FvH4_6g17701

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000385
Physical Location & Seq
Reverse (-)
11615845 .. 11616523
679 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g17701.t1

Sequence Viewer

Length: 540 bp
ATGATGCAGCCAAGTGGGAGAAAGCAGCGGGCAACAAGCAAGAAGATGAAGTACAAGACCCGTTGGCAACGAGGGCGCCACCAAACTCAAAAGGGGGAGGCACAAGCAAGGACAAGCTCTAGTAGGATGGGAAAGTTGGTATGCGACAACAAACCAAGACAAAGGAAGGAAGGTGGCATGGACCCCAAAGGCTCGGCAGGGATACATGAAAAGGTGCACTGCTGGGCGCATGTCAAGTGTGCTCGGCAGGGTGCTACGAAGGTGCGAGAAGGGTGCGAGAAAGGTGCGCTGCAGGGTGCTCGGCAAGGTGCGCGGCAGGGTGCGCGTGGATGCACTGTAGGGTGCATACGTGTGCATGGCGGTTACAAGCGGTTGACAAAGCAAGTTAGTGGGAAGTTATCTCCACAAAGCATGCAAGTTAGTGGGCGGTTACCTAGCACCAAAAGTGGGGAAGTTGACAAGGAAGTTATGCATATCTTGGTGGTTATCTATAAGGTAGTTATTAATCCTATAATAGTGGGAGATGTCTACTACTCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

180

Amino Acids

19.79

Weight (kDa)

10.47

Isoelectric Point (pI)

