Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005621.1

Orthogroup ID

OG0000385

Physical Location & Seq

Genomic Coordinates Forward (+)

41880 .. 42945

Gene Structure 1066 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005621.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

atgggatctccactcggatacgttacttcccgtctcatagtgttaggggccgcacttgtaatgccacaagcaaccttgtccaaggtcattagtcaagcctttggttggtttgcttgtgtgctagggatgttttgggtgcccgacaggttgattgatgtcactaatgtgttggaccgcgtcgacctagatgggttggcggcacggatgatagaggtggagagcataaaggaccgagttgtggcccttgaaaaatgtaaagctcgaggaggcggaagggagagagatgaggaagaaactcccgttccgaacgagcaaatgggggcaatgagtgatgcccttgacacactccaggtgatggtggacaatatggcagaagatatccgagccaccattgatgcattcaggaacgagctggtggagatgagtaccaagctcaacctgaccatccgtgctataggaaaccaacctgtgacggactacaggaaggtaaagataccagaacctcaagcatttggaggggcgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009628 GO:0009651 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0097159 GO:0140096 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 map04016 map04075

Pfam Domains

Protein Families

Pkinase

Protein Analysis

174

Amino Acids

19.08

Weight (kDa)

4.77

Isoelectric Point (pI)

34.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000385)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g23713 FvH4_1g25744 FvH4_2g00261 FvH4_2g00262 FvH4_2g15681 FvH4_2g17851 FvH4_2g35550 FvH4_3g05280 FvH4_3g10531 FvH4_3g25910 FvH4_3g28953 FvH4_3g33371 FvH4_3g33536 FvH4_3g36090 FvH4_4g03471 FvH4_4g03480 FvH4_4g06701 FvH4_4g19351 FvH4_4g34281 FvH4_5g00040 FvH4_5g03811 FvH4_5g03812 FvH4_5g11822 FvH4_5g30921 FvH4_5g31701 FvH4_6g12161 FvH4_6g15222 FvH4_6g15223 FvH4_6g17701 FvH4_6g17710 FvH4_6g19301 FvH4_6g33011 FvH4_6g34501 FvH4_6g50161 FvH4_7g04111 FvH4_7g04120 FvH4_7g04121 FvH4_7g04122 FvH4_7g04123 FvH4_7g28231 FvH4_c7g00010
malus_domestica	MD12G1084200.v1.1
prunus_persica	Prupe.1G206200_v2.0.a1 Prupe.8G085600_v2.0.a1
pyrus_communis	pycom01g11080 pycom02g20500 pycom09g18370 pycom12555g00210 pycom13g23120 pycom14g10590 pycom16g17620 pycom16g22750
rosa_chinensis	RchiOBHm_Chr2g0137481 RchiOBHm_Chr6g0251961 RchiOBHm_Chr7g0185821
rosa_laevigata	RLG00000005585 RLG00000010281 RLG00000010912 RLG00000030342 RLG00000034281
