pycom01g11080

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0000385
Physical Location & Seq
Reverse (-)
11971788 .. 11985020
13233 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g11080.2

Sequence Viewer

Length: 498 bp
ATGGGGCTTTATATATGCAAGGCGTTGGACTCCAAGGTAATTGACTCCTTTAAACCCAAATCCTATAATGGGAAAAGGGAAGCAAAGGAGCTCGACACATTCATGTGGAACGTGGAGCGATACTTCAAGTACTTGAAGCTTGAAGATGACGAGTCCAAAATCTCAACGGCAACCATGTTCTTAGCTGACAATGCCCTTATGTGGTGGCGTCGTCGGAGCATGGAGATTGAGCAAGGTACGTTCTCCCTCACCACTTGGGATGAATTTAAGAAAGATCTTATGTTGCATTTCTATCCCCAAAATGCCAAGTACGAAGCCAAGGAGAAACTAAGGTGGCTCAAGCAAACGGGGAGCGTCAAAGACTATGTCAACACCTTCGTGAGTTTGTTATTCGAGGTGCCCAACATGTTAGAGGAAGACAAGCTCATGTACTTCATGAGTGGACTGCAAAATTGGGGGAATGGACGGACCGGTGTCAAGAGGCTTTTGAGAGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Asp_protease_2 Chromo RVT_1 Retrotrans_gag gag-asp_proteas rve

Protein Analysis

166

Amino Acids

19.68

Weight (kDa)

9.02

Isoelectric Point (pI)

