FvH4_5g00040

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000385
Physical Location & Seq
Forward (+)
21119 .. 30073
8955 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g00040.t1

Sequence Viewer

Length: 2859 bp
ATGGAGGACAATTCCATGACGAAATTGATGTATGTGCCAATAAAAGTTAATGGCATAGAGGTACAAGCGATGTTGGACAGCGGAGCAACAAGTAACTTTGTTGCTATGAGCGTGGCAAAGAGACTGGGATTAGAGATGGTTCAGAACTCAAGCATGGTGAAAGTTGTGAACTCGGAGGCCAAACCAGTCCAAGGCACTACAAAGGTATGCTTGAAAGCTCAAGATTGGGAAGGCAGGTGTCGTTTGATGGTTGTACCACTTGATGACTATGAGTTGATCATCAGGATGGAGTTCTTCAGAACGGCTAAATCAAAGGCAAGAGTGAGGAAGGGGGAAACGACTTCGGATGCAACCTTGGTAGAATCCAAGCCGGAGGTGATAACTGAAGTACACAAAAATGTGGCGCTTACTCTTGAATGTATGAAAGGCCGTATAGTGGAGTTGGGAGCCAGTGCAAAGCCTTATGCACAAGCACTTCTTCGAATGGTGCCAACAAAAGTAGCGAAGCAACAGAGACACCCAGGTGTGTTGAAAGAAGCAAGTGGTTCGAAACCTTCTAAAGTTTGTTATAGTGCCGATGTGTTGTTGGATGTGAAGCAACAAGGTTTGAGTGATCATGACAAAGGGCCCGTGTCAAATATGATACTCAAGAATGTGTTCTCAAGACAAGGACACATACTCTTTGGTAGAGTCAAAGGGATTGCCAACATGAATAGTCTCAACACTTATGATCAGCAGGAATACTTGGAGGGTGTAGAGTATCCTTCATTCGCAAAGCAACGCAAAGAAAAGCGGGTGTTAGCCAAGCATGCAAGGTCAAACACTTGGCCTAGCATTGAACAAGAGCCGGAGTTCTTGATAGGAGAGGTAGATTTGTTGCAATCTTTGCCTAGAGTTGGGGAAGAGCAAAGGCATCCTCTTCGAGACCTACCAACGACGAGGACGTCGTCGAACTTTGGTGGGGGAGGTTTGTACAACTTTAATGTTCGAGGATGCTTGGGTAAGGGTGCACACTTAAGGTGCACAACACTCATGCACCCTAGGGTCAGTCAAGGGTTCATCAGGGTGCGCGGCCGGGGGCACAACAGGGTGCACGACACTCATGCACCCCAGGGTCTAGCAAAGGCAACACAATGGCACGGCGTGGGCTACATGAAGGACGATACACATGAGGGTTCAAGGGCAGGCAAGGTGCAACAAGCTAGCACCATGTGCATGCGCAACGTGAATGGGCGTCATGGCAAGTCGGGTGCGCGAGCATGCGACGATAGCTTCCTACATACATGGGATAACAAACAAGGTCAGGAGAGGAGACCACTTGACAAAGTAACAGAGCAGTTGACGTCATTCGATAGCGGTTGCTACTGTTTTGGTGAACGTAGTCGAAGCGTGAGCGGATATGACGGTTATGGCCAGACTAGAGGCGGTCAAAGTACGCTGACCAGGCATATGTACCAACAAGTCCCCCAAGTTCCTAGTCAAAAGGGACGTCTTGGCTACGGAGTTTTCATTACCACTAGCACTGGTCATAAGCGTCATATTCGCTATACGATTGTTCCTCCGGCGACACCGCTCTGCGAGAACGACAAGAACAGCGTCGCCTTTCTCTATTACAGTGACTCTTCCTCCGCCGGCCTAAACCCTCTCTTTGGTTGGGCATCCAATCCAAGTGTAGAACATGAAGCAGTTAGTCGTGCCGGTGATAGCGGTGTACCCAACGTAAGTGTTGCCGATGAAGCAGTTGATTATGCTGGTGGCAGCGGGGTGCCAGGCACAAGCGCTGCTAAAGAGTCTTCAAGTGATAGCAGATGTAGCGGTGCTTCGCTTGCTTGGAGATTGCAAGATCACACCCCTGTTGATGAACTCGCTTGCCACCTAACTAAATTGGGGATCATTAGAAACCGTCGACTATTTCACATTCCCGGGTCGGCTGCAGCGCTAGATCCTTGCTTGCAATATGTGATGGGAGAATTCACGATAGCTCTTGGCCAGATGGGTCATAATATGCTGAAGATTTTGCTTTCGATGGCCGTTATTTGGGAACGGTGCAGTTGTGGGCGGCCGACCGTAGCGGAGATTACACATTTCTACGAGTTTCGCTACTCTGATCGGCAAAGTAGGAGTGGGACCGTTGGGAATTTAGCCTTTAAGAAAAAGGAACGGGTACCAAAATACCACTTGTCATCAGTTTTTCAACAAATTGAGGGTAAGCTGTTTGACTTGACGCCCGTAGAGGAACAAAGATTGGAACGGGTAAAAGTGTTGTGGCTGCGTAAAGAGTGTTGCGATAAGCAGCTTTTGACCTCGTGGCCCTTTCTGCTTGAATTTCAACTGACCCGCCAACCAGTTTCTGAGATTTCTATTGCCAAAGCCACGAAGAAGTCCTTAGGTGAAGTTGTTCACAATTTTCTTGGTACCACTCGCCGATTTACAGACCCATACGACATGGTAAGTCAAGCTCTGGCCAGGATCCTGAACAAGAAGGACGCCACTGCAGGACCTGTGAGCCAGGAAATGCCCCTTCACACCCATCAATTTGACGCTAGCAATAAGTCCTTGGCGGATCATAACCCAGTCCTTTTATCCGACGAGGAATCCGCTTTTAATGGGGTTGACGGAGGAGAGCCGGAGGAGAATGCCCCTATTAGCATGCGAAAGGGCAAGGATCATGTTCTTGGTGAACCTGAGAAGAAGAGGAGAGCTGACATTCCTGCCCGAAATAAGCTCATGGTCGGTGCCTTCAAGGCTGGGCGAGAACATCTTACCGCCCAGGCAAAGTCCTCTGTTGCCACTTCTAGGGTCTCTGGGGCAGTTGTGGTTACTCCAACTTCCACTGCCGCTCCCTTTGTGCCAAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

953

Amino Acids

105.18

Weight (kDa)

9.3

Isoelectric Point (pI)

46.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Asp_protease_2 PF13650 12 - 86 1.6e-07 Aspartyl protease
gag-asp_proteas PF13975 12 - 100 1.2e-07 gag-polyprotein putative aspartyl protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000385)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g23713 FvH4_1g25744 FvH4_2g00261 FvH4_2g00262 FvH4_2g15681 FvH4_2g17851 FvH4_2g35550 FvH4_3g05280 FvH4_3g10531 FvH4_3g25910 FvH4_3g28953 FvH4_3g33371 FvH4_3g33536 FvH4_3g36090 FvH4_4g03471 FvH4_4g03480 FvH4_4g06701 FvH4_4g19351 FvH4_4g34281 FvH4_5g00040 FvH4_5g03811 FvH4_5g03812 FvH4_5g11822 FvH4_5g30921 FvH4_5g31701 FvH4_6g12161 FvH4_6g15222 FvH4_6g15223 FvH4_6g17701 FvH4_6g17710 FvH4_6g19301 FvH4_6g33011 FvH4_6g34501 FvH4_6g50161 FvH4_7g04111 FvH4_7g04120 FvH4_7g04121 FvH4_7g04122 FvH4_7g04123 FvH4_7g28231 FvH4_c7g00010
malus_domestica MD12G1084200.v1.1
prunus_persica Prupe.1G206200_v2.0.a1 Prupe.8G085600_v2.0.a1
pyrus_communis pycom01g11080 pycom02g20500 pycom09g18370 pycom12555g00210 pycom13g23120 pycom14g10590 pycom16g17620 pycom16g22750
rosa_chinensis RchiOBHm_Chr2g0137481 RchiOBHm_Chr6g0251961 RchiOBHm_Chr7g0185821
rosa_laevigata RLG00000005585 RLG00000010281 RLG00000010912 RLG00000030342 RLG00000034281
rosa_multiflora Rmu_sc0000096.1_g000010 Rmu_sc0002481.1_g000045 Rmu_sc0003598.1_g000009 Rmu_sc0003863.1_g000019 Rmu_sc0003973.1_g000002 Rmu_sc0004823.1_g000050 Rmu_sc0005621.1_g000007 Rmu_sc0006537.1_g000030 Rmu_sc0006608.1_g000014 Rmu_sc0008506.1_g000007 Rmu_sc0014428.1_g000001 Rmu_sc0035437.1_g000001 Rmu_ssc0000396.1_g000022
rosa_roxburghii Rroxscaffold_175G00432300 Rroxscaffold_17G00435390 Rroxscaffold_27G00446590 Rroxscaffold_29G00441820 Rroxscaffold_31G00438110 Rroxscaffold_32G00442750 Rroxscaffold_33G00439810 Rroxscaffold_37G00445160 Rroxscaffold_4G00306500 Rroxscaffold_4G00327700 Rroxscaffold_4G00332630 Rroxscaffold_52G00439360 Rroxscaffold_63G00444420 Rroxscaffold_76G00448580 Rroxscaffold_7G00156270