rosa_multiflora	Rmu_sc0000096.1_g000010 Rmu_sc0002481.1_g000045 Rmu_sc0003598.1_g000009 Rmu_sc0003863.1_g000019 Rmu_sc0003973.1_g000002 Rmu_sc0004823.1_g000050 Rmu_sc0005621.1_g000007 Rmu_sc0006537.1_g000030 Rmu_sc0006608.1_g000014 Rmu_sc0008506.1_g000007 Rmu_sc0014428.1_g000001 Rmu_sc0035437.1_g000001 Rmu_ssc0000396.1_g000022
rosa_roxburghii	Rroxscaffold_175G00432300 Rroxscaffold_17G00435390 Rroxscaffold_27G00446590 Rroxscaffold_29G00441820 Rroxscaffold_31G00438110 Rroxscaffold_32G00442750 Rroxscaffold_33G00439810 Rroxscaffold_37G00445160 Rroxscaffold_4G00306500 Rroxscaffold_4G00327700 Rroxscaffold_4G00332630 Rroxscaffold_52G00439360 Rroxscaffold_63G00444420 Rroxscaffold_76G00448580 Rroxscaffold_7G00156270
rosa_rugosa	Rorug03G0295200
rosa_samantha	Rh1BG433700 Rh1CG115400 Rh2AG676300 Rh2CG341800 Rh2DG381400 Rh3BG370100 Rh3BG370200 Rh4AG441600 Rh4BG076500 Rh4BG107400 Rh5BG005600 Rh6BG010100 Rh7BG000200
rosa_wichuraiana	Rw0G003820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	136
AccB7I	CCANNNNNTGG	1 cut(s)	355
AccI	GTMKAC	1 cut(s)	180
AccII	CGCG	1 cut(s)	177
AciI	CCGC	4 cut(s)	51, 175, 197, 270
AclWI	GGATC	1 cut(s)	13
AfaI	GTAC	1 cut(s)	427
AfiI	CCNNNNNNNGG	3 cut(s)	105, 238, 355
AgsI	TTSAA	1 cut(s)	248
AjnI	CCWGG	1 cut(s)	348
AleI	CACNNNNGTG	1 cut(s)	164
AluBI	AGCT	3 cut(s)	260, 412, 433
AluI	AGCT	3 cut(s)	260, 412, 433
Alw26I	GTCTC	1 cut(s)	38
AlwI	GGATC	1 cut(s)	13
Ama87I	CYCGRG	1 cut(s)	261
AoxI	GGCC	2 cut(s)	48, 240
AspS9I	GGNCC	4 cut(s)	48, 172, 229, 241
AsuHPI	GGTGA	1 cut(s)	364
AvaI	CYCGRG	1 cut(s)	261
AvaII	GGWCC	2 cut(s)	172, 229
BaeGI	GKGCMC	1 cut(s)	141
BanI	GGYRCC	1 cut(s)	136
BccI	CCATC	3 cut(s)	182, 349, 452
BciT130I	CCWGG	1 cut(s)	350
BciVI	GTATCC	1 cut(s)	11
BcoDI	GTCTC	1 cut(s)	38
BfaI	CTAG	2 cut(s)	122, 185
BfmI	CTRYAG	2 cut(s)	453, 478
BfuI	GTATCC	1 cut(s)	11
BisI	GCNGC	2 cut(s)	51, 198
BlsI	GCNGC	2 cut(s)	52, 199
Bme1390I	CCNGG	1 cut(s)	350
Bme18I	GGWCC	2 cut(s)	172, 229
BmeT110I	CYCGRG	1 cut(s)	261
BmgT120I	GGNCC	4 cut(s)	48, 172, 229, 241
BmiI	GGNNCC	2 cut(s)	49, 138
BmrFI	CCNGG	1 cut(s)	350
BmsI	GCATC	2 cut(s)	322, 385
BpmI	CTGGAG	1 cut(s)	332
BpuEI	CTTGAG	1 cut(s)	489
BsaJI	CCNNGG	1 cut(s)	81
Bsc4I	CCNNNNNNNGG	3 cut(s)	105, 238, 355
Bse3DI	GCAATG	1 cut(s)	330
BseBI	CCWGG	1 cut(s)	350