40.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000385)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g23713 FvH4_1g25744 FvH4_2g00261 FvH4_2g00262 FvH4_2g15681 FvH4_2g17851 FvH4_2g35550 FvH4_3g05280 FvH4_3g10531 FvH4_3g25910 FvH4_3g28953 FvH4_3g33371 FvH4_3g33536 FvH4_3g36090 FvH4_4g03471 FvH4_4g03480 FvH4_4g06701 FvH4_4g19351 FvH4_4g34281 FvH4_5g00040 FvH4_5g03811 FvH4_5g03812 FvH4_5g11822 FvH4_5g30921 FvH4_5g31701 FvH4_6g12161 FvH4_6g15222 FvH4_6g15223 FvH4_6g17701 FvH4_6g17710 FvH4_6g19301 FvH4_6g33011 FvH4_6g34501 FvH4_6g50161 FvH4_7g04111 FvH4_7g04120 FvH4_7g04121 FvH4_7g04122 FvH4_7g04123 FvH4_7g28231 FvH4_c7g00010
malus_domestica MD12G1084200.v1.1
prunus_persica Prupe.1G206200_v2.0.a1 Prupe.8G085600_v2.0.a1
pyrus_communis pycom01g11080 pycom02g20500 pycom09g18370 pycom12555g00210 pycom13g23120 pycom14g10590 pycom16g17620 pycom16g22750
rosa_chinensis RchiOBHm_Chr2g0137481 RchiOBHm_Chr6g0251961 RchiOBHm_Chr7g0185821
rosa_laevigata RLG00000005585 RLG00000010281 RLG00000010912 RLG00000030342 RLG00000034281
rosa_multiflora Rmu_sc0000096.1_g000010 Rmu_sc0002481.1_g000045 Rmu_sc0003598.1_g000009 Rmu_sc0003863.1_g000019 Rmu_sc0003973.1_g000002 Rmu_sc0004823.1_g000050 Rmu_sc0005621.1_g000007 Rmu_sc0006537.1_g000030 Rmu_sc0006608.1_g000014 Rmu_sc0008506.1_g000007 Rmu_sc0014428.1_g000001 Rmu_sc0035437.1_g000001 Rmu_ssc0000396.1_g000022
rosa_roxburghii Rroxscaffold_175G00432300 Rroxscaffold_17G00435390 Rroxscaffold_27G00446590 Rroxscaffold_29G00441820 Rroxscaffold_31G00438110 Rroxscaffold_32G00442750 Rroxscaffold_33G00439810 Rroxscaffold_37G00445160 Rroxscaffold_4G00306500 Rroxscaffold_4G00327700 Rroxscaffold_4G00332630 Rroxscaffold_52G00439360 Rroxscaffold_63G00444420 Rroxscaffold_76G00448580 Rroxscaffold_7G00156270
rosa_rugosa Rorug03G0295200
rosa_samantha Rh1BG433700 Rh1CG115400 Rh2AG676300 Rh2CG341800 Rh2DG381400 Rh3BG370100 Rh3BG370200 Rh4AG441600 Rh4BG076500 Rh4BG107400 Rh5BG005600 Rh6BG010100 Rh7BG000200
rosa_wichuraiana Rw0G003820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 397
AcsI RAATTY 1 cut(s) 263
AcyI GRCGYC 1 cut(s) 208
AfaI GTAC 4 cut(s) 131, 238, 311, 431
AfiI CCNNNNNNNGG 2 cut(s) 69, 201
AflIII ACRYGT 1 cut(s) 405
AgeI ACCGGT 1 cut(s) 470
AgsI TTSAA 3 cut(s) 127, 136, 143
AleI CACNNNNGTG 1 cut(s) 377
AluBI AGCT 4 cut(s) 91, 139, 185, 424
AluI AGCT 4 cut(s) 91, 139, 185, 424
Alw21I GWGCWC 1 cut(s) 93
ApoI RAATTY 1 cut(s) 263
ArsI GACNNNNNNTTYG 2 cut(s) 351, 383
AsiGI ACCGGT 1 cut(s) 470
AspS9I GGNCC 1 cut(s) 468
AsuHPI GGTGA 1 cut(s) 241
AvaII GGWCC 1 cut(s) 468
