FvH4_2g35550

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000385
Physical Location & Seq
Reverse (-)
26209808 .. 26210407
600 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g35550.t1

Sequence Viewer

Length: 474 bp
ATGCAATTGATTACTTACTGGCCTCCTGTTACACCCCTAAAGCTTCATAGGCGGCAAAGGCGCGCGGCATGGGTTGTCTTTGCACCATGTTGGGACGCACGAAGGCTCAAGCAAGGACAAGCTCTAGTAGGATGGGAAAGTTGGTATGCGGCAACGAACCAAGCCAAAGGAAGGAAGGCGGCATGGACCCCAAAGGCTCGGCAGGGTGCAGCGTCGGGGTGCTACGAAGGTGCGCTGCAGGGTGCTCGGCAGGGTGCGCGCGGATGCACTCTAGGGTGCATACGTGTGCATGGCGGTTACAAGCGGTTGACAAAGCAAGTTAGTGAGAAGTTATCTCCACACAGTATGCAAGTTAGTAGGCGGTTACCTAGCACCAAAAGTGGGGAAGTTGGCAAGGAAGTTATGCATATCTTGGTGGTTATCTATAAGGTAGTTAATAATCCTATAATAGTGGGGGATGTCCACTACTCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

158

Amino Acids

17.52

Weight (kDa)

10.47

Isoelectric Point (pI)

