pycom13g23120

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0000385
Physical Location & Seq
Forward (+)
20815862 .. 20817283
1422 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g23120.1

Sequence Viewer

Length: 1422 bp
ATGGCAAGTGGAGAGATGGTGTCCGGAGTCTCCGATCTAAGGGAGCGTACTGCCGAGGTCCAAGACGTTGCTAAGAGCAAGCCAAAGTTAAAGGACTTGCAAGCATCGATGGAGACCATGGAGGAGCGACTCGAGAAGGTGGAACGAACCATACTCGAGTTCGATACTCGACTTGATGAGGACGTTGTCGACAAGGAGGAAATCCAAACCATGGTGGACAATGGTAAGGATGAACTGCGTGGCTTGGTGGAAAGGCTACGAGATGAGCTCCTTGGCGCCCTCAACACCATGGCAGACAAGATGCGGAGGGAAGTCCAGGTTCACCTTGACAACATAGAGGCAAGGTTTGTGGCGCTTCAAGAAGAGATAAAAGACACAAGGGAACTTAAGGGAGATGTGGCGTTTTGTAAAGAAGCAGTCGTGAAGCAATTCGTGCAAGGCCCGAGGGAAATCAAGGCGTTGGACTCCAAGGTAATCGACTCCTTTAAACCCAAATCCTATAATGGGAAAAGGGAAGCAAAGGAGCTCGACACATTCGTGTGGAACGTGGAGCAATACTTCAAGTACCTGAAGCTTGAAGATGACGAGTCCAAAATCTCAACGGCAACCATGTTCTTAGCTGACAATGCCCTTATGTGGTGGCGTCGTCGGAGCATGGAGATTGAGCAAGGTACGTTCTCCCTCACCACTTGGGATGAATTTAAGAAAGACCTTATGTTGCACTTCTATCCCCAAAATGCCAAGTACGAAGCCAAGGAGAAACTAAGGTGGCTCAAGCAAACGGGGAGCGTCAAAGTCTATGTCAACACCTTCGTGAGTTTGTTATTCGAGGTGCCCAACATGTTAGAGGAAGACAAGCTCATGTACCTCATGAGTGGACTGCAAAATTGGGCAAAACTCGAACTACAAAGGAGACACGTGCAAACATTGTCTGATGCCATTGCCGCCGCCGAATCCTTGATTGAGTTTAAATCAAGCCACCAAGGTGATTCCAAGTCCACGAGGAAGAGGGGTAACCATGAGAAAAGTGGGGGAGAACATAAGCCGAAGGATAAGGCTGAGACAAGCAAACCGAAGGAGAAGAAAGCCGATAAGCATGACAAAAGCAAGGGTAAGTCTTGGCAACCCACTTGTTACTTATGCGACGGCCCTCACATGATGCGAGATTGCCCACAAAAGAAGGCCCTTAAGGCCATGGCTTTCAAGGAGGACAAGGCCGAGGAGAATAACGATGCAAGGATGGGATGCATCCGTCTGCTGAATGCCATCCAAACAACCCTCCCACAACCTAAGGCTCAAGTTGAGGGAGGATCATTGTTCGTCGACGTCAAGACTGGTGACAAGACAACACATGTGTTGGTGGACACGGGAGCAACCCACAACTTCATGACGTCAGAGGAAGCTACAAGGCTTAGCCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Asp_protease_2 Chromo RVT_1 Retrotrans_gag gag-asp_proteas rve

Protein Analysis

474

Amino Acids

54.32

Weight (kDa)

6.29

Isoelectric Point (pI)

34.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ty3_capsid PF19259 163 - 325 6.5e-13 Ty3 transposon capsid-like protein
