FvH4_2g15681
ERF Family

DNA RNA polymerases superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000385
Physical Location & Seq
Reverse (-)
13760435 .. 13762129
1695 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g15681.t1

Sequence Viewer

Length: 1044 bp
ATGGCGAAGATTCGCGAGGAGTTCATGGGGGAACTCGCCAAAATGCGTCAAGTCCACGAGAAGGAGTTAAATGACACGCTTGCACGCATTGAGGAGATGCATGGGGACTTGGCCCTATGCAAGCGCTCATTGGCGACGGGAGCTGACACCAACGGTATTATGGAGGCTAAGCGCATTGAGGTGCTAAAGCCTAAGAGTTTCGGGGGATTGTGCAACGCTCGTGAAGTGGATAACTTCTTATGGGGGCTAGACCAATACTTTAGAGCCGTAGGCATCACCGAGGAGGATGCCAAGATTAAGACCACAGCTCTCTACCTCACTGATACTGCCATGTTATGGTGGAGGAGAATGCGAGGAAACGTCGAAAAATGTACGTGCACTATTAGTACTTTTGATGACTTTACAAAGGAGCTTAAAAGACAATTTTATCCTGAGAATGCCGAGGATAAGGCAAGAGCTCGCTTGCGAAAGCTCAAGCACTCAAGGGGAAACAATGGAGGAGGCTCCATCAAAGCGGTCAATTCACCAACTCGACCCATTCATGGTGTAGTTCGAGGAGTCAAGACAAGCGTGGGAGAATGGTGTGGGAACTTAGACTTCTCGATTGTTCCAATGGATGACTTCAAAGTCGTCTTGAGGTTGGAATTCCACGATCAAGTCAAGGCAATCTCGGTGCCATTCGCTAATAGCTTGTGCATCACGGAAGGCGACAAAGCTTGTGTAGTGCCATCAACTAGAGGCACAAAGCAAGACTTGAATGTGTTGTTAGTGTTACAATTCAAGAAAGGCATTAAGAGGGAAGAGGAGAGCTACTTGGCCATCCTTAGTGAGTTTGACGATGATGAGCCAAGACCTCAAGATGATATGTCCAAGGAGGTAGCAGCAGTTCTTGAGGAATTCAAAGATGTTTCACCAGCCAAGCTGCCTAAGAAACTACCCCCAAGGAGAGAAATTGACCATGAGATAGAGGGCCAGTTTGGCTTTGCGTTTTCGGGAAAAAAGCGGTGTATATTTACCGCTGCTAGAACTTCACGCGTTTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Chromo RVT_1 Retrotrans_gag gag-asp_proteas

Protein Analysis

348

Amino Acids

39.34

Weight (kDa)

8.51

Isoelectric Point (pI)

