RchiOBHm_Chr7g0185821

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000385
Physical Location & Seq
Forward (+)
5910359 .. 5910959
601 bp
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UTR
Exon/CDS
Intron
PRQ16586

Sequence Viewer

Length: 486 bp
ATGGCAACGTCCAAGCTTGTTGCCTCGACATGGGTCTTCACCCCTCGACCTTCTAATCCCTCGGGCTATGCTCCAAAGCCACTAGCATGCTTCTTATGCAGAGGACCTCATAGAGTGAATGAATGCCCTCATAAGACTGCTCTCTCTGCTCTACAGGCTCATATTCAATCGAAGGAAATAGAGGATCAGCAAGAGCCGGAGGAGGAACCTGGTCACATGGGAGCTTTGAGATTCTTGGGTGCGGTGGAGAAACAACCACGATCACCTAAGAAGTCCCAAGCTAAAGGCTTGATGTTCGTAGATGGTAGTATTAATGGGAAAGGAGCCAAGAGTGTTGGGGTTGAAGTTGGAGAAGGATGTGGGCCGCATGAAAGCTGTGAACTCAAAGGCTTCACCCACAACGGGCCTATCTCGAGGGGTATCACTCAAGTTGGGTCACTGGCAAGGGAAGACCGACCTCGTAGTTGTTCAGATGGACGACTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

161

Amino Acids

17.26

Weight (kDa)

8.8

Isoelectric Point (pI)