Retrotrans_gag PF03732 202 - 295 2.1e-14 Retrotransposon gag protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000385)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g23713 FvH4_1g25744 FvH4_2g00261 FvH4_2g00262 FvH4_2g15681 FvH4_2g17851 FvH4_2g35550 FvH4_3g05280 FvH4_3g10531 FvH4_3g25910 FvH4_3g28953 FvH4_3g33371 FvH4_3g33536 FvH4_3g36090 FvH4_4g03471 FvH4_4g03480 FvH4_4g06701 FvH4_4g19351 FvH4_4g34281 FvH4_5g00040 FvH4_5g03811 FvH4_5g03812 FvH4_5g11822 FvH4_5g30921 FvH4_5g31701 FvH4_6g12161 FvH4_6g15222 FvH4_6g15223 FvH4_6g17701 FvH4_6g17710 FvH4_6g19301 FvH4_6g33011 FvH4_6g34501 FvH4_6g50161 FvH4_7g04111 FvH4_7g04120 FvH4_7g04121 FvH4_7g04122 FvH4_7g04123 FvH4_7g28231 FvH4_c7g00010
malus_domestica MD12G1084200.v1.1
prunus_persica Prupe.1G206200_v2.0.a1 Prupe.8G085600_v2.0.a1
pyrus_communis pycom01g11080 pycom02g20500 pycom09g18370 pycom12555g00210 pycom13g23120 pycom14g10590 pycom16g17620 pycom16g22750
rosa_chinensis RchiOBHm_Chr2g0137481 RchiOBHm_Chr6g0251961 RchiOBHm_Chr7g0185821
rosa_laevigata RLG00000005585 RLG00000010281 RLG00000010912 RLG00000030342 RLG00000034281
rosa_multiflora Rmu_sc0000096.1_g000010 Rmu_sc0002481.1_g000045 Rmu_sc0003598.1_g000009 Rmu_sc0003863.1_g000019 Rmu_sc0003973.1_g000002 Rmu_sc0004823.1_g000050 Rmu_sc0005621.1_g000007 Rmu_sc0006537.1_g000030 Rmu_sc0006608.1_g000014 Rmu_sc0008506.1_g000007 Rmu_sc0014428.1_g000001 Rmu_sc0035437.1_g000001 Rmu_ssc0000396.1_g000022
rosa_roxburghii Rroxscaffold_175G00432300 Rroxscaffold_17G00435390 Rroxscaffold_27G00446590 Rroxscaffold_29G00441820 Rroxscaffold_31G00438110 Rroxscaffold_32G00442750 Rroxscaffold_33G00439810 Rroxscaffold_37G00445160 Rroxscaffold_4G00306500 Rroxscaffold_4G00327700 Rroxscaffold_4G00332630 Rroxscaffold_52G00439360 Rroxscaffold_63G00444420 Rroxscaffold_76G00448580 Rroxscaffold_7G00156270
rosa_rugosa Rorug03G0295200
rosa_samantha Rh1BG433700 Rh1CG115400 Rh2AG676300 Rh2CG341800 Rh2DG381400 Rh3BG370100 Rh3BG370200 Rh4AG441600 Rh4BG076500 Rh4BG107400 Rh5BG005600 Rh6BG010100 Rh7BG000200
rosa_wichuraiana Rw0G003820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 1329, 1394
AccB1I GGYRCC 2 cut(s) 275, 832
AccB7I CCANNNNNTGG 1 cut(s) 211
AccI GTMKAC 2 cut(s) 189, 1323
AccIII TCCGGA 1 cut(s) 23
AciI CCGC 3 cut(s) 304, 945, 948
AclWI GGATC 1 cut(s) 1318
AcsI RAATTY 1 cut(s) 698
AcuI CTGAAG 1 cut(s) 590
AcvI CACGTG 1 cut(s) 919
AcyI GRCGYC 4 cut(s) 276, 643, 1326, 1391
AfaI GTAC 5 cut(s) 49, 566, 673, 746, 866