rosa_rugosa Rorug03G0295200
rosa_samantha Rh1BG433700 Rh1CG115400 Rh2AG676300 Rh2CG341800 Rh2DG381400 Rh3BG370100 Rh3BG370200 Rh4AG441600 Rh4BG076500 Rh4BG107400 Rh5BG005600 Rh6BG010100 Rh7BG000200
rosa_wichuraiana Rw0G003820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 225
AasI GACNNNNNNGTC 1 cut(s) 943
AatII GACGTC 3 cut(s) 947, 1346, 1492
Acc16I TGCGCA 1 cut(s) 1220
Acc36I ACCTGC 1 cut(s) 225
Acc65I GGTACC 2 cut(s) 2164, 2414
AccB1I GGYRCC 5 cut(s) 487, 1765, 2164, 2414, 2735
AccBSI CCGCTC 3 cut(s) 1395, 1573, 2840
AccI GTMKAC 1 cut(s) 1906
AccII CGCG 2 cut(s) 1071, 1255
AclWI GGATC 6 cut(s) 1898, 1937, 2464, 2477, 2571, 2673
AcoI YGGCCR 6 cut(s) 1072, 1411, 1987, 2028, 2060, 2463
AcsI RAATTY 3 cut(s) 1970, 2137, 2324
AcuI CTGAAG 3 cut(s) 280, 405, 2030
AcyI GRCGYC 6 cut(s) 944, 1234, 1343, 1489, 2225, 2487
AdeI CACNNNGTG 2 cut(s) 1144, 1212
AfaI GTAC 9 cut(s) 63, 255, 390, 974, 1435, 1454, 1713, 2166, 2416
AfeI AGCGCT 2 cut(s) 1780, 1938
AfiI CCNNNNNNNGG 6 cut(s) 191, 436, 896, 1649, 2037, 2796
AflII CTTAAG 1 cut(s) 1015
AjnI CCWGG 7 cut(s) 520, 1110, 1442, 1768, 2465, 2508, 2769
AleI CACNNNNGTG 1 cut(s) 522
AluBI AGCT 9 cut(s) 218, 1202, 1272, 1982, 2212, 2296, 2459, 2702, 2725
AluI AGCT 9 cut(s) 218, 1202, 1272, 1982, 2212, 2296, 2459, 2702, 2725
Alw21I GWGCWC 3 cut(s) 1012, 1025, 1095
Alw26I GTCTC 6 cut(s) 115, 508, 722, 918, 1306, 2806
Alw44I GTGCAC 3 cut(s) 1008, 1021, 1091
AlwI GGATC 6 cut(s) 1898, 1937, 2464, 2477, 2571, 2673
AlwNI CAGNNNCTG 2 cut(s) 2351, 2501
Ama87I CYCGRG 1 cut(s) 1922
Aor51HI AGCGCT 2 cut(s) 1780, 1938
ApaI GGGCCC 1 cut(s) 630
ApaLI GTGCAC 3 cut(s) 1008, 1021, 1091
ApeKI GCWGC 6 cut(s) 1758, 1781, 1931, 1934, 2269, 2293
ApoI RAATTY 3 cut(s) 1970, 2137, 2324
ArsI GACNNNNNNTTYG 2 cut(s) 1474, 1506
Asp700I GAANNNNTTC 2 cut(s) 656, 2397
Asp718I GGTACC 2 cut(s) 2164, 2414
AspA2I CCTAGG 1 cut(s) 1040
AspLEI GCGC 6 cut(s) 406, 1071, 1221, 1255, 1781, 1939
AspS9I GGNCC 5 cut(s) 626, 627, 2127, 2310, 2498
AsuC2I CCSGG 3 cut(s) 1076, 1923, 1924
AsuHPI GGTGA 6 cut(s) 169, 388, 1385, 1712, 2402, 2690
AsuII TTCGAA 2 cut(s) 481, 548
AsuNHI GCTAGC 2 cut(s) 1202, 2543
AvaI CYCGRG 1 cut(s) 1922
AvaII GGWCC 2 cut(s) 2127, 2498
AvrII CCTAGG 1 cut(s) 1040
AxyI CCTNAGG 1 cut(s) 2386
BaeGI GKGCMC 5 cut(s) 630, 1012, 1025, 1083, 1095
BalI TGGCCA 3 cut(s) 1413, 1989, 2465
BamHI GGATCC 1 cut(s) 2469
BanI GGYRCC 5 cut(s) 487, 1765, 2164, 2414, 2735
BanII GRGCYC 1 cut(s) 630
BarI GAAGNNNNNNTAC 2 cut(s) 1804, 1836
BauI CACGAG 1 cut(s) 2305
BbsI GAAGAC 1 cut(s) 1785
