Rh2DG381400
ERF Family

DNA RNA polymerases superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000385
Physical Location & Seq
Reverse (-)
54973166 .. 54973819
654 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG381400.1

Sequence Viewer

Length: 654 bp
ATGTATCTTGCGGGGGATGGTAAACTATGGTGGCAGACTCGGGTGCAAGATGATGCTAGCGTGGGCAGGCCAAGAATCAAGGAGTGGGAAACCCTTAAGAACGAATTGAAGACTCAATTCCAACCTTGCATTGCTCCATGGCTTGCAAGGGACTCTCTCAAGAAGCTGCGACAGACAGGCACAATACGAGAGTATGTCAAGGAGTTCAGTTCCTTGATGCTGGACATTTCAAATATGTCAGAGGAGGACAAGTTATTCAATTTTATGTCCGAGTTGCAACCCTGGGCGCATGCTGACCTGCGGAGGCAAGGTGTAAGGGATTTACAAGGGGTCGTGGCAGCAACGGATGACTTGGTAGACTTCAAATACGGTCCTTCTTCCACAAACTCAAAGAAGGTATCCGAAAGCAAGGAGGGCAAGGATAACCCTTCCAAGGGCGGAAGAAAGTTTGATGGAAAGAAGAAAGATGGTGGCAGTAGCAAGAGGAATTCGAGCCCGTCCCATGATAAGGACAGGAGGTCTGGTGGTTATTTCCTGTGCGGAGGTCCATATCGTGCAAAGGATTGCCCAAATCGAGAGAAGCTGACTACCTTGGTGGCTGAGATCAATGAAGAAGGCAGCAGTGAGTCTACTCCACTCTTATCACCATTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Asp_protease_2 RVT_1 Retrotrans_gag rve

Protein Analysis

217

Amino Acids

24.44

Weight (kDa)

9.01

Isoelectric Point (pI)