AfiI CCNNNNNNNGG 4 cut(s) 39, 211, 504, 636
AflII CTTAAG 2 cut(s) 386, 1187
AflIII ACRYGT 3 cut(s) 840, 916, 1351
AgsI TTSAA 4 cut(s) 359, 562, 578, 1204
AjnI CCWGG 1 cut(s) 315
AleI CACNNNNGTG 3 cut(s) 536, 812, 984
AluBI AGCT 6 cut(s) 268, 526, 574, 620, 859, 1403
AluI AGCT 6 cut(s) 268, 526, 574, 620, 859, 1403
Alw21I GWGCWC 2 cut(s) 270, 528
Alw26I GTCTC 4 cut(s) 34, 107, 907, 1055
AlwI GGATC 1 cut(s) 1318
Ama87I CYCGRG 3 cut(s) 131, 155, 442
Aor13HI TCCGGA 1 cut(s) 23
AoxI GGCC 5 cut(s) 439, 1147, 1182, 1191, 1215
ApoI RAATTY 1 cut(s) 698
ArsI GACNNNNNNTTYG 2 cut(s) 786, 818
Asp700I GAANNNNTTC 1 cut(s) 428
AspLEI GCGC 2 cut(s) 278, 355
AspS9I GGNCC 4 cut(s) 58, 440, 1148, 1183
AsuHPI GGTGA 4 cut(s) 314, 676, 998, 1349
AvaI CYCGRG 3 cut(s) 131, 155, 442
AvaII GGWCC 1 cut(s) 58
AxyI CCTNAGG 1 cut(s) 1290
BaeGI GKGCMC 1 cut(s) 837
BanI GGYRCC 2 cut(s) 275, 832
BanII GRGCYC 2 cut(s) 270, 528
BauI CACGAG 1 cut(s) 1000
BbrPI CACGTG 1 cut(s) 919
BbsI GAAGAC 1 cut(s) 858
Bbv12I GWGCWC 2 cut(s) 270, 528
BccI CCATC 4 cut(s) 10, 103, 1234, 1274
BceAI ACGGC 2 cut(s) 618, 1162
BciT130I CCWGG 1 cut(s) 317
BcoDI GTCTC 4 cut(s) 34, 107, 907, 1055
BfoI RGCGCY 2 cut(s) 279, 356
BfrI CTTAAG 2 cut(s) 386, 1187
BglI GCCNNNNNGGC 1 cut(s) 1190
BisI GCNGC 2 cut(s) 945, 948
BlpI GCTNAGC 1 cut(s) 1412
BlsI GCNGC 2 cut(s) 946, 949
Bme1390I CCNGG 1 cut(s) 317
Bme18I GGWCC 1 cut(s) 58
BmeT110I CYCGRG 3 cut(s) 131, 155, 442
BmgT120I GGNCC 4 cut(s) 58, 440, 1148, 1183
BmiI GGNNCC 2 cut(s) 277, 834
BmrFI CCNGG 1 cut(s) 317
BmsI GCATC 7 cut(s) 113, 291, 925, 1149, 1222, 1235, 1257
BpiI GAAGAC 1 cut(s) 858
BplI GAGNNNNNCTC 2 cut(s) 252, 284
Bpu1102I GCTNAGC 1 cut(s) 1412
BpuEI CTTGAG 2 cut(s) 758, 1281
Bsa29I ATCGAT 1 cut(s) 107
BsaAI YACGTR 1 cut(s) 919
BsaHI GRCGYC 4 cut(s) 276, 643, 1326, 1391
BsaI GGTCTC 1 cut(s) 107
BsaWI WCCGGW 1 cut(s) 23
BsaXI ACNNNNNCTCC 1 cut(s) 33
Bsc4I CCNNNNNNNGG 4 cut(s) 39, 211, 504, 636
Bse1I ACTGG 1 cut(s) 1339
Bse21I CCTNAGG 1 cut(s) 1290
Bse3DI GCAATG 1 cut(s) 939
BseAI TCCGGA 1 cut(s) 23
BseBI CCWGG 1 cut(s) 317
BseCI ATCGAT 1 cut(s) 107
BseGI GGATG 6 cut(s) 235, 700, 1245, 1248, 1250, 1266
BseLI CCNNNNNNNGG 4 cut(s) 39, 211, 504, 636
BseMI GCAATG 1 cut(s) 939