Bbv12I GWGCWC 3 cut(s) 1012, 1025, 1095
BbvI GCAGC 6 cut(s) 1768, 1770, 1918, 1946, 2256, 2305
BccI CCATC 7 cut(s) 130, 241, 280, 1957, 1987, 2020, 2538
BceAI ACGGC 4 cut(s) 318, 414, 1156, 2015
BcgI CGANNNNNNTGC 6 cut(s) 528, 562, 902, 936, 1085, 1119
BciT130I CCWGG 7 cut(s) 522, 1112, 1444, 1770, 2467, 2510, 2771
BciVI GTATCC 1 cut(s) 771
BclI TGATCA 3 cut(s) 276, 613, 730
BcnI CCSGG 3 cut(s) 1076, 1923, 1924
BcoDI GTCTC 6 cut(s) 115, 508, 722, 918, 1306, 2806
BfmI CTRYAG 2 cut(s) 1932, 2493
BfoI RGCGCY 3 cut(s) 407, 1782, 1940
BfrI CTTAAG 1 cut(s) 1015
BfuAI ACCTGC 1 cut(s) 225
BfuI GTATCC 1 cut(s) 771
BglI GCCNNNNNGGC 1 cut(s) 2744
BisI GCNGC 9 cut(s) 1072, 1759, 1782, 1932, 1935, 2060, 2270, 2294, 2838
BlnI CCTAGG 1 cut(s) 1040
BlsI GCNGC 9 cut(s) 1073, 1760, 1783, 1933, 1936, 2061, 2271, 2295, 2839
Bme18I GGWCC 2 cut(s) 2127, 2498
BmeT110I CYCGRG 1 cut(s) 1922
BmgT120I GGNCC 5 cut(s) 626, 627, 2127, 2310, 2498
BmiI GGNNCC 9 cut(s) 448, 489, 628, 1767, 2128, 2166, 2416, 2471, 2737
BmrI ACTGGG 2 cut(s) 134, 2567
BmsI GCATC 4 cut(s) 337, 922, 983, 1667
BmtI GCTAGC 2 cut(s) 1206, 2547
BmuI ACTGGG 2 cut(s) 134, 2567
BpiI GAAGAC 1 cut(s) 1785
Bpu14I TTCGAA 2 cut(s) 481, 548
BpuEI CTTGAG 4 cut(s) 133, 204, 632, 646
BpuMI CCSGG 3 cut(s) 1076, 1923, 1924
BsaHI GRCGYC 6 cut(s) 944, 1234, 1343, 1489, 2225, 2487
BsaI GGTCTC 3 cut(s) 918, 1306, 2806
BsaXI ACNNNNNCTCC 4 cut(s) 1610, 1640, 2824, 2854
Bsc4I CCNNNNNNNGG 6 cut(s) 191, 436, 896, 1649, 2037, 2796
Bse118I RCCGGY 2 cut(s) 1631, 1697
Bse1I ACTGG 6 cut(s) 129, 185, 450, 1528, 2345, 2573
Bse21I CCTNAGG 1 cut(s) 2386
BseBI CCWGG 7 cut(s) 522, 1112, 1444, 1770, 2467, 2510, 2771
BseGI GGATG 6 cut(s) 291, 352, 595, 913, 998, 1658
BseLI CCNNNNNNNGG 6 cut(s) 191, 436, 896, 1649, 2037, 2796
BseMII CTCAG 2 cut(s) 2343, 2676
BseNI ACTGG 6 cut(s) 129, 185, 450, 1528, 2345, 2573
BseRI GAGGAG 4 cut(s) 1324, 2634, 2645, 2710
BseSI GKGCMC 5 cut(s) 630, 1012, 1025, 1083, 1095
BseX3I CGGCCG 2 cut(s) 1072, 2060
BseXI GCAGC 6 cut(s) 1768, 1770, 1918, 1946, 2256, 2305
BseYI CCCAGC 1 cut(s) 2747
BsgI GTGCAG 1 cut(s) 2068
Bsh1236I CGCG 2 cut(s) 1071, 1255
Bsh1285I CGRYCG 3 cut(s) 1075, 2063, 2067
BshNI GGYRCC 5 cut(s) 487, 1765, 2164, 2414, 2735
BsiEI CGRYCG 3 cut(s) 1075, 2063, 2067
BsiHKAI GWGCWC 3 cut(s) 1012, 1025, 1095
BsiHKCI CYCGRG 1 cut(s) 1922
BsiSI CCGG 8 cut(s) 371, 848, 1075, 1562, 1632, 1698, 1923, 2627
BslFI GGGAC 3 cut(s) 1448, 1500, 2140
BslI CCNNNNNNNGG 6 cut(s) 191, 436, 896, 1649, 2037, 2796
BsmAI GTCTC 6 cut(s) 115, 508, 722, 918, 1306, 2806
BsmFI GGGAC 3 cut(s) 1448, 1500, 2140
