FvH4_7g04111

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0000385
Physical Location & Seq
Reverse (-)
4713498 .. 4713821
324 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g04111.t1

Sequence Viewer

Length: 324 bp
ATGACCGGTGACACATTGAAGGACCGCATTGCACGAGTCGAGGATTTTCTCGGCTATCCAACAAGTGATGGAGCGATTTGTCTCTCACTGCAAGTTGATGAGTTGAAGAATGAAACAAGGAGGATGCGAGAAGCATTCACGGTGCATGTTACCGAGGCGGAGACCAAGTTCTATGACATGATGCAAGACTTAAATGCTTTATCGGACGTGGTAAAAGCAAGATTGACGGACATAGAAGAGAACATGGCATTGGTGAAAAGCGTTACAGCCAATGCCGGGCTCAACATGGAGGGCGGCATCATTCAAAAAGTTCCCGGAGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

108

Amino Acids

11.82

Weight (kDa)

4.69

Isoelectric Point (pI)

27.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000385)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g23713 FvH4_1g25744 FvH4_2g00261 FvH4_2g00262 FvH4_2g15681 FvH4_2g17851 FvH4_2g35550 FvH4_3g05280 FvH4_3g10531 FvH4_3g25910 FvH4_3g28953 FvH4_3g33371 FvH4_3g33536 FvH4_3g36090 FvH4_4g03471 FvH4_4g03480 FvH4_4g06701 FvH4_4g19351 FvH4_4g34281 FvH4_5g00040 FvH4_5g03811 FvH4_5g03812 FvH4_5g11822 FvH4_5g30921 FvH4_5g31701 FvH4_6g12161 FvH4_6g15222 FvH4_6g15223 FvH4_6g17701 FvH4_6g17710 FvH4_6g19301 FvH4_6g33011 FvH4_6g34501 FvH4_6g50161 FvH4_7g04111 FvH4_7g04120 FvH4_7g04121 FvH4_7g04122 FvH4_7g04123 FvH4_7g28231 FvH4_c7g00010
malus_domestica MD12G1084200.v1.1
prunus_persica Prupe.1G206200_v2.0.a1 Prupe.8G085600_v2.0.a1
pyrus_communis pycom01g11080 pycom02g20500 pycom09g18370 pycom12555g00210 pycom13g23120 pycom14g10590 pycom16g17620 pycom16g22750
rosa_chinensis RchiOBHm_Chr2g0137481 RchiOBHm_Chr6g0251961 RchiOBHm_Chr7g0185821
rosa_laevigata RLG00000005585 RLG00000010281 RLG00000010912 RLG00000030342 RLG00000034281
rosa_multiflora Rmu_sc0000096.1_g000010 Rmu_sc0002481.1_g000045 Rmu_sc0003598.1_g000009 Rmu_sc0003863.1_g000019 Rmu_sc0003973.1_g000002 Rmu_sc0004823.1_g000050 Rmu_sc0005621.1_g000007 Rmu_sc0006537.1_g000030 Rmu_sc0006608.1_g000014 Rmu_sc0008506.1_g000007 Rmu_sc0014428.1_g000001 Rmu_sc0035437.1_g000001 Rmu_ssc0000396.1_g000022
rosa_roxburghii Rroxscaffold_175G00432300 Rroxscaffold_17G00435390 Rroxscaffold_27G00446590 Rroxscaffold_29G00441820 Rroxscaffold_31G00438110 Rroxscaffold_32G00442750 Rroxscaffold_33G00439810 Rroxscaffold_37G00445160 Rroxscaffold_4G00306500 Rroxscaffold_4G00327700 Rroxscaffold_4G00332630 Rroxscaffold_52G00439360 Rroxscaffold_63G00444420 Rroxscaffold_76G00448580 Rroxscaffold_7G00156270