36.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000385)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g23713 FvH4_1g25744 FvH4_2g00261 FvH4_2g00262 FvH4_2g15681 FvH4_2g17851 FvH4_2g35550 FvH4_3g05280 FvH4_3g10531 FvH4_3g25910 FvH4_3g28953 FvH4_3g33371 FvH4_3g33536 FvH4_3g36090 FvH4_4g03471 FvH4_4g03480 FvH4_4g06701 FvH4_4g19351 FvH4_4g34281 FvH4_5g00040 FvH4_5g03811 FvH4_5g03812 FvH4_5g11822 FvH4_5g30921 FvH4_5g31701 FvH4_6g12161 FvH4_6g15222 FvH4_6g15223 FvH4_6g17701 FvH4_6g17710 FvH4_6g19301 FvH4_6g33011 FvH4_6g34501 FvH4_6g50161 FvH4_7g04111 FvH4_7g04120 FvH4_7g04121 FvH4_7g04122 FvH4_7g04123 FvH4_7g28231 FvH4_c7g00010
malus_domestica MD12G1084200.v1.1
prunus_persica Prupe.1G206200_v2.0.a1 Prupe.8G085600_v2.0.a1
pyrus_communis pycom01g11080 pycom02g20500 pycom09g18370 pycom12555g00210 pycom13g23120 pycom14g10590 pycom16g17620 pycom16g22750
rosa_chinensis RchiOBHm_Chr2g0137481 RchiOBHm_Chr6g0251961 RchiOBHm_Chr7g0185821
rosa_laevigata RLG00000005585 RLG00000010281 RLG00000010912 RLG00000030342 RLG00000034281
rosa_multiflora Rmu_sc0000096.1_g000010 Rmu_sc0002481.1_g000045 Rmu_sc0003598.1_g000009 Rmu_sc0003863.1_g000019 Rmu_sc0003973.1_g000002 Rmu_sc0004823.1_g000050 Rmu_sc0005621.1_g000007 Rmu_sc0006537.1_g000030 Rmu_sc0006608.1_g000014 Rmu_sc0008506.1_g000007 Rmu_sc0014428.1_g000001 Rmu_sc0035437.1_g000001 Rmu_ssc0000396.1_g000022
rosa_roxburghii Rroxscaffold_175G00432300 Rroxscaffold_17G00435390 Rroxscaffold_27G00446590 Rroxscaffold_29G00441820 Rroxscaffold_31G00438110 Rroxscaffold_32G00442750 Rroxscaffold_33G00439810 Rroxscaffold_37G00445160 Rroxscaffold_4G00306500 Rroxscaffold_4G00327700 Rroxscaffold_4G00332630 Rroxscaffold_52G00439360 Rroxscaffold_63G00444420 Rroxscaffold_76G00448580 Rroxscaffold_7G00156270
rosa_rugosa Rorug03G0295200
rosa_samantha Rh1BG433700 Rh1CG115400 Rh2AG676300 Rh2CG341800 Rh2DG381400 Rh3BG370100 Rh3BG370200 Rh4AG441600 Rh4BG076500 Rh4BG107400 Rh5BG005600 Rh6BG010100 Rh7BG000200
rosa_wichuraiana Rw0G003820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 75
AccI GTMKAC 1 cut(s) 528
AccII CGCG 2 cut(s) 313, 325
AciI CCGC 5 cut(s) 28, 313, 360, 370, 427
AcyI GRCGYC 1 cut(s) 76
AfaI GTAC 1 cut(s) 53
AfiI CCNNNNNNNGG 1 cut(s) 447
AflIII ACRYGT 1 cut(s) 349
AluBI AGCT 1 cut(s) 117
AluI AGCT 1 cut(s) 117
Alw21I GWGCWC 3 cut(s) 219, 244, 301
Alw44I GTGCAC 1 cut(s) 215
ApaLI GTGCAC 1 cut(s) 215
ApeKI GCWGC 3 cut(s) 7, 25, 289
AseI ATTAAT 1 cut(s) 504
AspLEI GCGC 5 cut(s) 78, 229, 289, 313, 325
AspS9I GGNCC 1 cut(s) 181
AvaII GGWCC 1 cut(s) 181
BaeGI GKGCMC 1 cut(s) 219
BanI GGYRCC 1 cut(s) 75