47.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000385)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g23713 FvH4_1g25744 FvH4_2g00261 FvH4_2g00262 FvH4_2g15681 FvH4_2g17851 FvH4_2g35550 FvH4_3g05280 FvH4_3g10531 FvH4_3g25910 FvH4_3g28953 FvH4_3g33371 FvH4_3g33536 FvH4_3g36090 FvH4_4g03471 FvH4_4g03480 FvH4_4g06701 FvH4_4g19351 FvH4_4g34281 FvH4_5g00040 FvH4_5g03811 FvH4_5g03812 FvH4_5g11822 FvH4_5g30921 FvH4_5g31701 FvH4_6g12161 FvH4_6g15222 FvH4_6g15223 FvH4_6g17701 FvH4_6g17710 FvH4_6g19301 FvH4_6g33011 FvH4_6g34501 FvH4_6g50161 FvH4_7g04111 FvH4_7g04120 FvH4_7g04121 FvH4_7g04122 FvH4_7g04123 FvH4_7g28231 FvH4_c7g00010
malus_domestica MD12G1084200.v1.1
prunus_persica Prupe.1G206200_v2.0.a1 Prupe.8G085600_v2.0.a1
pyrus_communis pycom01g11080 pycom02g20500 pycom09g18370 pycom12555g00210 pycom13g23120 pycom14g10590 pycom16g17620 pycom16g22750
rosa_chinensis RchiOBHm_Chr2g0137481 RchiOBHm_Chr6g0251961 RchiOBHm_Chr7g0185821
rosa_laevigata RLG00000005585 RLG00000010281 RLG00000010912 RLG00000030342 RLG00000034281
rosa_multiflora Rmu_sc0000096.1_g000010 Rmu_sc0002481.1_g000045 Rmu_sc0003598.1_g000009 Rmu_sc0003863.1_g000019 Rmu_sc0003973.1_g000002 Rmu_sc0004823.1_g000050 Rmu_sc0005621.1_g000007 Rmu_sc0006537.1_g000030 Rmu_sc0006608.1_g000014 Rmu_sc0008506.1_g000007 Rmu_sc0014428.1_g000001 Rmu_sc0035437.1_g000001 Rmu_ssc0000396.1_g000022
rosa_roxburghii Rroxscaffold_175G00432300 Rroxscaffold_17G00435390 Rroxscaffold_27G00446590 Rroxscaffold_29G00441820 Rroxscaffold_31G00438110 Rroxscaffold_32G00442750 Rroxscaffold_33G00439810 Rroxscaffold_37G00445160 Rroxscaffold_4G00306500 Rroxscaffold_4G00327700 Rroxscaffold_4G00332630 Rroxscaffold_52G00439360 Rroxscaffold_63G00444420 Rroxscaffold_76G00448580 Rroxscaffold_7G00156270
rosa_rugosa Rorug03G0295200
rosa_samantha Rh1BG433700 Rh1CG115400 Rh2AG676300 Rh2CG341800 Rh2DG381400 Rh3BG370100 Rh3BG370200 Rh4AG441600 Rh4BG076500 Rh4BG107400 Rh5BG005600 Rh6BG010100 Rh7BG000200
rosa_wichuraiana Rw0G003820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 4 cut(s) 63, 65, 259, 261
AciI CCGC 8 cut(s) 52, 65, 149, 179, 261, 294, 304, 361
AfiI CCNNNNNNNGG 2 cut(s) 171, 381
AflIII ACRYGT 1 cut(s) 283
AluBI AGCT 2 cut(s) 43, 122
AluI AGCT 2 cut(s) 43, 122
Alw21I GWGCWC 1 cut(s) 247
AoxI GGCC 1 cut(s) 20
ApeKI GCWGC 2 cut(s) 209, 235
AspLEI GCGC 5 cut(s) 63, 65, 235, 259, 261
AspS9I GGNCC 1 cut(s) 186
AvaII GGWCC 1 cut(s) 186
Bbv12I GWGCWC 1 cut(s) 247
BbvI GCAGC 2 cut(s) 221, 222
BccI CCATC 1 cut(s) 126
BcgI CGANNNNNNTGC 2 cut(s) 227, 261
BfaI CTAG 3 cut(s) 125, 272, 369
BfmI CTRYAG 1 cut(s) 236
BisI GCNGC 6 cut(s) 53, 66, 150, 180, 210, 236
BlsI GCNGC 6 cut(s) 54, 67, 151, 181, 211, 237
Bme18I GGWCC 1 cut(s) 186
BmgT120I GGNCC 1 cut(s) 186
BmiI GGNNCC 1 cut(s) 188
BmsI GCATC 1 cut(s) 254
BpuEI CTTGAG 1 cut(s) 92
BsaAI YACGTR 1 cut(s) 284
Bsc4I CCNNNNNNNGG 2 cut(s) 171, 381
Bse1I ACTGG 1 cut(s) 23
BseGI GGATG 3 cut(s) 137, 269, 463
BseLI CCNNNNNNNGG 2 cut(s) 171, 381
BseNI ACTGG 1 cut(s) 23
BsePI GCGCGC 2 cut(s) 61, 257
BseXI GCAGC 2 cut(s) 221, 222
BsgI GTGCAG 1 cut(s) 228
Bsh1236I CGCG 4 cut(s) 63, 65, 259, 261
BshFI GGCC 1 cut(s) 22
BsiHKAI GWGCWC 1 cut(s) 247
BslFI GGGAC 1 cut(s) 107
BslI CCNNNNNNNGG 2 cut(s) 171, 381
BsmFI GGGAC 1 cut(s) 107
BsnI GGCC 1 cut(s) 22
Bsp1286I GDGCHC 1 cut(s) 247
BspACI CCGC 8 cut(s) 52, 65, 149, 179, 261, 294, 304, 361
BspANI GGCC 1 cut(s) 22
BspFNI CGCG 4 cut(s) 63, 65, 259, 261
BspLI GGNNCC 1 cut(s) 188
BspMAI CTGCAG 1 cut(s) 240
BsrI ACTGG 1 cut(s) 23
BssHII GCGCGC 2 cut(s) 61, 257