rosa_rugosa Rorug03G0295200
rosa_samantha Rh1BG433700 Rh1CG115400 Rh2AG676300 Rh2CG341800 Rh2DG381400 Rh3BG370100 Rh3BG370200 Rh4AG441600 Rh4BG076500 Rh4BG107400 Rh5BG005600 Rh6BG010100 Rh7BG000200
rosa_wichuraiana Rw0G003820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 25, 158, 294
AfiI CCNNNNNNNGG 1 cut(s) 276
AgeI ACCGGT 1 cut(s) 5
AgsI TTSAA 3 cut(s) 19, 106, 305
AjiI CACGTC 1 cut(s) 208
AjuI GAANNNNNNNTTGG 2 cut(s) 233, 265
AloI GAACNNNNNNTCC 2 cut(s) 152, 184
Alw26I GTCTC 2 cut(s) 86, 155
AsiGI ACCGGT 1 cut(s) 5
AspS9I GGNCC 1 cut(s) 22
AsuC2I CCSGG 2 cut(s) 277, 315
AsuHPI GGTGA 2 cut(s) 20, 265
AvaII GGWCC 1 cut(s) 22
BanII GRGCYC 1 cut(s) 282
BauI CACGAG 1 cut(s) 33
BccI CCATC 1 cut(s) 62
BcnI CCSGG 2 cut(s) 277, 315
BcoDI GTCTC 2 cut(s) 86, 155
BisI GCNGC 1 cut(s) 295
BlsI GCNGC 1 cut(s) 296
Bme1390I CCNGG 2 cut(s) 277, 315
Bme18I GGWCC 1 cut(s) 22
BmgBI CACGTC 1 cut(s) 208
BmgT120I GGNCC 1 cut(s) 22
BmiI GGNNCC 1 cut(s) 319
BmrFI CCNGG 2 cut(s) 277, 315
BmsI GCATC 3 cut(s) 114, 171, 306
BpuMI CCSGG 2 cut(s) 277, 315
BsaI GGTCTC 1 cut(s) 155
BsaJI CCNNGG 1 cut(s) 153
BsaWI WCCGGW 1 cut(s) 5
BsaXI ACNNNNNCTCC 2 cut(s) 152, 182
Bsc4I CCNNNNNNNGG 1 cut(s) 276
Bse118I RCCGGY 1 cut(s) 5
Bse3DI GCAATG 1 cut(s) 27
BseDI CCNNGG 1 cut(s) 153
BseGI GGATG 1 cut(s) 129
BseLI CCNNNNNNNGG 1 cut(s) 276
BseMI GCAATG 1 cut(s) 27
BshTI ACCGGT 1 cut(s) 5
BsiSI CCGG 3 cut(s) 6, 276, 315
BslI CCNNNNNNNGG 1 cut(s) 276
BsmAI GTCTC 2 cut(s) 86, 155
BsmI GAATGC 1 cut(s) 134
Bso31I GGTCTC 1 cut(s) 155
Bsp1286I GDGCHC 1 cut(s) 282
BspACI CCGC 3 cut(s) 25, 158, 294
BspLI GGNNCC 1 cut(s) 319
BspTNI GGTCTC 1 cut(s) 155
BsrDI GCAATG 1 cut(s) 27
BsrFI RCCGGY 1 cut(s) 5
BssAI RCCGGY 1 cut(s) 5
BssECI CCNNGG 1 cut(s) 153
BssSI CACGAG 1 cut(s) 33
Bst2BI CACGAG 1 cut(s) 33
Bst4CI ACNGT 1 cut(s) 142
Bst6I CTCTTC 1 cut(s) 231
BstF5I GGATG 1 cut(s) 129
BstMAI GTCTC 2 cut(s) 86, 155
BstNSI RCATGY 1 cut(s) 149
BstSCI CCNGG 2 cut(s) 275, 313
BtrI CACGTC 1 cut(s) 208
BtsCI GGATG 1 cut(s) 129
BtsI GCAGTG 1 cut(s) 86
BtsIMutI CAGTG 1 cut(s) 86
Cfr10I RCCGGY 1 cut(s) 5
Cfr13I GGNCC 1 cut(s) 22
CspAI ACCGGT 1 cut(s) 5
CviAII CATG 4 cut(s) 146, 178, 244, 286
CviJI RGCY 4 cut(s) 54, 269, 280, 320