BseMII CTCAG 1 cut(s) 1050
BseNI ACTGG 1 cut(s) 1339
BseRI GAGGAG 2 cut(s) 137, 1235
BseSI GKGCMC 1 cut(s) 837
BshFI GGCC 5 cut(s) 441, 1149, 1184, 1193, 1217
BshNI GGYRCC 2 cut(s) 275, 832
BshVI ATCGAT 1 cut(s) 107
BsiHKAI GWGCWC 2 cut(s) 270, 528
BsiHKCI CYCGRG 3 cut(s) 131, 155, 442
BsiSI CCGG 1 cut(s) 24
BslI CCNNNNNNNGG 4 cut(s) 39, 211, 504, 636
BsmAI GTCTC 4 cut(s) 34, 107, 907, 1055
BsmI GAATGC 1 cut(s) 1267
BsnI GGCC 5 cut(s) 441, 1149, 1184, 1193, 1217
Bso31I GGTCTC 1 cut(s) 107
BsoBI CYCGRG 3 cut(s) 131, 155, 442
Bsp1286I GDGCHC 3 cut(s) 270, 528, 837
Bsp13I TCCGGA 1 cut(s) 23
Bsp143I GATC 2 cut(s) 34, 1310
Bsp1720I GCTNAGC 1 cut(s) 1412
Bsp19I CCATGG 4 cut(s) 117, 210, 288, 1194
BspACI CCGC 3 cut(s) 304, 945, 948
BspANI GGCC 5 cut(s) 441, 1149, 1184, 1193, 1217
BspCNI CTCAG 1 cut(s) 1051
BspDI ATCGAT 1 cut(s) 107
BspEI TCCGGA 1 cut(s) 23
BspHI TCATGA 2 cut(s) 870, 1386
BspLI GGNNCC 2 cut(s) 277, 834
BspPI GGATC 1 cut(s) 1318
BspT107I GGYRCC 2 cut(s) 275, 832
BspTI CTTAAG 2 cut(s) 386, 1187
BspTNI GGTCTC 1 cut(s) 107
BsrDI GCAATG 1 cut(s) 939
BsrI ACTGG 1 cut(s) 1339
BssMI GATC 2 cut(s) 34, 1310
BssNI GRCGYC 4 cut(s) 276, 643, 1326, 1391
BssSI CACGAG 1 cut(s) 1000
BssT1I CCWWGG 8 cut(s) 117, 210, 271, 288, 468, 753, 982, 1194
Bst2BI CACGAG 1 cut(s) 1000
Bst2UI CCWGG 1 cut(s) 317
Bst6I CTCTTC 2 cut(s) 357, 1001
BstACI GRCGYC 4 cut(s) 276, 643, 1326, 1391
BstAFI CTTAAG 2 cut(s) 386, 1187
BstAPI GCANNNNNTGC 1 cut(s) 433
BstBAI YACGTR 1 cut(s) 919
BstC8I GCNNGC 2 cut(s) 80, 102
BstDEI CTNAG 7 cut(s) 38, 72, 616, 764, 1059, 1290, 1412
BstDSI CCRYGG 4 cut(s) 117, 210, 288, 1194
BstEII GGTNACC 1 cut(s) 1013
BstF5I GGATG 6 cut(s) 235, 700, 1245, 1248, 1250, 1266
BstH2I RGCGCY 2 cut(s) 279, 356
BstHHI GCGC 2 cut(s) 278, 355
BstKTI GATC 2 cut(s) 37, 1313
BstMAI GTCTC 4 cut(s) 34, 107, 907, 1055
BstMBI GATC 2 cut(s) 34, 1310
BstMWI GCNNNNNNNGC 4 cut(s) 433, 626, 944, 1190
BstNI CCWGG 1 cut(s) 317
BstNSI RCATGY 2 cut(s) 844, 1355
BstPI GGTNACC 1 cut(s) 1013
BstSCI CCNGG 1 cut(s) 315
BstSLI GKGCMC 1 cut(s) 837
BstV2I GAAGAC 1 cut(s) 858
Bsu15I ATCGAT 1 cut(s) 107
Bsu36I CCTNAGG 1 cut(s) 1290
BsuRI GGCC 5 cut(s) 441, 1149, 1184, 1193, 1217
BsuTUI ATCGAT 1 cut(s) 107