BsmI GAATGC 1 cut(s) 2641
Bso31I GGTCTC 3 cut(s) 918, 1306, 2806
BsoBI CYCGRG 1 cut(s) 1922
Bsp119I TTCGAA 2 cut(s) 481, 548
Bsp120I GGGCCC 1 cut(s) 626
Bsp1286I GDGCHC 5 cut(s) 630, 1012, 1025, 1083, 1095
Bsp1407I TGTACA 1 cut(s) 972
BspCNI CTCAG 2 cut(s) 2344, 2677
BspFNI CGCG 2 cut(s) 1071, 1255
BspHI TCATGA 1 cut(s) 616
BspLI GGNNCC 9 cut(s) 448, 489, 628, 1767, 2128, 2166, 2416, 2471, 2737
BspMAI CTGCAG 2 cut(s) 1936, 2497
BspMI ACCTGC 1 cut(s) 225
BspOI GCTAGC 2 cut(s) 1206, 2547
BspPI GGATC 6 cut(s) 1898, 1937, 2464, 2477, 2571, 2673
BspQI GCTCTTC 1 cut(s) 897
BspT104I TTCGAA 2 cut(s) 481, 548
BspT107I GGYRCC 5 cut(s) 487, 1765, 2164, 2414, 2735
BspTI CTTAAG 1 cut(s) 1015
BspTNI GGTCTC 3 cut(s) 918, 1306, 2806
BsrBI CCGCTC 3 cut(s) 1395, 1573, 2840
BsrFI RCCGGY 2 cut(s) 1631, 1697
BsrGI TGTACA 1 cut(s) 972
BsrI ACTGG 6 cut(s) 129, 185, 450, 1528, 2345, 2573
BssAI RCCGGY 2 cut(s) 1631, 1697
BssNI GRCGYC 6 cut(s) 944, 1234, 1343, 1489, 2225, 2487
BssSI CACGAG 1 cut(s) 2305
BssT1I CCWWGG 5 cut(s) 190, 354, 1040, 2556, 2852
Bst2BI CACGAG 1 cut(s) 2305
Bst2UI CCWGG 7 cut(s) 522, 1112, 1444, 1770, 2467, 2510, 2771
Bst4CI ACNGT 7 cut(s) 1367, 1406, 1616, 1904, 2046, 2068, 2131
Bst6I CTCTTC 4 cut(s) 897, 924, 1627, 2687
BstACI GRCGYC 6 cut(s) 944, 1234, 1343, 1489, 2225, 2487
BstAFI CTTAAG 1 cut(s) 1015
BstAPI GCANNNNNTGC 2 cut(s) 886, 1212
BstAUI TGTACA 1 cut(s) 972
BstBI TTCGAA 2 cut(s) 481, 548
BstDEI CTNAG 3 cut(s) 2352, 2386, 2685
BstF5I GGATG 6 cut(s) 291, 352, 595, 913, 998, 1658
BstFNI CGCG 2 cut(s) 1071, 1255
BstH2I RGCGCY 3 cut(s) 407, 1782, 1940
BstHHI GCGC 6 cut(s) 406, 1071, 1221, 1255, 1781, 1939
BstMAI GTCTC 6 cut(s) 115, 508, 722, 918, 1306, 2806
BstMCI CGRYCG 3 cut(s) 1075, 2063, 2067
BstNI CCWGG 7 cut(s) 522, 1112, 1444, 1770, 2467, 2510, 2771
BstNSI RCATGY 4 cut(s) 812, 1219, 1263, 2653
BstSFI CTRYAG 2 cut(s) 1932, 2493
BstSLI GKGCMC 5 cut(s) 630, 1012, 1025, 1083, 1095
BstUI CGCG 2 cut(s) 1071, 1255
BstV1I GCAGC 6 cut(s) 1768, 1770, 1918, 1946, 2256, 2305
BstV2I GAAGAC 1 cut(s) 1785
BstX2I RGATCY 2 cut(s) 1942, 2469
BstYI RGATCY 2 cut(s) 1942, 2469
BstZI CGGCCG 2 cut(s) 1072, 2060
Bsu36I CCTNAGG 1 cut(s) 2386
BsuI GTATCC 1 cut(s) 771
BtgZI GCGATG 1 cut(s) 83
BtsCI GGATG 6 cut(s) 291, 352, 595, 913, 998, 1658
BtsI GCAGTG 2 cut(s) 2490, 2832
BtsIMutI CAGTG 5 cut(s) 457, 1521, 1621, 2490, 2832
BveI ACCTGC 1 cut(s) 225
CaiI CAGNNNCTG 2 cut(s) 2351, 2501
CciI TCATGA 1 cut(s) 616
CfoI GCGC 6 cut(s) 406, 1071, 1221, 1255, 1781, 1939
Cfr10I RCCGGY 2 cut(s) 1631, 1697
Cfr13I GGNCC 5 cut(s) 626, 627, 2127, 2310, 2498