CviKI_1 RGCY 4 cut(s) 54, 269, 280, 320
Eam1104I CTCTTC 1 cut(s) 231
EarI CTCTTC 1 cut(s) 231
EciI GGCGGA 1 cut(s) 173
Eco24I GRGCYC 1 cut(s) 282
Eco31I GGTCTC 1 cut(s) 155
Eco47I GGWCC 1 cut(s) 22
EcoT38I GRGCYC 1 cut(s) 282
FaeI CATG 4 cut(s) 149, 181, 247, 289
FaiI YATR 6 cut(s) 147, 174, 179, 233, 245, 287
FatI CATG 4 cut(s) 145, 177, 243, 285
Fnu4HI GCNGC 1 cut(s) 295
FokI GGATG 1 cut(s) 136
FriOI GRGCYC 1 cut(s) 282
Fsp4HI GCNGC 1 cut(s) 295
GluI GCNGC 1 cut(s) 295
HapII CCGG 3 cut(s) 6, 276, 315
Hin1II CATG 4 cut(s) 149, 181, 247, 289
HinfI GANTC 1 cut(s) 36
HpaII CCGG 3 cut(s) 6, 276, 315
HphI GGTGA 2 cut(s) 20, 265
Hpy188I TCNGA 1 cut(s) 205
HpyAV CCTTC 1 cut(s) 13
HpyCH4III ACNGT 1 cut(s) 142
HpyCH4IV ACGT 1 cut(s) 207
HpyCH4V TGCA 4 cut(s) 32, 91, 145, 184
HpySE526I ACGT 1 cut(s) 207
Hsp92II CATG 4 cut(s) 149, 181, 247, 289
LmnI GCTCC 2 cut(s) 71, 317
LpnPI CCDG 2 cut(s) 19, 289
LweI GCATC 3 cut(s) 114, 171, 306
MaeII ACGT 1 cut(s) 207
MaeIII GTNAC 3 cut(s) 8, 148, 262
MboII GAAGA 2 cut(s) 118, 248
MhlI GDGCHC 1 cut(s) 282
MlyI GAGTC 1 cut(s) 45
MmeI TCCRAC 1 cut(s) 83
MnlI CCTC 4 cut(s) 34, 114, 148, 283
MseI TTAA 1 cut(s) 191
MspI CCGG 3 cut(s) 6, 276, 315
MspR9I CCNGG 2 cut(s) 277, 315
Mva1269I GAATGC 1 cut(s) 134
NciI CCSGG 2 cut(s) 277, 315
NlaIII CATG 4 cut(s) 149, 181, 247, 289
NlaIV GGNNCC 1 cut(s) 319
NmeAIII GCCGAG 1 cut(s) 30
NmuCI GTSAC 1 cut(s) 8
NspI RCATGY 1 cut(s) 149
PctI GAATGC 1 cut(s) 134
PfoI TCCNGGA 1 cut(s) 313
PinAI ACCGGT 1 cut(s) 5
PkrI GCNGC 1 cut(s) 296
PleI GAGTC 1 cut(s) 44
PpsI GAGTC 1 cut(s) 44
PspN4I GGNNCC 1 cut(s) 319
PspPI GGNCC 1 cut(s) 22
SaqAI TTAA 1 cut(s) 191
SatI GCNGC 1 cut(s) 295
Sau96I GGNCC 1 cut(s) 22
SchI GAGTC 1 cut(s) 45
ScrFI CCNGG 2 cut(s) 277, 315
SduI GDGCHC 1 cut(s) 282
SetI ASST 1 cut(s) 210
SfaNI GCATC 3 cut(s) 114, 171, 306
SinI GGWCC 1 cut(s) 22
SsiI CCGC 3 cut(s) 25, 158, 294
StyD4I CCNGG 2 cut(s) 275, 313
TaaI ACNGT 1 cut(s) 142
TaiI ACGT 1 cut(s) 210
TaqI TCGA 1 cut(s) 39
TauI GCSGC 1 cut(s) 297
Tru1I TTAA 1 cut(s) 191
Tru9I TTAA 1 cut(s) 191
TscAI CASTG 1 cut(s) 93
TseFI GTSAC 1 cut(s) 8
Tsp45I GTSAC 1 cut(s) 8
TspDTI ATGAA 1 cut(s) 126
TspGWI ACGGA 1 cut(s) 242
TspRI CASTG 1 cut(s) 93
VpaK11BI GGWCC 1 cut(s) 22
XceI RCATGY 1 cut(s) 149
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.