BaeGI GKGCMC 1 cut(s) 402
BanI GGYRCC 1 cut(s) 397
BanII GRGCYC 1 cut(s) 93
BbsI GAAGAC 1 cut(s) 423
Bbv12I GWGCWC 1 cut(s) 93
BceAI ACGGC 1 cut(s) 183
BglII AGATCT 1 cut(s) 274
BmcAI AGTACT 1 cut(s) 131
Bme18I GGWCC 1 cut(s) 468
BmgT120I GGNCC 1 cut(s) 468
BmiI GGNNCC 1 cut(s) 399
BoxI GACNNNNGTC 1 cut(s) 473
BpiI GAAGAC 1 cut(s) 423
BpuEI CTTGAG 1 cut(s) 323
BsaHI GRCGYC 1 cut(s) 208
BsaJI CCNNGG 2 cut(s) 33, 318
BsaWI WCCGGW 1 cut(s) 470
Bsc4I CCNNNNNNNGG 2 cut(s) 69, 201
Bse118I RCCGGY 1 cut(s) 470
BseDI CCNNGG 2 cut(s) 33, 318
BseGI GGATG 1 cut(s) 265
BseLI CCNNNNNNNGG 2 cut(s) 69, 201
BseSI GKGCMC 1 cut(s) 402
BshNI GGYRCC 1 cut(s) 397
BshTI ACCGGT 1 cut(s) 470
BsiHKAI GWGCWC 1 cut(s) 93
BsiSI CCGG 1 cut(s) 471
BslI CCNNNNNNNGG 2 cut(s) 69, 201
Bsp1286I GDGCHC 2 cut(s) 93, 402
Bsp143I GATC 1 cut(s) 274
BspHI TCATGA 1 cut(s) 435
BspLI GGNNCC 1 cut(s) 399
BspT107I GGYRCC 1 cut(s) 397
BsrFI RCCGGY 1 cut(s) 470
BssAI RCCGGY 1 cut(s) 470
BssECI CCNNGG 2 cut(s) 33, 318
BssMI GATC 1 cut(s) 274
BssNI GRCGYC 1 cut(s) 208
BssT1I CCWWGG 2 cut(s) 33, 318
BstACI GRCGYC 1 cut(s) 208
BstDEI CTNAG 2 cut(s) 181, 329
BstF5I GGATG 1 cut(s) 265
BstKTI GATC 1 cut(s) 277
BstMBI GATC 1 cut(s) 274
BstMWI GCNNNNNNNGC 1 cut(s) 191
BstNSI RCATGY 1 cut(s) 409
BstPAI GACNNNNGTC 1 cut(s) 473
BstSLI GKGCMC 1 cut(s) 402
BstV2I GAAGAC 1 cut(s) 423
BstX2I RGATCY 1 cut(s) 274
BstYI RGATCY 1 cut(s) 274
BtsCI GGATG 1 cut(s) 265
CciI TCATGA 1 cut(s) 435
Cfr10I RCCGGY 1 cut(s) 470
Cfr13I GGNCC 1 cut(s) 468
CpoI CGGWCCG 1 cut(s) 468
CseI GACGC 2 cut(s) 197, 343
Csp6I GTAC 4 cut(s) 130, 237, 310, 430
CspAI ACCGGT 1 cut(s) 470
CspI CGGWCCG 1 cut(s) 468
CviAII CATG 6 cut(s) 103, 175, 220, 406, 427, 436
CviJI RGCY 8 cut(s) 7, 91, 139, 185, 317, 337, 424, 484
CviKI_1 RGCY 8 cut(s) 7, 91, 139, 185, 317, 337, 424, 484
CviQI GTAC 4 cut(s) 130, 237, 310, 430
DdeI CTNAG 2 cut(s) 181, 329
DpnI GATC 1 cut(s) 276
DpnII GATC 1 cut(s) 274
DraI TTTAAA 1 cut(s) 52
Ecl136II GAGCTC 1 cut(s) 91
Eco130I CCWWGG 2 cut(s) 33, 318
Eco24I GRGCYC 1 cut(s) 93
Eco47I GGWCC 1 cut(s) 468
Eco53kI GAGCTC 1 cut(s) 91
EcoICRI GAGCTC 1 cut(s) 91
EcoT14I CCWWGG 2 cut(s) 33, 318
EcoT38I GRGCYC 1 cut(s) 93
ErhI CCWWGG 2 cut(s) 33, 318
FaeI CATG 6 cut(s) 106, 178, 223, 409, 430, 439
FatI CATG 6 cut(s) 102, 174, 219, 405, 426, 435
FokI GGATG 1 cut(s) 272
FriOI GRGCYC 1 cut(s) 93
HapII CCGG 1 cut(s) 471
HgaI GACGC 2 cut(s) 197, 343
Hin1I GRCGYC 1 cut(s) 208
Hin1II CATG 6 cut(s) 106, 178, 223, 409, 430, 439
HincII GTYRAC 1 cut(s) 370
HindII GTYRAC 1 cut(s) 370