BseDI	CCNNGG	1 cut(s)	81
BseGI	GGATG	3 cut(s)	132, 210, 444
BseLI	CCNNNNNNNGG	3 cut(s)	105, 238, 355
BseMI	GCAATG	1 cut(s)	330
BseRI	GAGGAG	1 cut(s)	279
BseSI	GKGCMC	1 cut(s)	141
Bsh1236I	CGCG	1 cut(s)	177
BshFI	GGCC	2 cut(s)	50, 242
BshNI	GGYRCC	1 cut(s)	136
BsiHKCI	CYCGRG	1 cut(s)	261
BslI	CCNNNNNNNGG	3 cut(s)	105, 238, 355
BsmAI	GTCTC	1 cut(s)	38
BsmBI	CGTCTC	1 cut(s)	38
BsmI	GAATGC	1 cut(s)	398
BsnI	GGCC	2 cut(s)	50, 242
BsoBI	CYCGRG	1 cut(s)	261
Bsp1286I	GDGCHC	1 cut(s)	141
Bsp143I	GATC	1 cut(s)	5
BspACI	CCGC	4 cut(s)	51, 175, 197, 270
BspANI	GGCC	2 cut(s)	50, 242
BspFNI	CGCG	1 cut(s)	177
BspLI	GGNNCC	2 cut(s)	49, 138
BspPI	GGATC	1 cut(s)	13
BspT107I	GGYRCC	1 cut(s)	136
BsrDI	GCAATG	1 cut(s)	330
BssECI	CCNNGG	1 cut(s)	81
BssMI	GATC	1 cut(s)	5
BssT1I	CCWWGG	1 cut(s)	81
Bst2UI	CCWGG	1 cut(s)	350
BstF5I	GGATG	3 cut(s)	132, 210, 444
BstFNI	CGCG	1 cut(s)	177
BstKTI	GATC	1 cut(s)	8
BstMAI	GTCTC	1 cut(s)	38
BstMBI	GATC	1 cut(s)	5
BstNI	CCWGG	1 cut(s)	350
BstSCI	CCNGG	1 cut(s)	348
BstSFI	CTRYAG	2 cut(s)	453, 478
BstSLI	GKGCMC	1 cut(s)	141
BstUI	CGCG	1 cut(s)	177
BstX2I	RGATCY	1 cut(s)	5
BstYI	RGATCY	1 cut(s)	5
BsuI	GTATCC	1 cut(s)	11
BsuRI	GGCC	2 cut(s)	50, 242
BtsCI	GGATG	3 cut(s)	132, 210, 444
Cfr13I	GGNCC	4 cut(s)	48, 172, 229, 241
CseI	GACGC	1 cut(s)	166
Csp6I	GTAC	1 cut(s)	426
CviJI	RGCY	7 cut(s)	50, 98, 242, 260, 386, 412, 433
CviKI_1	RGCY	7 cut(s)	50, 98, 242, 260, 386, 412, 433
CviQI	GTAC	1 cut(s)	426
DpnI	GATC	1 cut(s)	7
DpnII	GATC	1 cut(s)	5
EciI	GGCGGA	1 cut(s)	285
Eco130I	CCWWGG	1 cut(s)	81
Eco32I	GATATC	1 cut(s)	379
Eco47I	GGWCC	2 cut(s)	172, 229
Eco88I	CYCGRG	1 cut(s)	261
EcoRII	CCWGG	1 cut(s)	348
EcoRV	GATATC	1 cut(s)	379
EcoT14I	CCWWGG	1 cut(s)	81
EcoT22I	ATGCAT	1 cut(s)	400
ErhI	CCWWGG	1 cut(s)	81
Esp3I	CGTCTC	1 cut(s)	38
FaiI	YATR	4 cut(s)	38, 224, 368, 455
FblI	GTMKAC	1 cut(s)	180
Fnu4HI	GCNGC	2 cut(s)	51, 198
FokI	GGATG	3 cut(s)	139, 217, 431
Fsp4HI	GCNGC	2 cut(s)	51, 198
FspBI	CTAG	2 cut(s)	122, 185
GluI	GCNGC	2 cut(s)	51, 198
GsuI	CTGGAG	1 cut(s)	332
HaeIII	GGCC	2 cut(s)	50, 242
HgaI	GACGC	1 cut(s)	166
HincII	GTYRAC	1 cut(s)	181
HindII	GTYRAC	1 cut(s)	181
HphI	GGTGA	1 cut(s)	364
Hpy166II	GTNNAC	2 cut(s)	181, 361
Hpy188I	TCNGA	3 cut(s)	17, 306, 383
Hpy188III	TCNNGA	1 cut(s)	403