44.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Retrotrans_gag PF03732 103 - 160 1.2e-06 Retrotransposon gag protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000385)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g23713 FvH4_1g25744 FvH4_2g00261 FvH4_2g00262 FvH4_2g15681 FvH4_2g17851 FvH4_2g35550 FvH4_3g05280 FvH4_3g10531 FvH4_3g25910 FvH4_3g28953 FvH4_3g33371 FvH4_3g33536 FvH4_3g36090 FvH4_4g03471 FvH4_4g03480 FvH4_4g06701 FvH4_4g19351 FvH4_4g34281 FvH4_5g00040 FvH4_5g03811 FvH4_5g03812 FvH4_5g11822 FvH4_5g30921 FvH4_5g31701 FvH4_6g12161 FvH4_6g15222 FvH4_6g15223 FvH4_6g17701 FvH4_6g17710 FvH4_6g19301 FvH4_6g33011 FvH4_6g34501 FvH4_6g50161 FvH4_7g04111 FvH4_7g04120 FvH4_7g04121 FvH4_7g04122 FvH4_7g04123 FvH4_7g28231 FvH4_c7g00010
malus_domestica MD12G1084200.v1.1
prunus_persica Prupe.1G206200_v2.0.a1 Prupe.8G085600_v2.0.a1
pyrus_communis pycom01g11080 pycom02g20500 pycom09g18370 pycom12555g00210 pycom13g23120 pycom14g10590 pycom16g17620 pycom16g22750
rosa_chinensis RchiOBHm_Chr2g0137481 RchiOBHm_Chr6g0251961 RchiOBHm_Chr7g0185821
rosa_laevigata RLG00000005585 RLG00000010281 RLG00000010912 RLG00000030342 RLG00000034281
rosa_multiflora Rmu_sc0000096.1_g000010 Rmu_sc0002481.1_g000045 Rmu_sc0003598.1_g000009 Rmu_sc0003863.1_g000019 Rmu_sc0003973.1_g000002 Rmu_sc0004823.1_g000050 Rmu_sc0005621.1_g000007 Rmu_sc0006537.1_g000030 Rmu_sc0006608.1_g000014 Rmu_sc0008506.1_g000007 Rmu_sc0014428.1_g000001 Rmu_sc0035437.1_g000001 Rmu_ssc0000396.1_g000022
rosa_roxburghii Rroxscaffold_175G00432300 Rroxscaffold_17G00435390 Rroxscaffold_27G00446590 Rroxscaffold_29G00441820 Rroxscaffold_31G00438110 Rroxscaffold_32G00442750 Rroxscaffold_33G00439810 Rroxscaffold_37G00445160 Rroxscaffold_4G00306500 Rroxscaffold_4G00327700 Rroxscaffold_4G00332630 Rroxscaffold_52G00439360 Rroxscaffold_63G00444420 Rroxscaffold_76G00448580 Rroxscaffold_7G00156270
rosa_rugosa Rorug03G0295200
rosa_samantha Rh1BG433700 Rh1CG115400 Rh2AG676300 Rh2CG341800 Rh2DG381400 Rh3BG370100 Rh3BG370200 Rh4AG441600 Rh4BG076500 Rh4BG107400 Rh5BG005600 Rh6BG010100 Rh7BG000200
rosa_wichuraiana Rw0G003820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 626
AccB1I GGYRCC 1 cut(s) 673
AccB7I CCANNNNNTGG 1 cut(s) 336
AccII CGCG 2 cut(s) 15, 1035
AciI CCGC 3 cut(s) 515, 1003, 1017
AcoI YGGCCR 1 cut(s) 816
AcsI RAATTY 2 cut(s) 644, 896
AfaI GTAC 2 cut(s) 373, 388
AfeI AGCGCT 1 cut(s) 125
AfiI CCNNNNNNNGG 3 cut(s) 61, 336, 542
AflIII ACRYGT 1 cut(s) 1033
AgsI TTSAA 4 cut(s) 625, 757, 781, 901