46.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Retrotrans_gag PF03732 2 - 92 1e-15 Retrotransposon gag protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000385)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g23713 FvH4_1g25744 FvH4_2g00261 FvH4_2g00262 FvH4_2g15681 FvH4_2g17851 FvH4_2g35550 FvH4_3g05280 FvH4_3g10531 FvH4_3g25910 FvH4_3g28953 FvH4_3g33371 FvH4_3g33536 FvH4_3g36090 FvH4_4g03471 FvH4_4g03480 FvH4_4g06701 FvH4_4g19351 FvH4_4g34281 FvH4_5g00040 FvH4_5g03811 FvH4_5g03812 FvH4_5g11822 FvH4_5g30921 FvH4_5g31701 FvH4_6g12161 FvH4_6g15222 FvH4_6g15223 FvH4_6g17701 FvH4_6g17710 FvH4_6g19301 FvH4_6g33011 FvH4_6g34501 FvH4_6g50161 FvH4_7g04111 FvH4_7g04120 FvH4_7g04121 FvH4_7g04122 FvH4_7g04123 FvH4_7g28231 FvH4_c7g00010
malus_domestica MD12G1084200.v1.1
prunus_persica Prupe.1G206200_v2.0.a1 Prupe.8G085600_v2.0.a1
pyrus_communis pycom01g11080 pycom02g20500 pycom09g18370 pycom12555g00210 pycom13g23120 pycom14g10590 pycom16g17620 pycom16g22750
rosa_chinensis RchiOBHm_Chr2g0137481 RchiOBHm_Chr6g0251961 RchiOBHm_Chr7g0185821
rosa_laevigata RLG00000005585 RLG00000010281 RLG00000010912 RLG00000030342 RLG00000034281
rosa_multiflora Rmu_sc0000096.1_g000010 Rmu_sc0002481.1_g000045 Rmu_sc0003598.1_g000009 Rmu_sc0003863.1_g000019 Rmu_sc0003973.1_g000002 Rmu_sc0004823.1_g000050 Rmu_sc0005621.1_g000007 Rmu_sc0006537.1_g000030 Rmu_sc0006608.1_g000014 Rmu_sc0008506.1_g000007 Rmu_sc0014428.1_g000001 Rmu_sc0035437.1_g000001 Rmu_ssc0000396.1_g000022
rosa_roxburghii Rroxscaffold_175G00432300 Rroxscaffold_17G00435390 Rroxscaffold_27G00446590 Rroxscaffold_29G00441820 Rroxscaffold_31G00438110 Rroxscaffold_32G00442750 Rroxscaffold_33G00439810 Rroxscaffold_37G00445160 Rroxscaffold_4G00306500 Rroxscaffold_4G00327700 Rroxscaffold_4G00332630 Rroxscaffold_52G00439360 Rroxscaffold_63G00444420 Rroxscaffold_76G00448580 Rroxscaffold_7G00156270
rosa_rugosa Rorug03G0295200
rosa_samantha Rh1BG433700 Rh1CG115400 Rh2AG676300 Rh2CG341800 Rh2DG381400 Rh3BG370100 Rh3BG370200 Rh4AG441600 Rh4BG076500 Rh4BG107400 Rh5BG005600 Rh6BG010100 Rh7BG000200
rosa_wichuraiana Rw0G003820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 306
AccI GTMKAC 2 cut(s) 357, 629
AciI CCGC 4 cut(s) 11, 301, 438, 540
AcsI RAATTY 1 cut(s) 487
AfiI CCNNNNNNNGG 3 cut(s) 433, 434, 508
AflII CTTAAG 1 cut(s) 95
AgsI TTSAA 4 cut(s) 109, 231, 259, 364
AhdI GACNNNNNGTC 1 cut(s) 517
AjnI CCWGG 1 cut(s) 281
AluBI AGCT 2 cut(s) 166, 583
AluI AGCT 2 cut(s) 166, 583
Ama87I CYCGRG 1 cut(s) 39
AoxI GGCC 1 cut(s) 68
ApeKI GCWGC 3 cut(s) 166, 338, 618
ApoI RAATTY 1 cut(s) 487
AspLEI GCGC 1 cut(s) 289
AspS9I GGNCC 2 cut(s) 371, 545
AsuHPI GGTGA 1 cut(s) 636
AsuNHI GCTAGC 1 cut(s) 56
AvaI CYCGRG 1 cut(s) 39
AvaII GGWCC 2 cut(s) 371, 545
BanII GRGCYC 1 cut(s) 497
BbsI GAAGAC 1 cut(s) 116
BbvI GCAGC 3 cut(s) 153, 350, 630
BccI CCATC 3 cut(s) 11, 446, 461
BciT130I CCWGG 1 cut(s) 283
BciVI GTATCC 1 cut(s) 409