54.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000385)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g23713 FvH4_1g25744 FvH4_2g00261 FvH4_2g00262 FvH4_2g15681 FvH4_2g17851 FvH4_2g35550 FvH4_3g05280 FvH4_3g10531 FvH4_3g25910 FvH4_3g28953 FvH4_3g33371 FvH4_3g33536 FvH4_3g36090 FvH4_4g03471 FvH4_4g03480 FvH4_4g06701 FvH4_4g19351 FvH4_4g34281 FvH4_5g00040 FvH4_5g03811 FvH4_5g03812 FvH4_5g11822 FvH4_5g30921 FvH4_5g31701 FvH4_6g12161 FvH4_6g15222 FvH4_6g15223 FvH4_6g17701 FvH4_6g17710 FvH4_6g19301 FvH4_6g33011 FvH4_6g34501 FvH4_6g50161 FvH4_7g04111 FvH4_7g04120 FvH4_7g04121 FvH4_7g04122 FvH4_7g04123 FvH4_7g28231 FvH4_c7g00010
malus_domestica MD12G1084200.v1.1
prunus_persica Prupe.1G206200_v2.0.a1 Prupe.8G085600_v2.0.a1
pyrus_communis pycom01g11080 pycom02g20500 pycom09g18370 pycom12555g00210 pycom13g23120 pycom14g10590 pycom16g17620 pycom16g22750
rosa_chinensis RchiOBHm_Chr2g0137481 RchiOBHm_Chr6g0251961 RchiOBHm_Chr7g0185821
rosa_laevigata RLG00000005585 RLG00000010281 RLG00000010912 RLG00000030342 RLG00000034281
rosa_multiflora Rmu_sc0000096.1_g000010 Rmu_sc0002481.1_g000045 Rmu_sc0003598.1_g000009 Rmu_sc0003863.1_g000019 Rmu_sc0003973.1_g000002 Rmu_sc0004823.1_g000050 Rmu_sc0005621.1_g000007 Rmu_sc0006537.1_g000030 Rmu_sc0006608.1_g000014 Rmu_sc0008506.1_g000007 Rmu_sc0014428.1_g000001 Rmu_sc0035437.1_g000001 Rmu_ssc0000396.1_g000022
rosa_roxburghii Rroxscaffold_175G00432300 Rroxscaffold_17G00435390 Rroxscaffold_27G00446590 Rroxscaffold_29G00441820 Rroxscaffold_31G00438110 Rroxscaffold_32G00442750 Rroxscaffold_33G00439810 Rroxscaffold_37G00445160 Rroxscaffold_4G00306500 Rroxscaffold_4G00327700 Rroxscaffold_4G00332630 Rroxscaffold_52G00439360 Rroxscaffold_63G00444420 Rroxscaffold_76G00448580 Rroxscaffold_7G00156270
rosa_rugosa Rorug03G0295200
rosa_samantha Rh1BG433700 Rh1CG115400 Rh2AG676300 Rh2CG341800 Rh2DG381400 Rh3BG370100 Rh3BG370200 Rh4AG441600 Rh4BG076500 Rh4BG107400 Rh5BG005600 Rh6BG010100 Rh7BG000200
rosa_wichuraiana Rw0G003820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 242, 365
AclWI GGATC 1 cut(s) 192
AfiI CCNNNNNNNGG 2 cut(s) 30, 402
AgsI TTSAA 2 cut(s) 167, 344
AjnI CCWGG 1 cut(s) 208
AluBI AGCT 4 cut(s) 16, 224, 281, 375
AluI AGCT 4 cut(s) 16, 224, 281, 375
AlwI GGATC 1 cut(s) 192
Ama87I CYCGRG 2 cut(s) 61, 412
AoxI GGCC 2 cut(s) 362, 404
AseI ATTAAT 1 cut(s) 312
AspS9I GGNCC 3 cut(s) 104, 362, 404
AsuHPI GGTGA 3 cut(s) 31, 255, 385
AvaI CYCGRG 2 cut(s) 61, 412
AvaII GGWCC 1 cut(s) 104
BbsI GAAGAC 2 cut(s) 28, 456
BccI CCATC 2 cut(s) 296, 467
BciT130I CCWGG 1 cut(s) 210
BfaI CTAG 1 cut(s) 83
BfmI CTRYAG 1 cut(s) 152
BisI GCNGC 1 cut(s) 365
BlsI GCNGC 1 cut(s) 366
Bme1390I CCNGG 1 cut(s) 210
Bme18I GGWCC 1 cut(s) 104
BmeT110I CYCGRG 2 cut(s) 61, 412
BmgT120I GGNCC 3 cut(s) 104, 362, 404
BmiI GGNNCC 2 cut(s) 207, 325
BmrFI CCNGG 1 cut(s) 210
BoxI GACNNNNGTC 1 cut(s) 32
BpiI GAAGAC 2 cut(s) 28, 456
BpuEI CTTGAG 1 cut(s) 411
BsaJI CCNNGG 1 cut(s) 60
Bsc4I CCNNNNNNNGG 2 cut(s) 30, 402
Bse1I ACTGG 1 cut(s) 444
BseBI CCWGG 1 cut(s) 210
BseDI CCNNGG 1 cut(s) 60
BseGI GGATG 1 cut(s) 362
BseLI CCNNNNNNNGG 2 cut(s) 30, 402
BseNI ACTGG 1 cut(s) 444
BseRI GAGGAG 1 cut(s) 215
BshFI GGCC 2 cut(s) 364, 406
BsiHKCI CYCGRG 2 cut(s) 61, 412
BsiSI CCGG 1 cut(s) 197
BslFI GGGAC 1 cut(s) 259
BslI CCNNNNNNNGG 2 cut(s) 30, 402
BsmFI GGGAC 1 cut(s) 259
BsmI GAATGC 1 cut(s) 128
BsnI GGCC 2 cut(s) 364, 406
BsoBI CYCGRG 2 cut(s) 61, 412
Bsp143I GATC 2 cut(s) 184, 260
BspACI CCGC 2 cut(s) 242, 365
BspANI GGCC 2 cut(s) 364, 406
BspLI GGNNCC 2 cut(s) 207, 325
BspPI GGATC 1 cut(s) 192
BsrI ACTGG 1 cut(s) 444
BssECI CCNNGG 1 cut(s) 60
BssMI GATC 2 cut(s) 184, 260
