Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003863.1

Orthogroup ID

OG0000385

Physical Location & Seq

Genomic Coordinates Forward (+)

92162 .. 92374

Gene Structure 213 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003863.1_g000019.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 213 bp

atggcagaagatgtccaagccaccattgatgctttcaagaacgagctggtggagatgaataccaagctcaacttgaccatccgtgcgatgggaaaccaacctgtgacggactataggaaggtgaagatacaggaacctcaagactataaaggggcgcaagacgccaaagagcttgagaatttcctatttgaatggagaaatatttctgagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009628 GO:0009651 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0097159 GO:0140096 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 map04016 map04075

Pfam Domains

Protein Families

Pkinase

Protein Analysis

70

Amino Acids

8.18

Weight (kDa)

4.75

Isoelectric Point (pI)

24.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000385)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g23713 FvH4_1g25744 FvH4_2g00261 FvH4_2g00262 FvH4_2g15681 FvH4_2g17851 FvH4_2g35550 FvH4_3g05280 FvH4_3g10531 FvH4_3g25910 FvH4_3g28953 FvH4_3g33371 FvH4_3g33536 FvH4_3g36090 FvH4_4g03471 FvH4_4g03480 FvH4_4g06701 FvH4_4g19351 FvH4_4g34281 FvH4_5g00040 FvH4_5g03811 FvH4_5g03812 FvH4_5g11822 FvH4_5g30921 FvH4_5g31701 FvH4_6g12161 FvH4_6g15222 FvH4_6g15223 FvH4_6g17701 FvH4_6g17710 FvH4_6g19301 FvH4_6g33011 FvH4_6g34501 FvH4_6g50161 FvH4_7g04111 FvH4_7g04120 FvH4_7g04121 FvH4_7g04122 FvH4_7g04123 FvH4_7g28231 FvH4_c7g00010
malus_domestica	MD12G1084200.v1.1
prunus_persica	Prupe.1G206200_v2.0.a1 Prupe.8G085600_v2.0.a1
pyrus_communis	pycom01g11080 pycom02g20500 pycom09g18370 pycom12555g00210 pycom13g23120 pycom14g10590 pycom16g17620 pycom16g22750
rosa_chinensis	RchiOBHm_Chr2g0137481 RchiOBHm_Chr6g0251961 RchiOBHm_Chr7g0185821
rosa_laevigata	RLG00000005585 RLG00000010281 RLG00000010912 RLG00000030342 RLG00000034281
rosa_multiflora	Rmu_sc0000096.1_g000010 Rmu_sc0002481.1_g000045 Rmu_sc0003598.1_g000009 Rmu_sc0003863.1_g000019 Rmu_sc0003973.1_g000002 Rmu_sc0004823.1_g000050 Rmu_sc0005621.1_g000007 Rmu_sc0006537.1_g000030 Rmu_sc0006608.1_g000014 Rmu_sc0008506.1_g000007 Rmu_sc0014428.1_g000001 Rmu_sc0035437.1_g000001 Rmu_ssc0000396.1_g000022
rosa_roxburghii	Rroxscaffold_175G00432300 Rroxscaffold_17G00435390 Rroxscaffold_27G00446590 Rroxscaffold_29G00441820 Rroxscaffold_31G00438110 Rroxscaffold_32G00442750 Rroxscaffold_33G00439810 Rroxscaffold_37G00445160 Rroxscaffold_4G00306500 Rroxscaffold_4G00327700 Rroxscaffold_4G00332630 Rroxscaffold_52G00439360 Rroxscaffold_63G00444420 Rroxscaffold_76G00448580 Rroxscaffold_7G00156270