AluBI AGCT 9 cut(s) 143, 308, 412, 458, 472, 690, 716, 810, 922
AluI AGCT 9 cut(s) 143, 308, 412, 458, 472, 690, 716, 810, 922
Alw21I GWGCWC 2 cut(s) 380, 460
Alw44I GTGCAC 1 cut(s) 376
Aor51HI AGCGCT 1 cut(s) 125
AoxI GGCC 3 cut(s) 111, 816, 970
ApaLI GTGCAC 1 cut(s) 376
ApeKI GCWGC 3 cut(s) 881, 922, 1019
ApoI RAATTY 2 cut(s) 644, 896
AspLEI GCGC 2 cut(s) 126, 174
AspS9I GGNCC 2 cut(s) 112, 970
AsuHPI GGTGA 3 cut(s) 268, 516, 903
BaeGI GKGCMC 1 cut(s) 380
BalI TGGCCA 1 cut(s) 818
BanI GGYRCC 1 cut(s) 673
BanII GRGCYC 1 cut(s) 460
BauI CACGAG 2 cut(s) 56, 219
Bbv12I GWGCWC 2 cut(s) 380, 460
BbvI GCAGC 3 cut(s) 893, 909, 1006
BccI CCATC 3 cut(s) 515, 736, 827
BceAI ACGGC 1 cut(s) 251
BcgI CGANNNNNNTGC 2 cut(s) 269, 303
BfaI CTAG 3 cut(s) 248, 735, 1023
BfoI RGCGCY 1 cut(s) 127
BglI GCCNNNNNGGC 1 cut(s) 978
BisI GCNGC 3 cut(s) 882, 923, 1020
BlpI GCTNAGC 1 cut(s) 168
BlsI GCNGC 3 cut(s) 883, 924, 1021
BmcAI AGTACT 1 cut(s) 388
BmgT120I GGNCC 2 cut(s) 112, 970
BmiI GGNNCC 2 cut(s) 505, 675
BmsI GCATC 4 cut(s) 87, 277, 282, 705
Bpu1102I GCTNAGC 1 cut(s) 168
BpuEI CTTGAG 5 cut(s) 458, 466, 655, 840, 911
BsaAI YACGTR 1 cut(s) 375
BsaJI CCNNGG 4 cut(s) 279, 441, 870, 941
Bsc4I CCNNNNNNNGG 3 cut(s) 61, 336, 542
Bse1I ACTGG 1 cut(s) 973
BseDI CCNNGG 4 cut(s) 279, 441, 870, 941
BseGI GGATG 3 cut(s) 292, 622, 819
BseLI CCNNNNNNNGG 3 cut(s) 61, 336, 542
BseMII CTCAG 1 cut(s) 423
BseNI ACTGG 1 cut(s) 973
BseRI GAGGAG 7 cut(s) 32, 107, 296, 358, 513, 570, 818
BseSI GKGCMC 1 cut(s) 380
BseXI GCAGC 3 cut(s) 893, 909, 1006
Bsh1236I CGCG 2 cut(s) 15, 1035
BshFI GGCC 3 cut(s) 113, 818, 972
BshNI GGYRCC 1 cut(s) 673
BsiHKAI GWGCWC 2 cut(s) 380, 460
BslFI GGGAC 1 cut(s) 119
BslI CCNNNNNNNGG 3 cut(s) 61, 336, 542
BsmFI GGGAC 1 cut(s) 119
BsmI GAATGC 2 cut(s) 354, 442
BsnI GGCC 3 cut(s) 113, 818, 972
Bsp1286I GDGCHC 2 cut(s) 380, 460
Bsp143I GATC 1 cut(s) 652
Bsp1720I GCTNAGC 1 cut(s) 168
Bsp68I TCGCGA 1 cut(s) 15
BspACI CCGC 3 cut(s) 515, 1003, 1017
BspANI GGCC 3 cut(s) 113, 818, 972
BspCNI CTCAG 1 cut(s) 424
BspFNI CGCG 2 cut(s) 15, 1035
BspLI GGNNCC 2 cut(s) 505, 675
BspT107I GGYRCC 1 cut(s) 673
BsrI ACTGG 1 cut(s) 973
BssECI CCNNGG 4 cut(s) 279, 441, 870, 941
BssMI GATC 1 cut(s) 652
BssSI CACGAG 2 cut(s) 56, 219
BssT1I CCWWGG 2 cut(s) 870, 941
Bst2BI CACGAG 2 cut(s) 56, 219
Bst4CI ACNGT 1 cut(s) 155
Bst6I CTCTTC 1 cut(s) 795
BstBAI YACGTR 1 cut(s) 375
BstC8I GCNNGC 5 cut(s) 81, 85, 122, 460, 464
BstDEI CTNAG 6 cut(s) 168, 192, 432, 592, 824, 927