BarI GAAGNNNNNNTAC 2 cut(s) 35, 67
Bbv12I GWGCWC 3 cut(s) 219, 244, 301
BbvI GCAGC 3 cut(s) 19, 37, 276
BccI CCATC 1 cut(s) 121
BcgI CGANNNNNNTGC 6 cut(s) 255, 266, 281, 289, 300, 315
BciVI GTATCC 1 cut(s) 195
BfaI CTAG 2 cut(s) 120, 435
BfmI CTRYAG 2 cut(s) 290, 336
BfoI RGCGCY 1 cut(s) 79
BfuI GTATCC 1 cut(s) 195
BisI GCNGC 4 cut(s) 8, 26, 290, 314
BlsI GCNGC 4 cut(s) 9, 27, 291, 315
Bme18I GGWCC 1 cut(s) 181
BmgT120I GGNCC 1 cut(s) 181
BmiI GGNNCC 2 cut(s) 77, 183
BmsI GCATC 1 cut(s) 320
BsaAI YACGTR 1 cut(s) 350
BsaHI GRCGYC 1 cut(s) 76
Bsc4I CCNNNNNNNGG 1 cut(s) 447
BseGI GGATG 2 cut(s) 132, 335
BseLI CCNNNNNNNGG 1 cut(s) 447
BseSI GKGCMC 1 cut(s) 219
BseXI GCAGC 3 cut(s) 19, 37, 276
BseYI CCCAGC 1 cut(s) 222
Bsh1236I CGCG 2 cut(s) 313, 325
BshNI GGYRCC 1 cut(s) 75
BsiHKAI GWGCWC 3 cut(s) 219, 244, 301
BslI CCNNNNNNNGG 1 cut(s) 447
Bsp1286I GDGCHC 3 cut(s) 219, 244, 301
BspACI CCGC 5 cut(s) 28, 313, 360, 370, 427
BspFNI CGCG 2 cut(s) 313, 325
BspLI GGNNCC 2 cut(s) 77, 183
BspMAI CTGCAG 1 cut(s) 294
BspT107I GGYRCC 1 cut(s) 75
BssNI GRCGYC 1 cut(s) 76
Bst4CI ACNGT 1 cut(s) 337
BstACI GRCGYC 1 cut(s) 76
BstBAI YACGTR 1 cut(s) 350
BstC8I GCNNGC 2 cut(s) 30, 413
BstEII GGTNACC 1 cut(s) 429
BstF5I GGATG 2 cut(s) 132, 335
BstFNI CGCG 2 cut(s) 313, 325
BstH2I RGCGCY 1 cut(s) 79
BstHHI GCGC 5 cut(s) 78, 229, 289, 313, 325
BstMWI GCNNNNNNNGC 3 cut(s) 73, 310, 322
BstNSI RCATGY 2 cut(s) 233, 415
BstPI GGTNACC 1 cut(s) 429
BstSFI CTRYAG 2 cut(s) 290, 336
BstSLI GKGCMC 1 cut(s) 219
BstUI CGCG 2 cut(s) 313, 325
BstV1I GCAGC 3 cut(s) 19, 37, 276
BsuI GTATCC 1 cut(s) 195
BtsCI GGATG 2 cut(s) 132, 335
BtsI GCAGTG 1 cut(s) 217
BtsIMutI CAGTG 2 cut(s) 217, 333
Cac8I GCNNGC 2 cut(s) 30, 413
CfoI GCGC 5 cut(s) 78, 229, 289, 313, 325
Cfr13I GGNCC 1 cut(s) 181
Csp6I GTAC 1 cut(s) 52
CviAII CATG 5 cut(s) 178, 206, 230, 356, 412
CviJI RGCY 3 cut(s) 10, 117, 192
CviKI_1 RGCY 3 cut(s) 10, 117, 192
CviQI GTAC 1 cut(s) 52
DinI GGCGCC 1 cut(s) 77
Eco47I GGWCC 1 cut(s) 181
Eco91I GGTNACC 1 cut(s) 429
EcoO65I GGTNACC 1 cut(s) 429
EcoT22I ATGCAT 1 cut(s) 474
EgeI GGCGCC 1 cut(s) 77
EheI GGCGCC 1 cut(s) 77
FaeI CATG 5 cut(s) 181, 209, 233, 359, 415
FatI CATG 5 cut(s) 177, 205, 229, 355, 411
FauI CCCGC 1 cut(s) 21
FblI GTMKAC 1 cut(s) 528
Fnu4HI GCNGC 4 cut(s) 8, 26, 290, 314
FokI GGATG 2 cut(s) 139, 342
Fsp4HI GCNGC 4 cut(s) 8, 26, 290, 314
FspBI CTAG 2 cut(s) 120, 435
GlaI GCGC 5 cut(s) 77, 228, 288, 312, 324
GluI GCNGC 4 cut(s) 8, 26, 290, 314
GsaI CCCAGC 1 cut(s) 226
HaeII RGCGCY 1 cut(s) 79
HhaI GCGC 5 cut(s) 78, 229, 289, 313, 325
Hin1I GRCGYC 1 cut(s) 76