Cfr9I CCCGGG 1 cut(s) 1922
CseI GACGC 6 cut(s) 1223, 1523, 1585, 2233, 2495, 2549
Csp6I GTAC 9 cut(s) 62, 254, 389, 973, 1434, 1453, 1712, 2165, 2415
CviQI GTAC 9 cut(s) 62, 254, 389, 973, 1434, 1453, 1712, 2165, 2415
DdeI CTNAG 3 cut(s) 2352, 2386, 2685
DraIII CACNNNGTG 2 cut(s) 1144, 1212
DrdI GACNNNNNNGTC 1 cut(s) 943
DseDI GACNNNNNNGTC 1 cut(s) 943
EaeI YGGCCR 6 cut(s) 1072, 1411, 1987, 2028, 2060, 2463
EagI CGGCCG 2 cut(s) 1072, 2060
Eam1104I CTCTTC 4 cut(s) 897, 924, 1627, 2687
EarI CTCTTC 4 cut(s) 897, 924, 1627, 2687
EciI GGCGGA 2 cut(s) 1618, 2576
EclXI CGGCCG 2 cut(s) 1072, 2060
Eco130I CCWWGG 5 cut(s) 190, 354, 1040, 2556, 2852
Eco24I GRGCYC 1 cut(s) 630
Eco31I GGTCTC 3 cut(s) 918, 1306, 2806
Eco47I GGWCC 2 cut(s) 2127, 2498
Eco47III AGCGCT 2 cut(s) 1780, 1938
Eco52I CGGCCG 2 cut(s) 1072, 2060
Eco57I CTGAAG 3 cut(s) 280, 405, 2030
Eco81I CCTNAGG 1 cut(s) 2386
Eco88I CYCGRG 1 cut(s) 1922
EcoO109I RGGNCCY 2 cut(s) 626, 2498
EcoRI GAATTC 1 cut(s) 1970
EcoRII CCWGG 7 cut(s) 520, 1110, 1442, 1768, 2465, 2508, 2769
EcoT14I CCWWGG 5 cut(s) 190, 354, 1040, 2556, 2852
EcoT38I GRGCYC 1 cut(s) 630
ErhI CCWWGG 5 cut(s) 190, 354, 1040, 2556, 2852
FalI AAGNNNNNCTT 6 cut(s) 194, 226, 462, 494, 2369, 2401
FaqI GGGAC 3 cut(s) 1448, 1500, 2140
FauI CCCGC 3 cut(s) 786, 1754, 2345
FauNDI CATATG 1 cut(s) 1449
FbaI TGATCA 3 cut(s) 276, 613, 730
FblI GTMKAC 1 cut(s) 1906
Fnu4HI GCNGC 9 cut(s) 1072, 1759, 1782, 1932, 1935, 2060, 2270, 2294, 2838
FokI GGATG 6 cut(s) 298, 359, 602, 900, 1005, 1645
FriOI GRGCYC 1 cut(s) 630
Fsp4HI GCNGC 9 cut(s) 1072, 1759, 1782, 1932, 1935, 2060, 2270, 2294, 2838
FspI TGCGCA 1 cut(s) 1220
GlaI GCGC 6 cut(s) 405, 1070, 1220, 1254, 1780, 1938
GluI GCNGC 9 cut(s) 1072, 1759, 1782, 1932, 1935, 2060, 2270, 2294, 2838
GsaI CCCAGC 1 cut(s) 2751
HaeII RGCGCY 3 cut(s) 407, 1782, 1940
HapII CCGG 8 cut(s) 371, 848, 1075, 1562, 1632, 1698, 1923, 2627
HgaI GACGC 6 cut(s) 1223, 1523, 1585, 2233, 2495, 2549
HhaI GCGC 6 cut(s) 406, 1071, 1221, 1255, 1781, 1939
Hin1I GRCGYC 6 cut(s) 944, 1234, 1343, 1489, 2225, 2487
Hin6I GCGC 6 cut(s) 404, 1069, 1219, 1253, 1779, 1937
HinP1I GCGC 6 cut(s) 404, 1069, 1219, 1253, 1779, 1937
HincII GTYRAC 3 cut(s) 1341, 1907, 2614
HindII GTYRAC 3 cut(s) 1341, 1907, 2614
HinfI GANTC 5 cut(s) 362, 690, 1619, 1790, 2594
HpaII CCGG 8 cut(s) 371, 848, 1075, 1562, 1632, 1698, 1923, 2627
HphI GGTGA 6 cut(s) 169, 388, 1385, 1712, 2402, 2690
Hpy188I TCNGA 7 cut(s) 144, 175, 299, 346, 2107, 2353, 2587
Hpy99I CGWCG 7 cut(s) 940, 949, 952, 1268, 1601, 1908, 2591