BtgI CCRYGG 4 cut(s) 117, 210, 288, 1194
BtsCI GGATG 6 cut(s) 235, 700, 1245, 1248, 1250, 1266
Cac8I GCNNGC 2 cut(s) 80, 102
CciI TCATGA 2 cut(s) 870, 1386
CfoI GCGC 2 cut(s) 278, 355
Cfr13I GGNCC 4 cut(s) 58, 440, 1148, 1183
ClaI ATCGAT 1 cut(s) 107
CseI GACGC 2 cut(s) 632, 778
Csp6I GTAC 5 cut(s) 48, 565, 672, 745, 865
CspCI CAANNNNNGTGG 2 cut(s) 330, 365
CviQI GTAC 5 cut(s) 48, 565, 672, 745, 865
DdeI CTNAG 7 cut(s) 38, 72, 616, 764, 1059, 1290, 1412
DinI GGCGCC 1 cut(s) 277
DpnI GATC 2 cut(s) 36, 1312
DpnII GATC 2 cut(s) 34, 1310
DraI TTTAAA 2 cut(s) 487, 970
Eam1104I CTCTTC 2 cut(s) 357, 1001
EarI CTCTTC 2 cut(s) 357, 1001
Ecl136II GAGCTC 2 cut(s) 268, 526
Eco130I CCWWGG 8 cut(s) 117, 210, 271, 288, 468, 753, 982, 1194
Eco24I GRGCYC 2 cut(s) 270, 528
Eco31I GGTCTC 1 cut(s) 107
Eco47I GGWCC 1 cut(s) 58
Eco53kI GAGCTC 2 cut(s) 268, 526
Eco57I CTGAAG 1 cut(s) 590
Eco72I CACGTG 1 cut(s) 919
Eco81I CCTNAGG 1 cut(s) 1290
Eco88I CYCGRG 3 cut(s) 131, 155, 442
Eco91I GGTNACC 1 cut(s) 1013
EcoICRI GAGCTC 2 cut(s) 268, 526
EcoO109I RGGNCCY 1 cut(s) 1183
EcoO65I GGTNACC 1 cut(s) 1013
EcoRII CCWGG 1 cut(s) 315
EcoT14I CCWWGG 8 cut(s) 117, 210, 271, 288, 468, 753, 982, 1194
EcoT22I ATGCAT 1 cut(s) 1250
EcoT38I GRGCYC 2 cut(s) 270, 528
EgeI GGCGCC 1 cut(s) 277
EheI GGCGCC 1 cut(s) 277
ErhI CCWWGG 8 cut(s) 117, 210, 271, 288, 468, 753, 982, 1194
FblI GTMKAC 2 cut(s) 189, 1323
Fnu4HI GCNGC 2 cut(s) 945, 948
FokI GGATG 6 cut(s) 242, 707, 1235, 1252, 1253, 1257
FriOI GRGCYC 2 cut(s) 270, 528
Fsp4HI GCNGC 2 cut(s) 945, 948
GlaI GCGC 2 cut(s) 277, 354
GluI GCNGC 2 cut(s) 945, 948
HaeII RGCGCY 2 cut(s) 279, 356
HaeIII GGCC 5 cut(s) 441, 1149, 1184, 1193, 1217
HapII CCGG 1 cut(s) 24
HgaI GACGC 2 cut(s) 632, 778
HhaI GCGC 2 cut(s) 278, 355
Hin1I GRCGYC 4 cut(s) 276, 643, 1326, 1391
Hin6I GCGC 2 cut(s) 276, 353
HinP1I GCGC 2 cut(s) 276, 353
HincII GTYRAC 3 cut(s) 190, 805, 1324
HindII GTYRAC 3 cut(s) 190, 805, 1324
HindIII AAGCTT 1 cut(s) 572
HinfI GANTC 7 cut(s) 27, 129, 464, 479, 587, 953, 989
HpaII CCGG 1 cut(s) 24
HphI GGTGA 4 cut(s) 314, 676, 998, 1349
Hpy166II GTNNAC 8 cut(s) 190, 217, 322, 805, 878, 999, 1324, 1363
Hpy188I TCNGA 5 cut(s) 34, 651, 934, 1396, 1421
Hpy188III TCNNGA 8 cut(s) 24, 133, 359, 421, 814, 871, 1330, 1387