Bst2UI CCWGG 1 cut(s) 210
BstC8I GCNNGC 1 cut(s) 88
BstDEI CTNAG 1 cut(s) 267
BstF5I GGATG 1 cut(s) 362
BstKTI GATC 2 cut(s) 187, 263
BstMBI GATC 2 cut(s) 184, 260
BstMWI GCNNNNNNNGC 3 cut(s) 96, 146, 155
BstNI CCWGG 1 cut(s) 210
BstNSI RCATGY 1 cut(s) 90
BstPAI GACNNNNGTC 1 cut(s) 32
BstSCI CCNGG 1 cut(s) 208
BstSFI CTRYAG 1 cut(s) 152
BstV2I GAAGAC 2 cut(s) 28, 456
BsuRI GGCC 2 cut(s) 364, 406
BtsCI GGATG 1 cut(s) 362
BtsIMutI CAGTG 1 cut(s) 437
Cac8I GCNNGC 1 cut(s) 88
Cfr13I GGNCC 3 cut(s) 104, 362, 404
CsiI ACCWGGT 1 cut(s) 208
CviAII CATG 4 cut(s) 30, 87, 217, 368
DdeI CTNAG 1 cut(s) 267
DpnI GATC 2 cut(s) 186, 262
DpnII GATC 2 cut(s) 184, 260
Eco47I GGWCC 1 cut(s) 104
Eco88I CYCGRG 2 cut(s) 61, 412
EcoO109I RGGNCCY 1 cut(s) 104
EcoRII CCWGG 1 cut(s) 208
FaeI CATG 4 cut(s) 33, 90, 220, 371
FaiI YATR 9 cut(s) 31, 69, 88, 97, 111, 132, 162, 218, 369
FaqI GGGAC 1 cut(s) 259
FatI CATG 4 cut(s) 29, 86, 216, 367
Fnu4HI GCNGC 1 cut(s) 365
FokI GGATG 1 cut(s) 369
Fsp4HI GCNGC 1 cut(s) 365
FspBI CTAG 1 cut(s) 83
GluI GCNGC 1 cut(s) 365
HaeIII GGCC 2 cut(s) 364, 406
HapII CCGG 1 cut(s) 197
Hin1II CATG 4 cut(s) 33, 90, 220, 371
HindIII AAGCTT 1 cut(s) 14
HinfI GANTC 1 cut(s) 231
HpaII CCGG 1 cut(s) 197
HphI GGTGA 3 cut(s) 31, 255, 385
Hpy166II GTNNAC 1 cut(s) 380
Hpy188I TCNGA 1 cut(s) 472
Hpy188III TCNNGA 1 cut(s) 412
Hpy8I GTNNAC 1 cut(s) 380
HpyAV CCTTC 3 cut(s) 60, 166, 347
HpyCH4IV ACGT 1 cut(s) 8
HpyCH4V TGCA 1 cut(s) 99
HpyF10VI GCNNNNNNNGC 3 cut(s) 96, 146, 155
HpyF3I CTNAG 1 cut(s) 267
HpySE526I ACGT 1 cut(s) 8
Hsp92II CATG 4 cut(s) 33, 90, 220, 371
Kzo9I GATC 2 cut(s) 184, 260
LmnI GCTCC 3 cut(s) 76, 221, 323
LpnPI CCDG 5 cut(s) 140, 195, 210, 222, 425
MabI ACCWGGT 1 cut(s) 208
MaeI CTAG 1 cut(s) 83
MaeII ACGT 1 cut(s) 8
MaeIII GTNAC 2 cut(s) 212, 435
MalI GATC 2 cut(s) 186, 262
MboI GATC 2 cut(s) 184, 260
MboII GAAGA 2 cut(s) 28, 461
MmeI TCCRAC 1 cut(s) 328
MseI TTAA 1 cut(s) 312
MslI CAYNNNNRTG 1 cut(s) 85
MspI CCGG 1 cut(s) 197
MspR9I CCNGG 1 cut(s) 210
Mva1269I GAATGC 1 cut(s) 128
MvaI CCWGG 1 cut(s) 210
MwoI GCNNNNNNNGC 3 cut(s) 96, 146, 155
NdeII GATC 2 cut(s) 184, 260
NlaIII CATG 4 cut(s) 33, 90, 220, 371
NlaIV GGNNCC 2 cut(s) 207, 325
NmuCI GTSAC 2 cut(s) 212, 435
NspI RCATGY 1 cut(s) 90
PaeI GCATGC 1 cut(s) 90
PaeR7I CTCGAG 1 cut(s) 412
PctI GAATGC 1 cut(s) 128
PfeI GAWTC 1 cut(s) 231
PkrI GCNGC 1 cut(s) 366
PpuMI RGGWCCY 1 cut(s) 104
PshAI GACNNNNGTC 1 cut(s) 32
PshBI ATTAAT 1 cut(s) 312
Psp5II RGGWCCY 1 cut(s) 104
Psp6I CCWGG 1 cut(s) 208
PspGI CCWGG 1 cut(s) 208
PspN4I GGNNCC 2 cut(s) 207, 325
PspPI GGNCC 3 cut(s) 104, 362, 404
PspPPI RGGWCCY 1 cut(s) 104
RseI CAYNNNNRTG 1 cut(s) 85
SaqAI TTAA 1 cut(s) 312
SatI GCNGC 1 cut(s) 365
Sau3AI GATC 2 cut(s) 184, 260
Sau96I GGNCC 3 cut(s) 104, 362, 404
ScrFI CCNGG 1 cut(s) 210
SexAI ACCWGGT 1 cut(s) 208
SfcI CTRYAG 1 cut(s) 152
Sfr274I CTCGAG 1 cut(s) 412
SinI GGWCC 1 cut(s) 104
SlaI CTCGAG 1 cut(s) 412
SmiMI CAYNNNNRTG 1 cut(s) 85
SmlI CTYRAG 2 cut(s) 412, 426
SmoI CTYRAG 2 cut(s) 412, 426
SphI GCATGC 1 cut(s) 90
SsiI CCGC 2 cut(s) 242, 365
SspMI CTAG 1 cut(s) 83
StyD4I CCNGG 1 cut(s) 208
TaiI ACGT 1 cut(s) 11
TaqI TCGA 4 cut(s) 26, 46, 170, 413
TaqII GACCGA 1 cut(s) 468
TauI GCSGC 1 cut(s) 367
TfiI GAWTC 1 cut(s) 231
Tru1I TTAA 1 cut(s) 312
Tru9I TTAA 1 cut(s) 312
TscAI CASTG 1 cut(s) 444
TseFI GTSAC 2 cut(s) 212, 435
Tsp45I GTSAC 2 cut(s) 212, 435
TspDTI ATGAA 2 cut(s) 135, 384
TspRI CASTG 1 cut(s) 444
VpaK11BI GGWCC 1 cut(s) 104
VspI ATTAAT 1 cut(s) 312
XceI RCATGY 1 cut(s) 90
XhoI CTCGAG 1 cut(s) 412
XspI CTAG 1 cut(s) 83
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.