NciI CCSGG 1 cut(s) 239
NdeII GATC 1 cut(s) 445
NlaIII CATG 3 cut(s) 163, 205, 420
NmuCI GTSAC 1 cut(s) 358
PfeI GAWTC 2 cut(s) 83, 289
PfoI TCCNGGA 1 cut(s) 237
PkrI GCNGC 3 cut(s) 100, 133, 166
PleI GAGTC 3 cut(s) 153, 167, 214
PpsI GAGTC 3 cut(s) 153, 167, 214
PspPI GGNCC 1 cut(s) 316
RsaI GTAC 2 cut(s) 67, 323
RsaNI GTAC 2 cut(s) 66, 322
SatI GCNGC 3 cut(s) 99, 132, 165
Sau3AI GATC 1 cut(s) 445
Sau96I GGNCC 1 cut(s) 316
ScaI AGTACT 1 cut(s) 323
SchI GAGTC 3 cut(s) 154, 167, 215
ScrFI CCNGG 1 cut(s) 239
SduI GDGCHC 1 cut(s) 121
SetI ASST 3 cut(s) 276, 360, 428
SfaNI GCATC 1 cut(s) 289
SinI GGWCC 1 cut(s) 316
SmlI CTYRAG 2 cut(s) 284, 427
SmoI CTYRAG 2 cut(s) 284, 427
Sse9I AATT 3 cut(s) 179, 437, 449
SsiI CCGC 2 cut(s) 110, 186
SspMI CTAG 3 cut(s) 12, 149, 293
StyD4I CCNGG 1 cut(s) 237
StyI CCWWGG 2 cut(s) 72, 210
TaaI ACNGT 4 cut(s) 28, 38, 193, 364
TasI AATT 3 cut(s) 179, 437, 449
TatI WGTACW 1 cut(s) 321
TfiI GAWTC 2 cut(s) 83, 289
TseFI GTSAC 1 cut(s) 358
TseI GCWGC 3 cut(s) 98, 131, 164
Tsp45I GTSAC 1 cut(s) 358
TspDTI ATGAA 1 cut(s) 148
TspGWI ACGGA 2 cut(s) 76, 154
VpaK11BI GGWCC 1 cut(s) 316
XapI RAATTY 1 cut(s) 179
XbaI TCTAGA 2 cut(s) 148, 292
XspI CTAG 3 cut(s) 12, 149, 293
ZrmI AGTACT 1 cut(s) 323
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.