Hpy8I GTNNAC 8 cut(s) 190, 217, 322, 805, 878, 999, 1324, 1363
Hpy99I CGWCG 5 cut(s) 648, 651, 1148, 1325, 1328
HpyAV CCTTC 5 cut(s) 130, 820, 1042, 1069, 1174
HpyCH4IV ACGT 7 cut(s) 66, 183, 546, 674, 918, 1326, 1391
HpyCH4V TGCA 7 cut(s) 100, 436, 721, 883, 922, 1235, 1248
HpyF10VI GCNNNNNNNGC 4 cut(s) 433, 626, 944, 1190
HpyF3I CTNAG 7 cut(s) 38, 72, 616, 764, 1059, 1290, 1412
HpySE526I ACGT 7 cut(s) 66, 183, 546, 674, 918, 1326, 1391
Hsp92I GRCGYC 4 cut(s) 276, 643, 1326, 1391
HspAI GCGC 2 cut(s) 276, 353
KasI GGCGCC 1 cut(s) 275
Kpn2I TCCGGA 1 cut(s) 23
Kzo9I GATC 2 cut(s) 34, 1310
LmnI GCTCC 8 cut(s) 43, 124, 273, 523, 550, 651, 786, 1370
LpnPI CCDG 5 cut(s) 37, 302, 329, 581, 1320
LweI GCATC 7 cut(s) 113, 291, 925, 1149, 1222, 1235, 1257
MaeII ACGT 7 cut(s) 66, 183, 546, 674, 918, 1326, 1391
MaeIII GTNAC 3 cut(s) 1013, 1133, 1337
MalI GATC 2 cut(s) 36, 1312
MboI GATC 2 cut(s) 34, 1310
MboII GAAGA 5 cut(s) 374, 590, 863, 1018, 1093
MhlI GDGCHC 3 cut(s) 270, 528, 837
MluCI AATT 3 cut(s) 428, 698, 886
Mly113I GGCGCC 1 cut(s) 276
MlyI GAGTC 5 cut(s) 36, 123, 458, 473, 596
MmeI TCCRAC 2 cut(s) 441, 629
Mph1103I ATGCAT 1 cut(s) 1250
MroI TCCGGA 1 cut(s) 23
MroXI GAANNNNTTC 1 cut(s) 428
MseI TTAA 6 cut(s) 89, 387, 486, 702, 969, 1188
MslI CAYNNNNRTG 4 cut(s) 536, 538, 812, 984
MspCI CTTAAG 2 cut(s) 386, 1187
MspI CCGG 1 cut(s) 24
MspR9I CCNGG 1 cut(s) 317
Mva1269I GAATGC 1 cut(s) 1267
MvaI CCWGG 1 cut(s) 317
MwoI GCNNNNNNNGC 4 cut(s) 433, 626, 944, 1190
NarI GGCGCC 1 cut(s) 276
NcoI CCATGG 4 cut(s) 117, 210, 288, 1194
NdeII GATC 2 cut(s) 34, 1310
NlaIV GGNNCC 2 cut(s) 277, 834
NmeAIII GCCGAG 2 cut(s) 79, 1243
NmuCI GTSAC 1 cut(s) 1337
NsiI ATGCAT 1 cut(s) 1250
NspI RCATGY 2 cut(s) 844, 1355
OliI CACNNNNGTG 3 cut(s) 536, 812, 984
PaeR7I CTCGAG 2 cut(s) 131, 155
PagI TCATGA 2 cut(s) 870, 1386
PciI ACATGT 2 cut(s) 840, 1351
PcsI WCGNNNNNNNCGW 2 cut(s) 534, 543
PctI GAATGC 1 cut(s) 1267
PdmI GAANNNNTTC 1 cut(s) 428
PfeI GAWTC 2 cut(s) 953, 989
PflFI GACNNNGTC 1 cut(s) 185
PflMI CCANNNNNTGG 1 cut(s) 211
PkrI GCNGC 2 cut(s) 946, 949
PleI GAGTC 5 cut(s) 35, 123, 458, 473, 595
PluTI GGCGCC 1 cut(s) 279
PmaCI CACGTG 1 cut(s) 919
PmlI CACGTG 1 cut(s) 919