BstF5I GGATG 3 cut(s) 292, 622, 819
BstFNI CGCG 2 cut(s) 15, 1035
BstH2I RGCGCY 1 cut(s) 127
BstHHI GCGC 2 cut(s) 126, 174
BstKTI GATC 1 cut(s) 655
BstMBI GATC 1 cut(s) 652
BstMWI GCNNNNNNNGC 2 cut(s) 140, 978
BstSLI GKGCMC 1 cut(s) 380
BstUI CGCG 2 cut(s) 15, 1035
BstV1I GCAGC 3 cut(s) 893, 909, 1006
BsuRI GGCC 3 cut(s) 113, 818, 972
BtsCI GGATG 3 cut(s) 292, 622, 819
BtsIMutI CAGTG 1 cut(s) 318
BtuMI TCGCGA 1 cut(s) 15
Cac8I GCNNGC 5 cut(s) 81, 85, 122, 460, 464
CfoI GCGC 2 cut(s) 126, 174
Cfr13I GGNCC 2 cut(s) 112, 970
CseI GACGC 1 cut(s) 35
Csp6I GTAC 2 cut(s) 372, 387
CviAII CATG 5 cut(s) 25, 101, 331, 542, 959
CviQI GTAC 2 cut(s) 372, 387
DdeI CTNAG 6 cut(s) 168, 192, 432, 592, 824, 927
DpnI GATC 1 cut(s) 654
DpnII GATC 1 cut(s) 652
DrdI GACNNNNNNGTC 1 cut(s) 626
DseDI GACNNNNNNGTC 1 cut(s) 626
EaeI YGGCCR 1 cut(s) 816
Eam1104I CTCTTC 1 cut(s) 795
EarI CTCTTC 1 cut(s) 795
Ecl136II GAGCTC 1 cut(s) 458
Eco130I CCWWGG 2 cut(s) 870, 941
Eco24I GRGCYC 1 cut(s) 460
Eco47III AGCGCT 1 cut(s) 125
Eco53kI GAGCTC 1 cut(s) 458
EcoICRI GAGCTC 1 cut(s) 458
EcoRI GAATTC 2 cut(s) 644, 896
EcoT14I CCWWGG 2 cut(s) 870, 941
EcoT22I ATGCAT 1 cut(s) 102
EcoT38I GRGCYC 1 cut(s) 460
ErhI CCWWGG 2 cut(s) 870, 941
FaeI CATG 5 cut(s) 28, 104, 334, 545, 962
FalI AAGNNNNNCTT 2 cut(s) 737, 769
FaqI GGGAC 1 cut(s) 119
FatI CATG 5 cut(s) 24, 100, 330, 541, 958
Fnu4HI GCNGC 3 cut(s) 882, 923, 1020
FokI GGATG 3 cut(s) 299, 629, 806
FriOI GRGCYC 1 cut(s) 460
Fsp4HI GCNGC 3 cut(s) 882, 923, 1020
FspBI CTAG 3 cut(s) 248, 735, 1023
GlaI GCGC 2 cut(s) 125, 173
GluI GCNGC 3 cut(s) 882, 923, 1020
HaeII RGCGCY 1 cut(s) 127
HaeIII GGCC 3 cut(s) 113, 818, 972
HgaI GACGC 1 cut(s) 35
HhaI GCGC 2 cut(s) 126, 174
Hin1II CATG 5 cut(s) 28, 104, 334, 545, 962
Hin6I GCGC 2 cut(s) 124, 172
HinP1I GCGC 2 cut(s) 124, 172
HindIII AAGCTT 1 cut(s) 714
HinfI GANTC 2 cut(s) 10, 558
HphI GGTGA 3 cut(s) 268, 516, 903
Hpy166II GTNNAC 2 cut(s) 55, 378
Hpy8I GTNNAC 2 cut(s) 55, 378
Hpy99I CGWCG 2 cut(s) 139, 365
HpyAV CCTTC 2 cut(s) 55, 698
HpyCH4III ACNGT 1 cut(s) 155
HpyCH4IV ACGT 2 cut(s) 360, 374
HpyCH4V TGCA 6 cut(s) 83, 100, 120, 213, 378, 696
HpyF10VI GCNNNNNNNGC 2 cut(s) 140, 978
HpyF3I CTNAG 6 cut(s) 168, 192, 432, 592, 824, 927
HpySE526I ACGT 2 cut(s) 360, 374
Hsp92II CATG 5 cut(s) 28, 104, 334, 545, 962
HspAI GCGC 2 cut(s) 124, 172
Kzo9I GATC 1 cut(s) 652
LmnI GCTCC 3 cut(s) 140, 409, 509
LpnPI CCDG 3 cut(s) 444, 927, 986
Lsp1109I GCAGC 3 cut(s) 893, 909, 1006
LweI GCATC 4 cut(s) 87, 277, 282, 705