rosa_rugosa	Rorug03G0295200
rosa_samantha	Rh1BG433700 Rh1CG115400 Rh2AG676300 Rh2CG341800 Rh2DG381400 Rh3BG370100 Rh3BG370200 Rh4AG441600 Rh4BG076500 Rh4BG107400 Rh5BG005600 Rh6BG010100 Rh7BG000200
rosa_wichuraiana	Rw0G003820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	178
AcyI	GRCGYC	1 cut(s)	162
AfiI	CCNNNNNNNGG	1 cut(s)	88
AgsI	TTSAA	2 cut(s)	37, 191
AluBI	AGCT	3 cut(s)	46, 67, 172
AluI	AGCT	3 cut(s)	46, 67, 172
ApoI	RAATTY	1 cut(s)	178
Asp700I	GAANNNNTTC	1 cut(s)	202
AspLEI	GCGC	1 cut(s)	157
AsuHPI	GGTGA	1 cut(s)	133
BccI	CCATC	2 cut(s)	82, 86
BfmI	CTRYAG	1 cut(s)	112
BmiI	GGNNCC	1 cut(s)	135
BmsI	GCATC	1 cut(s)	19
BpuEI	CTTGAG	2 cut(s)	123, 194
BsaHI	GRCGYC	1 cut(s)	162
Bsc4I	CCNNNNNNNGG	1 cut(s)	88
BseGI	GGATG	1 cut(s)	78
BseLI	CCNNNNNNNGG	1 cut(s)	88
BseMII	CTCAG	1 cut(s)	198
BslI	CCNNNNNNNGG	1 cut(s)	88
BspCNI	CTCAG	1 cut(s)	199
BspLI	GGNNCC	1 cut(s)	135
BssNI	GRCGYC	1 cut(s)	162
BstACI	GRCGYC	1 cut(s)	162
BstDEI	CTNAG	1 cut(s)	207
BstF5I	GGATG	1 cut(s)	78
BstHHI	GCGC	1 cut(s)	157
BstMWI	GCNNNNNNNGC	1 cut(s)	161
BstSFI	CTRYAG	1 cut(s)	112
BtgZI	GCGATG	1 cut(s)	101
BtsCI	GGATG	1 cut(s)	78
CfoI	GCGC	1 cut(s)	157
CseI	GACGC	1 cut(s)	170
CviJI	RGCY	4 cut(s)	20, 46, 67, 172
CviKI_1	RGCY	4 cut(s)	20, 46, 67, 172
DdeI	CTNAG	1 cut(s)	207
FaiI	YATR	2 cut(s)	114, 147
FalI	AAGNNNNNCTT	2 cut(s)	56, 88
FokI	GGATG	1 cut(s)	65
GlaI	GCGC	1 cut(s)	156
HgaI	GACGC	1 cut(s)	170
HhaI	GCGC	1 cut(s)	157
Hin1I	GRCGYC	1 cut(s)	162
Hin6I	GCGC	1 cut(s)	155
HinP1I	GCGC	1 cut(s)	155
HphI	GGTGA	1 cut(s)	133
Hpy188I	TCNGA	1 cut(s)	208
Hpy188III	TCNNGA	2 cut(s)	37, 140
HpyAV	CCTTC	1 cut(s)	112
HpyF10VI	GCNNNNNNNGC	1 cut(s)	161
HpyF3I	CTNAG	1 cut(s)	207
Hsp92I	GRCGYC	1 cut(s)	162
HspAI	GCGC	1 cut(s)	155
LpnPI	CCDG	3 cut(s)	32, 114, 116
LweI	GCATC	1 cut(s)	19
MaeIII	GTNAC	1 cut(s)	103
MboII	GAAGA	2 cut(s)	20, 136
MluCI	AATT	1 cut(s)	178
MnlI	CCTC	1 cut(s)	147
MroXI	GAANNNNTTC	1 cut(s)	202
MwoI	GCNNNNNNNGC	1 cut(s)	161
NlaIV	GGNNCC	1 cut(s)	135
NmuCI	GTSAC	1 cut(s)	103
PdmI	GAANNNNTTC	1 cut(s)	202
PspN4I	GGNNCC	1 cut(s)	135
SetI	ASST	6 cut(s)	48, 69, 103, 123, 139, 174
SfaNI	GCATC	1 cut(s)	19
SfcI	CTRYAG	1 cut(s)	112
SmlI	CTYRAG	2 cut(s)	138, 173
SmoI	CTYRAG	2 cut(s)	138, 173
Sse9I	AATT	1 cut(s)	178
SspI	AATATT	1 cut(s)	202
TasI	AATT	1 cut(s)	178
TseFI	GTSAC	1 cut(s)	103
Tsp45I	GTSAC	1 cut(s)	103
TspDTI	ATGAA	1 cut(s)	71
TspGWI	ACGGA	2 cut(s)	71, 122
XapI	RAATTY	1 cut(s)	178
XcmI	CCANNNNNNNNNTGG	1 cut(s)	85
XmnI	GAANNNNTTC	1 cut(s)	202

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.