PpsI GAGTC 5 cut(s) 35, 123, 458, 473, 595
Ppu21I YACGTR 1 cut(s) 919
PscI ACATGT 2 cut(s) 840, 1351
Psp124BI GAGCTC 2 cut(s) 270, 528
Psp6I CCWGG 1 cut(s) 315
PspCI CACGTG 1 cut(s) 919
PspEI GGTNACC 1 cut(s) 1013
PspGI CCWGG 1 cut(s) 315
PspN4I GGNNCC 2 cut(s) 277, 834
PspPI GGNCC 4 cut(s) 58, 440, 1148, 1183
PspXI VCTCGAGB 1 cut(s) 155
PsrI GAACNNNNNNTAC 2 cut(s) 135, 167
PsyI GACNNNGTC 1 cut(s) 185
RsaI GTAC 5 cut(s) 49, 566, 673, 746, 866
RsaNI GTAC 5 cut(s) 48, 565, 672, 745, 865
RseI CAYNNNNRTG 4 cut(s) 536, 538, 812, 984
SacI GAGCTC 2 cut(s) 270, 528
SalI GTCGAC 2 cut(s) 188, 1322
SaqAI TTAA 6 cut(s) 89, 387, 486, 702, 969, 1188
SatI GCNGC 2 cut(s) 945, 948
Sau3AI GATC 2 cut(s) 34, 1310
Sau96I GGNCC 4 cut(s) 58, 440, 1148, 1183
SchI GAGTC 5 cut(s) 36, 123, 458, 473, 596
ScrFI CCNGG 1 cut(s) 317
SduI GDGCHC 3 cut(s) 270, 528, 837
SfaNI GCATC 7 cut(s) 113, 291, 925, 1149, 1222, 1235, 1257
SfiI GGCCNNNNNGGCC 1 cut(s) 1190
SfoI GGCGCC 1 cut(s) 277
Sfr274I CTCGAG 2 cut(s) 131, 155
SgrDI CGTCGACG 1 cut(s) 1322
SinI GGWCC 1 cut(s) 58
SlaI CTCGAG 2 cut(s) 131, 155
SmiMI CAYNNNNRTG 4 cut(s) 536, 538, 812, 984
SmlI CTYRAG 6 cut(s) 131, 155, 386, 773, 1187, 1296
SmoI CTYRAG 6 cut(s) 131, 155, 386, 773, 1187, 1296
Sse9I AATT 3 cut(s) 428, 698, 886
SsiI CCGC 3 cut(s) 304, 945, 948
SspDI GGCGCC 1 cut(s) 275
SstI GAGCTC 2 cut(s) 270, 528
StyD4I CCNGG 1 cut(s) 315
StyI CCWWGG 8 cut(s) 117, 210, 271, 288, 468, 753, 982, 1194
TaiI ACGT 7 cut(s) 69, 186, 549, 677, 921, 1329, 1394
TasI AATT 3 cut(s) 428, 698, 886
TauI GCSGC 2 cut(s) 947, 950
TfiI GAWTC 2 cut(s) 953, 989
Tru1I TTAA 6 cut(s) 89, 387, 486, 702, 969, 1188
Tru9I TTAA 6 cut(s) 89, 387, 486, 702, 969, 1188
TseFI GTSAC 1 cut(s) 1337
Tsp45I GTSAC 1 cut(s) 1337
TspDTI ATGAA 3 cut(s) 246, 711, 1375
TspGWI ACGGA 1 cut(s) 1241
Tth111I GACNNNGTC 1 cut(s) 185
Van91I CCANNNNNTGG 1 cut(s) 211
Vha464I CTTAAG 2 cut(s) 386, 1187
VpaK11BI GGWCC 1 cut(s) 58
XapI RAATTY 1 cut(s) 698
XceI RCATGY 2 cut(s) 844, 1355
XcmI CCANNNNNNNNNTGG 1 cut(s) 1025
XhoI CTCGAG 2 cut(s) 131, 155
XmiI GTMKAC 2 cut(s) 189, 1323
XmnI GAANNNNTTC 1 cut(s) 428
ZraI GACGTC 2 cut(s) 1327, 1392
Zsp2I ATGCAT 1 cut(s) 1250
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.