HpyAV CCTTC 8 cut(s) 224, 322, 564, 774, 1150, 2476, 2531, 2749
HpyCH4III ACNGT 7 cut(s) 1367, 1406, 1616, 1904, 2046, 2068, 2131
HpyCH4IV ACGT 6 cut(s) 944, 1224, 1343, 1378, 1489, 1719
HpyF3I CTNAG 3 cut(s) 2352, 2386, 2685
HpySE526I ACGT 6 cut(s) 944, 1224, 1343, 1378, 1489, 1719
Hsp92I GRCGYC 6 cut(s) 944, 1234, 1343, 1489, 2225, 2487
HspAI GCGC 6 cut(s) 404, 1069, 1219, 1253, 1779, 1937
KpnI GGTACC 2 cut(s) 2168, 2418
KroI GCCGGC 1 cut(s) 1631
KroNI GCCGGC 1 cut(s) 1633
Ksp22I TGATCA 3 cut(s) 276, 613, 730
LguI GCTCTTC 1 cut(s) 897
LmnI GCTCC 3 cut(s) 83, 446, 2845
Lsp1109I GCAGC 6 cut(s) 1768, 1770, 1918, 1946, 2256, 2305
LweI GCATC 4 cut(s) 337, 922, 983, 1667
MaeII ACGT 6 cut(s) 944, 1224, 1343, 1378, 1489, 1719
MaeIII GTNAC 4 cut(s) 92, 1327, 1616, 2818
MbiI CCGCTC 3 cut(s) 1395, 1573, 2840
MflI RGATCY 2 cut(s) 1942, 2469
MhlI GDGCHC 5 cut(s) 630, 1012, 1025, 1083, 1095
MlsI TGGCCA 3 cut(s) 1413, 1989, 2465
MluCI AATT 9 cut(s) 10, 23, 1883, 1970, 2137, 2199, 2324, 2404, 2534
MluNI TGGCCA 3 cut(s) 1413, 1989, 2465
MlyI GAGTC 3 cut(s) 699, 1613, 1799
MmeI TCCRAC 4 cut(s) 54, 567, 2610, 2849
Mox20I TGGCCA 3 cut(s) 1413, 1989, 2465
MroNI GCCGGC 1 cut(s) 1631
MroXI GAANNNNTTC 2 cut(s) 656, 2397
MscI TGGCCA 3 cut(s) 1413, 1989, 2465
MseI TTAA 5 cut(s) 48, 981, 1016, 2148, 2604
MslI CAYNNNNRTG 5 cut(s) 284, 396, 522, 1064, 1214
Msp20I TGGCCA 3 cut(s) 1413, 1989, 2465
MspA1I CMGCKG 2 cut(s) 81, 1761
MspCI CTTAAG 1 cut(s) 1015
MspI CCGG 8 cut(s) 371, 848, 1075, 1562, 1632, 1698, 1923, 2627
Mva1269I GAATGC 1 cut(s) 2641
MvaI CCWGG 7 cut(s) 522, 1112, 1444, 1770, 2467, 2510, 2771
MvnI CGCG 2 cut(s) 1071, 1255
NaeI GCCGGC 1 cut(s) 1633
NciI CCSGG 3 cut(s) 1076, 1923, 1924
NdeI CATATG 1 cut(s) 1449
NgoMIV GCCGGC 1 cut(s) 1631
NheI GCTAGC 2 cut(s) 1202, 2543
NlaIV GGNNCC 9 cut(s) 448, 489, 628, 1767, 2128, 2166, 2416, 2471, 2737
NmuCI GTSAC 1 cut(s) 1616
NsbI TGCGCA 1 cut(s) 1220
NspI RCATGY 4 cut(s) 812, 1219, 1263, 2653
NspV TTCGAA 2 cut(s) 481, 548
OliI CACNNNNGTG 1 cut(s) 522
PaeI GCATGC 4 cut(s) 812, 1219, 1263, 2653
PagI TCATGA 1 cut(s) 616
PaqCI CACCTGC 1 cut(s) 225
PasI CCCWGGG 1 cut(s) 1111
PciSI GCTCTTC 1 cut(s) 897
PcsI WCGNNNNNNNCGW 2 cut(s) 941, 944
PctI GAATGC 1 cut(s) 2641
PdiI GCCGGC 1 cut(s) 1633
PdmI GAANNNNTTC 2 cut(s) 656, 2397
PfeI GAWTC 2 cut(s) 362, 2594
PflFI GACNNNGTC 1 cut(s) 946
PkrI GCNGC 9 cut(s) 1073, 1760, 1783, 1933, 1936, 2061, 2271, 2295, 2839
PleI GAGTC 3 cut(s) 698, 1613, 1798
PpsI GAGTC 3 cut(s) 698, 1613, 1798
PpuMI RGGWCCY 1 cut(s) 2498
Psp5II RGGWCCY 1 cut(s) 2498
Psp6I CCWGG 7 cut(s) 520, 1110, 1442, 1768, 2465, 2508, 2769