BfaI CTAG 1 cut(s) 57
BfrI CTTAAG 1 cut(s) 95
BfuAI ACCTGC 1 cut(s) 306
BfuI GTATCC 1 cut(s) 409
BisI GCNGC 3 cut(s) 167, 339, 619
BlsI GCNGC 3 cut(s) 168, 340, 620
Bme1390I CCNGG 1 cut(s) 283
Bme18I GGWCC 2 cut(s) 371, 545
BmeRI GACNNNNNGTC 1 cut(s) 517
BmeT110I CYCGRG 1 cut(s) 39
BmgT120I GGNCC 2 cut(s) 371, 545
BmrFI CCNGG 1 cut(s) 283
BmsI GCATC 2 cut(s) 43, 207
BmtI GCTAGC 1 cut(s) 60
BpiI GAAGAC 1 cut(s) 116
BpuEI CTTGAG 1 cut(s) 143
BsaJI CCNNGG 5 cut(s) 137, 281, 282, 432, 591
BsaXI ACNNNNNCTCC 6 cut(s) 236, 266, 295, 325, 508, 538
Bsc4I CCNNNNNNNGG 3 cut(s) 433, 434, 508
Bse3DI GCAATG 1 cut(s) 129
BseBI CCWGG 1 cut(s) 283
BseDI CCNNGG 5 cut(s) 137, 281, 282, 432, 591
BseGI GGATG 2 cut(s) 22, 352
BseLI CCNNNNNNNGG 3 cut(s) 433, 434, 508
BseMI GCAATG 1 cut(s) 129
BseMII CTCAG 1 cut(s) 591
BseRI GAGGAG 1 cut(s) 257
BseXI GCAGC 3 cut(s) 153, 350, 630
BshFI GGCC 1 cut(s) 70
BsiHKCI CYCGRG 1 cut(s) 39
BslFI GGGAC 2 cut(s) 164, 484
BslI CCNNNNNNNGG 3 cut(s) 433, 434, 508
BsmFI GGGAC 2 cut(s) 164, 484
BsnI GGCC 1 cut(s) 70
BsoBI CYCGRG 1 cut(s) 39
Bsp1286I GDGCHC 1 cut(s) 497
Bsp143I GATC 1 cut(s) 603
Bsp19I CCATGG 1 cut(s) 137
BspACI CCGC 4 cut(s) 11, 301, 438, 540
BspANI GGCC 1 cut(s) 70
BspCNI CTCAG 1 cut(s) 592
BspMI ACCTGC 1 cut(s) 306
BspOI GCTAGC 1 cut(s) 60
BspTI CTTAAG 1 cut(s) 95
BsrDI GCAATG 1 cut(s) 129
BssECI CCNNGG 5 cut(s) 137, 281, 282, 432, 591
BssMI GATC 1 cut(s) 603
BssT1I CCWWGG 3 cut(s) 137, 432, 591
Bst2UI CCWGG 1 cut(s) 283
Bst4CI ACNGT 1 cut(s) 371
BstAFI CTTAAG 1 cut(s) 95
BstC8I GCNNGC 4 cut(s) 58, 68, 144, 291
BstDEI CTNAG 1 cut(s) 600
BstDSI CCRYGG 1 cut(s) 137
BstF5I GGATG 2 cut(s) 22, 352
BstHHI GCGC 1 cut(s) 289
BstKTI GATC 1 cut(s) 606
BstMBI GATC 1 cut(s) 603
BstMWI GCNNNNNNNGC 1 cut(s) 414
BstNI CCWGG 1 cut(s) 283
BstNSI RCATGY 1 cut(s) 293
BstSCI CCNGG 1 cut(s) 281
BstV1I GCAGC 3 cut(s) 153, 350, 630
BstV2I GAAGAC 1 cut(s) 116
BsuI GTATCC 1 cut(s) 409
BsuRI GGCC 1 cut(s) 70
BtgI CCRYGG 1 cut(s) 137
BtsCI GGATG 2 cut(s) 22, 352
BtsI GCAGTG 1 cut(s) 628
BtsIMutI CAGTG 1 cut(s) 628
BveI ACCTGC 1 cut(s) 306
Cac8I GCNNGC 4 cut(s) 58, 68, 144, 291
CfoI GCGC 1 cut(s) 289
Cfr13I GGNCC 2 cut(s) 371, 545
CviAII CATG 3 cut(s) 138, 290, 503
CviJI RGCY 6 cut(s) 70, 142, 166, 495, 583, 599
CviKI_1 RGCY 6 cut(s) 70, 142, 166, 495, 583, 599
DdeI CTNAG 1 cut(s) 600
DpnI GATC 1 cut(s) 605
DpnII GATC 1 cut(s) 603
DriI GACNNNNNGTC 1 cut(s) 517
Eam1105I GACNNNNNGTC 1 cut(s) 517
EciI GGCGGA 1 cut(s) 453
Eco130I CCWWGG 3 cut(s) 137, 432, 591
Eco24I GRGCYC 1 cut(s) 497
Eco47I GGWCC 2 cut(s) 371, 545
Eco88I CYCGRG 1 cut(s) 39
EcoRI GAATTC 1 cut(s) 487
EcoRII CCWGG 1 cut(s) 281
EcoT14I CCWWGG 3 cut(s) 137, 432, 591
EcoT38I GRGCYC 1 cut(s) 497
ErhI CCWWGG 3 cut(s) 137, 432, 591
FaeI CATG 3 cut(s) 141, 293, 506
FaiI YATR 8 cut(s) 28, 139, 195, 236, 266, 291, 504, 550
FaqI GGGAC 2 cut(s) 164, 484
FatI CATG 3 cut(s) 137, 289, 502