MaeI CTAG 3 cut(s) 248, 735, 1023
MaeII ACGT 2 cut(s) 360, 374
MaeIII GTNAC 1 cut(s) 771
MalI GATC 1 cut(s) 654
MboI GATC 1 cut(s) 652
MboII GAAGA 2 cut(s) 19, 812
MhlI GDGCHC 2 cut(s) 380, 460
MlsI TGGCCA 1 cut(s) 818
MluCI AATT 6 cut(s) 422, 520, 644, 776, 896, 951
MluI ACGCGT 1 cut(s) 1033
MluNI TGGCCA 1 cut(s) 818
MlyI GAGTC 1 cut(s) 567
MmeI TCCRAC 1 cut(s) 621
Mox20I TGGCCA 1 cut(s) 818
Mph1103I ATGCAT 1 cut(s) 102
MscI TGGCCA 1 cut(s) 818
MseI TTAA 4 cut(s) 68, 297, 414, 792
MslI CAYNNNNRTG 1 cut(s) 179
Msp20I TGGCCA 1 cut(s) 818
MspA1I CMGCKG 1 cut(s) 1019
Mva1269I GAATGC 2 cut(s) 354, 442
MvnI CGCG 2 cut(s) 15, 1035
MwoI GCNNNNNNNGC 2 cut(s) 140, 978
NdeII GATC 1 cut(s) 652
NlaIII CATG 5 cut(s) 28, 104, 334, 545, 962
NlaIV GGNNCC 2 cut(s) 505, 675
NmeAIII GCCGAG 1 cut(s) 466
NruI TCGCGA 1 cut(s) 15
NsiI ATGCAT 1 cut(s) 102
PctI GAATGC 2 cut(s) 354, 442
PfeI GAWTC 1 cut(s) 10
PflMI CCANNNNNTGG 1 cut(s) 336
PkrI GCNGC 3 cut(s) 883, 924, 1021
PleI GAGTC 1 cut(s) 566
PpsI GAGTC 1 cut(s) 566
Ppu21I YACGTR 1 cut(s) 375
Psp124BI GAGCTC 1 cut(s) 460
PspN4I GGNNCC 2 cut(s) 505, 675
PspPI GGNCC 2 cut(s) 112, 970
PsrI GAACNNNNNNTAC 2 cut(s) 870, 902
RruI TCGCGA 1 cut(s) 15
RsaI GTAC 2 cut(s) 373, 388
RsaNI GTAC 2 cut(s) 372, 387
RseI CAYNNNNRTG 1 cut(s) 179
SacI GAGCTC 1 cut(s) 460
SaqAI TTAA 4 cut(s) 68, 297, 414, 792
SatI GCNGC 3 cut(s) 882, 923, 1020
Sau3AI GATC 1 cut(s) 652
Sau96I GGNCC 2 cut(s) 112, 970
ScaI AGTACT 1 cut(s) 388
SchI GAGTC 1 cut(s) 567
SduI GDGCHC 2 cut(s) 380, 460
SfaNI GCATC 4 cut(s) 87, 277, 282, 705
SmiMI CAYNNNNRTG 1 cut(s) 179
SmlI CTYRAG 5 cut(s) 473, 481, 634, 855, 890
SmoI CTYRAG 5 cut(s) 473, 481, 634, 855, 890
Sse9I AATT 6 cut(s) 422, 520, 644, 776, 896, 951
SsiI CCGC 3 cut(s) 515, 1003, 1017
SspMI CTAG 3 cut(s) 248, 735, 1023
SstI GAGCTC 1 cut(s) 460
StyI CCWWGG 2 cut(s) 870, 941
TaaI ACNGT 1 cut(s) 155
TaiI ACGT 2 cut(s) 363, 377
TaqI TCGA 4 cut(s) 363, 532, 553, 602
TasI AATT 6 cut(s) 422, 520, 644, 776, 896, 951
TatI WGTACW 1 cut(s) 386
TfiI GAWTC 1 cut(s) 10
Tru1I TTAA 4 cut(s) 68, 297, 414, 792
Tru9I TTAA 4 cut(s) 68, 297, 414, 792
TscAI CASTG 1 cut(s) 325
TseI GCWGC 3 cut(s) 881, 922, 1019
TspDTI ATGAA 2 cut(s) 13, 530
TspGWI ACGGA 1 cut(s) 716
TspRI CASTG 1 cut(s) 325
Van91I CCANNNNNTGG 1 cut(s) 336
VneI GTGCAC 1 cut(s) 376
XapI RAATTY 2 cut(s) 644, 896
XcmI CCANNNNNNNNNTGG 1 cut(s) 157
XspI CTAG 3 cut(s) 248, 735, 1023
ZrmI AGTACT 1 cut(s) 388
Zsp2I ATGCAT 1 cut(s) 102
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.