PspFI CCCAGC 1 cut(s) 2747
PspGI CCWGG 7 cut(s) 520, 1110, 1442, 1768, 2465, 2508, 2769
PspN4I GGNNCC 9 cut(s) 448, 489, 628, 1767, 2128, 2166, 2416, 2471, 2737
PspOMI GGGCCC 1 cut(s) 626
PspPI GGNCC 5 cut(s) 626, 627, 2127, 2310, 2498
PspPPI RGGWCCY 1 cut(s) 2498
PstI CTGCAG 2 cut(s) 1936, 2497
PstNI CAGNNNCTG 2 cut(s) 2351, 2501
PsuI RGATCY 2 cut(s) 1942, 2469
PsyI GACNNNGTC 1 cut(s) 946
RsaI GTAC 9 cut(s) 63, 255, 390, 974, 1435, 1454, 1713, 2166, 2416
RsaNI GTAC 9 cut(s) 62, 254, 389, 973, 1434, 1453, 1712, 2165, 2415
RseI CAYNNNNRTG 5 cut(s) 284, 396, 522, 1064, 1214
SalI GTCGAC 1 cut(s) 1905
SapI GCTCTTC 1 cut(s) 897
SaqAI TTAA 5 cut(s) 48, 981, 1016, 2148, 2604
SatI GCNGC 9 cut(s) 1072, 1759, 1782, 1932, 1935, 2060, 2270, 2294, 2838
Sau96I GGNCC 5 cut(s) 626, 627, 2127, 2310, 2498
SchI GAGTC 3 cut(s) 699, 1613, 1799
SduI GDGCHC 5 cut(s) 630, 1012, 1025, 1083, 1095
SfaNI GCATC 4 cut(s) 337, 922, 983, 1667
SfcI CTRYAG 2 cut(s) 1932, 2493
SfuI TTCGAA 2 cut(s) 481, 548
SinI GGWCC 2 cut(s) 2127, 2498
SmaI CCCGGG 1 cut(s) 1924
SmiMI CAYNNNNRTG 5 cut(s) 284, 396, 522, 1064, 1214
SmlI CTYRAG 5 cut(s) 148, 219, 647, 661, 1015
SmoI CTYRAG 5 cut(s) 148, 219, 647, 661, 1015
SphI GCATGC 4 cut(s) 812, 1219, 1263, 2653
Sse9I AATT 9 cut(s) 10, 23, 1883, 1970, 2137, 2199, 2324, 2404, 2534
StyI CCWWGG 5 cut(s) 190, 354, 1040, 2556, 2852
TaaI ACNGT 7 cut(s) 1367, 1406, 1616, 1904, 2046, 2068, 2131
TaiI ACGT 6 cut(s) 947, 1227, 1346, 1381, 1492, 1722
TaqI TCGA 9 cut(s) 481, 548, 922, 950, 988, 1350, 1384, 1906, 2024
TasI AATT 9 cut(s) 10, 23, 1883, 1970, 2137, 2199, 2324, 2404, 2534
TatI WGTACW 2 cut(s) 388, 972
TauI GCSGC 3 cut(s) 1074, 2062, 2840
TfiI GAWTC 2 cut(s) 362, 2594
Tru1I TTAA 5 cut(s) 48, 981, 1016, 2148, 2604
Tru9I TTAA 5 cut(s) 48, 981, 1016, 2148, 2604
TscAI CASTG 5 cut(s) 457, 1528, 1621, 2497, 2839
TseFI GTSAC 1 cut(s) 1616
TseI GCWGC 6 cut(s) 1758, 1781, 1931, 1934, 2269, 2293
Tsp45I GTSAC 1 cut(s) 1616
TspDTI ATGAA 9 cut(s) 437, 725, 756, 1048, 1169, 1498, 1695, 1749, 1875
TspGWI ACGGA 2 cut(s) 1515, 2631
TspMI CCCGGG 1 cut(s) 1922
TspRI CASTG 5 cut(s) 457, 1528, 1621, 2497, 2839
Tth111I GACNNNGTC 1 cut(s) 946
Vha464I CTTAAG 1 cut(s) 1015
VneI GTGCAC 3 cut(s) 1008, 1021, 1091
VpaK11BI GGWCC 2 cut(s) 2127, 2498
XapI RAATTY 3 cut(s) 1970, 2137, 2324
XceI RCATGY 4 cut(s) 812, 1219, 1263, 2653
XmaI CCCGGG 1 cut(s) 1922
XmaJI CCTAGG 1 cut(s) 1040
XmiI GTMKAC 1 cut(s) 1906
XmnI GAANNNNTTC 2 cut(s) 656, 2397
ZraI GACGTC 3 cut(s) 945, 1344, 1490
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.