Hin1II CATG 5 cut(s) 181, 209, 233, 359, 415
Hin6I GCGC 5 cut(s) 76, 227, 287, 311, 323
HinP1I GCGC 5 cut(s) 76, 227, 287, 311, 323
HincII GTYRAC 2 cut(s) 375, 457
HindII GTYRAC 2 cut(s) 375, 457
Hpy166II GTNNAC 4 cut(s) 217, 375, 457, 529
Hpy8I GTNNAC 4 cut(s) 217, 375, 457, 529
HpyAV CCTTC 4 cut(s) 160, 164, 253, 263
HpyCH4III ACNGT 1 cut(s) 337
HpyCH4IV ACGT 1 cut(s) 349
HpyCH4V TGCA 8 cut(s) 7, 217, 292, 333, 345, 355, 415, 472
HpyF10VI GCNNNNNNNGC 3 cut(s) 73, 310, 322
HpySE526I ACGT 1 cut(s) 349
Hsp92I GRCGYC 1 cut(s) 76
Hsp92II CATG 5 cut(s) 181, 209, 233, 359, 415
HspAI GCGC 5 cut(s) 76, 227, 287, 311, 323
KasI GGCGCC 1 cut(s) 75
LpnPI CCDG 5 cut(s) 183, 208, 233, 278, 302
Lsp1109I GCAGC 3 cut(s) 19, 37, 276
LweI GCATC 1 cut(s) 320
MaeI CTAG 2 cut(s) 120, 435
MaeII ACGT 1 cut(s) 349
MaeIII GTNAC 2 cut(s) 362, 429
MboII GAAGA 1 cut(s) 55
MhlI GDGCHC 3 cut(s) 219, 244, 301
Mly113I GGCGCC 1 cut(s) 76
MnlI CCTC 2 cut(s) 65, 91
Mph1103I ATGCAT 1 cut(s) 474
MseI TTAA 1 cut(s) 504
MslI CAYNNNNRTG 1 cut(s) 350
MspA1I CMGCKG 1 cut(s) 28
MvnI CGCG 2 cut(s) 313, 325
MwoI GCNNNNNNNGC 3 cut(s) 73, 310, 322
NarI GGCGCC 1 cut(s) 76
NlaIII CATG 5 cut(s) 181, 209, 233, 359, 415
NlaIV GGNNCC 2 cut(s) 77, 183
NmeAIII GCCGAG 3 cut(s) 173, 223, 280
NsiI ATGCAT 1 cut(s) 474
NspI RCATGY 2 cut(s) 233, 415
PaeI GCATGC 1 cut(s) 415
PkrI GCNGC 4 cut(s) 9, 27, 291, 315
PluTI GGCGCC 1 cut(s) 79
Ppu21I YACGTR 1 cut(s) 350
PshBI ATTAAT 1 cut(s) 504
PspEI GGTNACC 1 cut(s) 429
PspFI CCCAGC 1 cut(s) 222
PspN4I GGNNCC 2 cut(s) 77, 183
PspPI GGNCC 1 cut(s) 181
PstI CTGCAG 1 cut(s) 294
RsaI GTAC 1 cut(s) 53
RsaNI GTAC 1 cut(s) 52
RseI CAYNNNNRTG 1 cut(s) 350
SaqAI TTAA 1 cut(s) 504
SatI GCNGC 4 cut(s) 8, 26, 290, 314
Sau96I GGNCC 1 cut(s) 181
SduI GDGCHC 3 cut(s) 219, 244, 301
SetI ASST 9 cut(s) 119, 175, 216, 264, 286, 310, 352, 436, 498
SfaNI GCATC 1 cut(s) 320
SfcI CTRYAG 2 cut(s) 290, 336
SfoI GGCGCC 1 cut(s) 77
SinI GGWCC 1 cut(s) 181
SmiMI CAYNNNNRTG 1 cut(s) 350
SphI GCATGC 1 cut(s) 415
SsiI CCGC 5 cut(s) 28, 313, 360, 370, 427
SspDI GGCGCC 1 cut(s) 75
SspMI CTAG 2 cut(s) 120, 435
TaaI ACNGT 1 cut(s) 337
TaiI ACGT 1 cut(s) 352
TatI WGTACW 1 cut(s) 51
TauI GCSGC 1 cut(s) 316
Tru1I TTAA 1 cut(s) 504
Tru9I TTAA 1 cut(s) 504
TscAI CASTG 2 cut(s) 224, 340
TseI GCWGC 3 cut(s) 7, 25, 289
TspDTI ATGAA 2 cut(s) 62, 222
TspRI CASTG 2 cut(s) 224, 340
VneI GTGCAC 1 cut(s) 215
VpaK11BI GGWCC 1 cut(s) 181
VspI ATTAAT 1 cut(s) 504
XceI RCATGY 2 cut(s) 233, 415
XmiI GTMKAC 1 cut(s) 528
XspI CTAG 2 cut(s) 120, 435
Zsp2I ATGCAT 1 cut(s) 474
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.