Hpy8I	GTNNAC	2 cut(s)	181, 361
Hpy99I	CGWCG	1 cut(s)	182
HpyAV	CCTTC	2 cut(s)	267, 478
HpyCH4IV	ACGT	1 cut(s)	21
HpyCH4V	TGCA	1 cut(s)	398
HpySE526I	ACGT	1 cut(s)	21
Kzo9I	GATC	1 cut(s)	5
LpnPI	CCDG	9 cut(s)	130, 335, 362, 388, 398, 452, 466, 480, 510
LweI	GCATC	2 cut(s)	322, 385
MaeI	CTAG	2 cut(s)	122, 185
MaeII	ACGT	1 cut(s)	21
MaeIII	GTNAC	3 cut(s)	22, 157, 469
MalI	GATC	1 cut(s)	7
MboI	GATC	1 cut(s)	5
MboII	GAAGA	2 cut(s)	302, 386
MflI	RGATCY	1 cut(s)	5
MhlI	GDGCHC	1 cut(s)	141
MmeI	TCCRAC	1 cut(s)	150
MnlI	CCTC	6 cut(s)	205, 257, 260, 280, 509, 513
Mph1103I	ATGCAT	1 cut(s)	400
MslI	CAYNNNNRTG	1 cut(s)	164
MspR9I	CCNGG	1 cut(s)	350
Mva1269I	GAATGC	1 cut(s)	398
MvaI	CCWGG	1 cut(s)	350
MvnI	CGCG	1 cut(s)	177
NdeII	GATC	1 cut(s)	5
NlaIV	GGNNCC	2 cut(s)	49, 138
NmuCI	GTSAC	2 cut(s)	157, 469
NsiI	ATGCAT	1 cut(s)	400
OliI	CACNNNNGTG	1 cut(s)	164
PaeR7I	CTCGAG	1 cut(s)	261
PctI	GAATGC	1 cut(s)	398
PflFI	GACNNNGTC	1 cut(s)	176
PflMI	CCANNNNNTGG	1 cut(s)	355
PkrI	GCNGC	2 cut(s)	52, 199
Psp6I	CCWGG	1 cut(s)	348
PspGI	CCWGG	1 cut(s)	348
PspN4I	GGNNCC	2 cut(s)	49, 138
PspPI	GGNCC	4 cut(s)	48, 172, 229, 241
PspXI	VCTCGAGB	1 cut(s)	261
PsuI	RGATCY	1 cut(s)	5
PsyI	GACNNNGTC	1 cut(s)	176
RsaI	GTAC	1 cut(s)	427
RsaNI	GTAC	1 cut(s)	426
RseI	CAYNNNNRTG	1 cut(s)	164
SalI	GTCGAC	1 cut(s)	179
SatI	GCNGC	2 cut(s)	51, 198
Sau3AI	GATC	1 cut(s)	5
Sau96I	GGNCC	4 cut(s)	48, 172, 229, 241
ScrFI	CCNGG	1 cut(s)	350
SduI	GDGCHC	1 cut(s)	141
SfaNI	GCATC	2 cut(s)	322, 385
SfcI	CTRYAG	2 cut(s)	453, 478
Sfr274I	CTCGAG	1 cut(s)	261
SinI	GGWCC	2 cut(s)	172, 229
SlaI	CTCGAG	1 cut(s)	261
SmiMI	CAYNNNNRTG	1 cut(s)	164
SmlI	CTYRAG	2 cut(s)	261, 504
SmoI	CTYRAG	2 cut(s)	261, 504
SsiI	CCGC	4 cut(s)	51, 175, 197, 270
SspMI	CTAG	2 cut(s)	122, 185
StyD4I	CCNGG	1 cut(s)	348
StyI	CCWWGG	1 cut(s)	81
TaiI	ACGT	1 cut(s)	24
TaqI	TCGA	2 cut(s)	180, 262
TaqII	GACCGA	1 cut(s)	246
TauI	GCSGC	2 cut(s)	53, 200
TseFI	GTSAC	2 cut(s)	157, 469
Tsp45I	GTSAC	2 cut(s)	157, 469
TspGWI	ACGGA	3 cut(s)	217, 437, 488
Tth111I	GACNNNGTC	1 cut(s)	176
Van91I	CCANNNNNTGG	1 cut(s)	355
VpaK11BI	GGWCC	2 cut(s)	172, 229
XhoI	CTCGAG	1 cut(s)	261
XmiI	GTMKAC	1 cut(s)	180
XspI	CTAG	2 cut(s)	122, 185
Zsp2I	ATGCAT	1 cut(s)	400

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.