FauI CCCGC 1 cut(s) 4
FblI GTMKAC 2 cut(s) 357, 629
Fnu4HI GCNGC 3 cut(s) 167, 339, 619
FokI GGATG 2 cut(s) 29, 359
FriOI GRGCYC 1 cut(s) 497
Fsp4HI GCNGC 3 cut(s) 167, 339, 619
FspBI CTAG 1 cut(s) 57
GlaI GCGC 1 cut(s) 288
GluI GCNGC 3 cut(s) 167, 339, 619
HaeIII GGCC 1 cut(s) 70
HhaI GCGC 1 cut(s) 289
Hin1II CATG 3 cut(s) 141, 293, 506
Hin6I GCGC 1 cut(s) 287
HinP1I GCGC 1 cut(s) 287
HinfI GANTC 5 cut(s) 37, 75, 112, 152, 626
HphI GGTGA 1 cut(s) 636
Hpy166II GTNNAC 3 cut(s) 23, 358, 630
Hpy188I TCNGA 3 cut(s) 241, 271, 403
Hpy188III TCNNGA 2 cut(s) 160, 575
Hpy8I GTNNAC 3 cut(s) 23, 358, 630
HpyAV CCTTC 4 cut(s) 384, 388, 438, 608
HpyCH4III ACNGT 1 cut(s) 371
HpyCH4V TGCA 5 cut(s) 46, 129, 146, 277, 557
HpyF10VI GCNNNNNNNGC 1 cut(s) 414
HpyF3I CTNAG 1 cut(s) 600
Hsp92II CATG 3 cut(s) 141, 293, 506
HspAI GCGC 1 cut(s) 287
Kzo9I GATC 1 cut(s) 603
LmnI GCTCC 1 cut(s) 139
LpnPI CCDG 9 cut(s) 52, 162, 206, 268, 295, 311, 499, 507, 548
Lsp1109I GCAGC 3 cut(s) 153, 350, 630
LweI GCATC 2 cut(s) 43, 207
MaeI CTAG 1 cut(s) 57
MalI GATC 1 cut(s) 605
MboI GATC 1 cut(s) 603
MboII GAAGA 5 cut(s) 121, 369, 453, 472, 623
MhlI GDGCHC 1 cut(s) 497
MluCI AATT 4 cut(s) 104, 116, 259, 487
MlyI GAGTC 4 cut(s) 31, 106, 146, 635
MmeI TCCRAC 1 cut(s) 145
MnlI CCTC 7 cut(s) 235, 238, 297, 406, 477, 510, 536
MseI TTAA 1 cut(s) 96
MspCI CTTAAG 1 cut(s) 95
MspR9I CCNGG 1 cut(s) 283
MvaI CCWGG 1 cut(s) 283
MwoI GCNNNNNNNGC 1 cut(s) 414
NcoI CCATGG 1 cut(s) 137
NdeII GATC 1 cut(s) 603
NheI GCTAGC 1 cut(s) 56
NlaIII CATG 3 cut(s) 141, 293, 506
NspI RCATGY 1 cut(s) 293
PaeI GCATGC 1 cut(s) 293
PasI CCCWGGG 1 cut(s) 282
PfeI GAWTC 1 cut(s) 75
PkrI GCNGC 3 cut(s) 168, 340, 620
PleI GAGTC 4 cut(s) 31, 106, 146, 634
PpsI GAGTC 4 cut(s) 31, 106, 146, 634
Psp6I CCWGG 1 cut(s) 281
PspGI CCWGG 1 cut(s) 281
PspPI GGNCC 2 cut(s) 371, 545
SaqAI TTAA 1 cut(s) 96
SatI GCNGC 3 cut(s) 167, 339, 619
Sau3AI GATC 1 cut(s) 603
Sau96I GGNCC 2 cut(s) 371, 545
SchI GAGTC 4 cut(s) 31, 106, 146, 635
ScrFI CCNGG 1 cut(s) 283
SduI GDGCHC 1 cut(s) 497
SetI ASST 9 cut(s) 127, 168, 300, 313, 399, 521, 547, 585, 593
SfaNI GCATC 2 cut(s) 43, 207
SinI GGWCC 2 cut(s) 371, 545
SmlI CTYRAG 2 cut(s) 95, 158
SmoI CTYRAG 2 cut(s) 95, 158
SphI GCATGC 1 cut(s) 293
Sse9I AATT 4 cut(s) 104, 116, 259, 487
SsiI CCGC 4 cut(s) 11, 301, 438, 540
SspMI CTAG 1 cut(s) 57
StyD4I CCNGG 1 cut(s) 281
StyI CCWWGG 3 cut(s) 137, 432, 591
TaaI ACNGT 1 cut(s) 371
TaqI TCGA 2 cut(s) 491, 574
TasI AATT 4 cut(s) 104, 116, 259, 487
TfiI GAWTC 1 cut(s) 75
Tru1I TTAA 1 cut(s) 96
Tru9I TTAA 1 cut(s) 96
TscAI CASTG 1 cut(s) 628
TseI GCWGC 3 cut(s) 166, 338, 618
TspDTI ATGAA 1 cut(s) 624
TspGWI ACGGA 1 cut(s) 359
TspRI CASTG 1 cut(s) 628
Vha464I CTTAAG 1 cut(s) 95
VpaK11BI GGWCC 2 cut(s) 371, 545
XapI RAATTY 1 cut(s) 487
XceI RCATGY 1 cut(s) 293
XmiI GTMKAC 2 cut(s) 357, 629
XspI CTAG 1 cut(s) 57
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.