Bst4CI ACNGT 1 cut(s) 344
BstBAI YACGTR 1 cut(s) 284
BstC8I GCNNGC 2 cut(s) 63, 259
BstEII GGTNACC 1 cut(s) 363
BstF5I GGATG 3 cut(s) 137, 269, 463
BstFNI CGCG 4 cut(s) 63, 65, 259, 261
BstHHI GCGC 5 cut(s) 63, 65, 235, 259, 261
BstMWI GCNNNNNNNGC 3 cut(s) 49, 58, 256
BstPI GGTNACC 1 cut(s) 363
BstSFI CTRYAG 1 cut(s) 236
BstUI CGCG 4 cut(s) 63, 65, 259, 261
BstV1I GCAGC 2 cut(s) 221, 222
BsuRI GGCC 1 cut(s) 22
BtsCI GGATG 3 cut(s) 137, 269, 463
Cac8I GCNNGC 2 cut(s) 63, 259
CfoI GCGC 5 cut(s) 63, 65, 235, 259, 261
Cfr13I GGNCC 1 cut(s) 186
CseI GACGC 2 cut(s) 104, 201
CviAII CATG 4 cut(s) 69, 87, 183, 290
CviJI RGCY 6 cut(s) 22, 43, 106, 122, 164, 197
CviKI_1 RGCY 6 cut(s) 22, 43, 106, 122, 164, 197
Eco47I GGWCC 1 cut(s) 186
Eco91I GGTNACC 1 cut(s) 363
EcoO65I GGTNACC 1 cut(s) 363
EcoT22I ATGCAT 1 cut(s) 408
FaeI CATG 4 cut(s) 72, 90, 186, 293
FaqI GGGAC 1 cut(s) 107
FatI CATG 4 cut(s) 68, 86, 182, 289
Fnu4HI GCNGC 6 cut(s) 53, 66, 150, 180, 210, 236
FokI GGATG 3 cut(s) 144, 276, 470
Fsp4HI GCNGC 6 cut(s) 53, 66, 150, 180, 210, 236
FspBI CTAG 3 cut(s) 125, 272, 369
GlaI GCGC 5 cut(s) 62, 64, 234, 258, 260
GluI GCNGC 6 cut(s) 53, 66, 150, 180, 210, 236
HaeIII GGCC 1 cut(s) 22
HgaI GACGC 2 cut(s) 104, 201
HhaI GCGC 5 cut(s) 63, 65, 235, 259, 261
Hin1II CATG 4 cut(s) 72, 90, 186, 293
Hin6I GCGC 5 cut(s) 61, 63, 233, 257, 259
HinP1I GCGC 5 cut(s) 61, 63, 233, 257, 259
HincII GTYRAC 1 cut(s) 309
HindII GTYRAC 1 cut(s) 309
HindIII AAGCTT 1 cut(s) 41
Hpy166II GTNNAC 2 cut(s) 309, 463
Hpy8I GTNNAC 2 cut(s) 309, 463
Hpy99I CGWCG 1 cut(s) 217
HpyAV CCTTC 4 cut(s) 96, 165, 169, 221
HpyCH4III ACNGT 1 cut(s) 344
HpyCH4IV ACGT 1 cut(s) 283
HpyCH4V TGCA 9 cut(s) 4, 83, 209, 238, 267, 279, 289, 349, 406
HpyF10VI GCNNNNNNNGC 3 cut(s) 49, 58, 256
HpySE526I ACGT 1 cut(s) 283
Hsp92II CATG 4 cut(s) 72, 90, 186, 293
HspAI GCGC 5 cut(s) 61, 63, 233, 257, 259
LpnPI CCDG 5 cut(s) 4, 39, 188, 224, 236
Lsp1109I GCAGC 2 cut(s) 221, 222
LweI GCATC 1 cut(s) 254
MaeI CTAG 3 cut(s) 125, 272, 369
MaeII ACGT 1 cut(s) 283
MaeIII GTNAC 3 cut(s) 28, 296, 363
MfeI CAATTG 1 cut(s) 5
MhlI GDGCHC 1 cut(s) 247
MluCI AATT 1 cut(s) 5
MnlI CCTC 1 cut(s) 33
Mph1103I ATGCAT 1 cut(s) 408
MseI TTAA 1 cut(s) 435
MslI CAYNNNNRTG 1 cut(s) 284
MunI CAATTG 1 cut(s) 5
MvnI CGCG 4 cut(s) 63, 65, 259, 261
MwoI GCNNNNNNNGC 3 cut(s) 49, 58, 256
NlaIII CATG 4 cut(s) 72, 90, 186, 293
NlaIV GGNNCC 1 cut(s) 188
NmeAIII GCCGAG 2 cut(s) 178, 226
NsiI ATGCAT 1 cut(s) 408
PauI GCGCGC 2 cut(s) 61, 257
PkrI GCNGC 6 cut(s) 54, 67, 151, 181, 211, 237
Ppu21I YACGTR 1 cut(s) 284
PspEI GGTNACC 1 cut(s) 363
PspN4I GGNNCC 1 cut(s) 188
PspPI GGNCC 1 cut(s) 186
PstI CTGCAG 1 cut(s) 240
PteI GCGCGC 2 cut(s) 61, 257
RseI CAYNNNNRTG 1 cut(s) 284
SaqAI TTAA 1 cut(s) 435
SatI GCNGC 6 cut(s) 53, 66, 150, 180, 210, 236
Sau96I GGNCC 1 cut(s) 186
SduI GDGCHC 1 cut(s) 247
SetI ASST 6 cut(s) 45, 124, 232, 286, 370, 432
SfaNI GCATC 1 cut(s) 254
SfcI CTRYAG 1 cut(s) 236
SinI GGWCC 1 cut(s) 186
SmiMI CAYNNNNRTG 1 cut(s) 284
SmlI CTYRAG 1 cut(s) 107
SmoI CTYRAG 1 cut(s) 107
Sse9I AATT 1 cut(s) 5
SsiI CCGC 8 cut(s) 52, 65, 149, 179, 261, 294, 304, 361
SspMI CTAG 3 cut(s) 125, 272, 369
TaaI ACNGT 1 cut(s) 344
TaiI ACGT 1 cut(s) 286
TasI AATT 1 cut(s) 5
TauI GCSGC 4 cut(s) 55, 68, 152, 182
Tru1I TTAA 1 cut(s) 435
Tru9I TTAA 1 cut(s) 435
TseI GCWGC 2 cut(s) 209, 235
TspDTI ATGAA 1 cut(s) 35
VpaK11BI GGWCC 1 cut(s) 186
XspI CTAG 3 cut(s) 125, 272, 369
Zsp2I ATGCAT 1 cut(s) 408
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.