HindIII AAGCTT 1 cut(s) 137
HinfI GANTC 3 cut(s) 29, 44, 152
HpaII CCGG 1 cut(s) 471
HphI GGTGA 1 cut(s) 241
Hpy166II GTNNAC 2 cut(s) 370, 443
Hpy188I TCNGA 1 cut(s) 216
Hpy188III TCNNGA 3 cut(s) 379, 436, 478
Hpy8I GTNNAC 2 cut(s) 370, 443
Hpy99I CGWCG 2 cut(s) 213, 216
HpyAV CCTTC 1 cut(s) 385
HpyCH4IV ACGT 2 cut(s) 111, 239
HpyCH4V TGCA 3 cut(s) 18, 286, 448
HpyF10VI GCNNNNNNNGC 1 cut(s) 191
HpyF3I CTNAG 2 cut(s) 181, 329
HpySE526I ACGT 2 cut(s) 111, 239
Hsp92I GRCGYC 1 cut(s) 208
Hsp92II CATG 6 cut(s) 106, 178, 223, 409, 430, 439
Kzo9I GATC 1 cut(s) 274
LmnI GCTCC 4 cut(s) 88, 115, 216, 351
LpnPI CCDG 1 cut(s) 484
MaeII ACGT 2 cut(s) 111, 239
MalI GATC 1 cut(s) 276
MboI GATC 1 cut(s) 274
MboII GAAGA 2 cut(s) 155, 428
MflI RGATCY 1 cut(s) 274
MhlI GDGCHC 2 cut(s) 93, 402
MluCI AATT 3 cut(s) 39, 263, 451
MlyI GAGTC 3 cut(s) 23, 38, 161
MmeI TCCRAC 2 cut(s) 6, 194
MnlI CCTC 5 cut(s) 257, 388, 406, 474, 485
MseI TTAA 2 cut(s) 51, 267
MslI CAYNNNNRTG 3 cut(s) 101, 103, 377
MspI CCGG 1 cut(s) 471
MwoI GCNNNNNNNGC 1 cut(s) 191
NdeII GATC 1 cut(s) 274
NlaIII CATG 6 cut(s) 106, 178, 223, 409, 430, 439
NlaIV GGNNCC 1 cut(s) 399
NspI RCATGY 1 cut(s) 409
OliI CACNNNNGTG 1 cut(s) 377
PagI TCATGA 1 cut(s) 435
PciI ACATGT 1 cut(s) 405
PflFI GACNNNGTC 1 cut(s) 365
PinAI ACCGGT 1 cut(s) 470
PleI GAGTC 3 cut(s) 23, 38, 160
PpsI GAGTC 3 cut(s) 23, 38, 160
PscI ACATGT 1 cut(s) 405
PshAI GACNNNNGTC 1 cut(s) 473
Psp124BI GAGCTC 1 cut(s) 93
PspN4I GGNNCC 1 cut(s) 399
PspPI GGNCC 1 cut(s) 468
PsuI RGATCY 1 cut(s) 274
PsyI GACNNNGTC 1 cut(s) 365
RsaI GTAC 4 cut(s) 131, 238, 311, 431
RsaNI GTAC 4 cut(s) 130, 237, 310, 430
RseI CAYNNNNRTG 3 cut(s) 101, 103, 377
Rsr2I CGGWCCG 1 cut(s) 468
RsrII CGGWCCG 1 cut(s) 468
SacI GAGCTC 1 cut(s) 93
SaqAI TTAA 2 cut(s) 51, 267
Sau3AI GATC 1 cut(s) 274
Sau96I GGNCC 1 cut(s) 468
ScaI AGTACT 1 cut(s) 131
SchI GAGTC 3 cut(s) 23, 38, 161
SduI GDGCHC 2 cut(s) 93, 402
SinI GGWCC 1 cut(s) 468
SmiMI CAYNNNNRTG 3 cut(s) 101, 103, 377
SmlI CTYRAG 1 cut(s) 338
SmoI CTYRAG 1 cut(s) 338
Sse9I AATT 3 cut(s) 39, 263, 451
SstI GAGCTC 1 cut(s) 93
StyI CCWWGG 2 cut(s) 33, 318
TaiI ACGT 2 cut(s) 114, 242
TaqI TCGA 2 cut(s) 93, 393
TasI AATT 3 cut(s) 39, 263, 451
TatI WGTACW 2 cut(s) 129, 429
Tru1I TTAA 2 cut(s) 51, 267
Tru9I TTAA 2 cut(s) 51, 267
TspDTI ATGAA 3 cut(s) 91, 276, 424
TspGWI ACGGA 1 cut(s) 481
Tth111I GACNNNGTC 1 cut(s) 365
VpaK11BI GGWCC 1 cut(s) 468
XapI RAATTY 1 cut(s) 263
XceI RCATGY 1 cut(s) 409
ZrmI AGTACT 1 cut(s) 131
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.