FvH4_3g05280

No description available

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Forward (+)
3052717 .. 3052947
231 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g05280.t1

Sequence Viewer

Length: 231 bp
ATGCAGCAACGAACCAAGCCAAAGGAAGGAAGGCAGCATGGACCCCAAAGGCTCGGCAGGGTGCAGTGTCGGGTGCATGATAAGTGTGCTCGGCAGGGTGCAATGTTGGGTGCGGCAGGATACATGAAAAGGTGCACTGCTGGGTGCATGTCAAGTGTGCTCGGCAGGGTGCTACGAAGGTGCGAGAAGGGTGCGAGAAAGGTGCGCTGCAGGGTGCTCGGCAGGGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

77

Amino Acids

8.5

Weight (kDa)

11.48

Isoelectric Point (pI)

44.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000385)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g23713 FvH4_1g25744 FvH4_2g00261 FvH4_2g00262 FvH4_2g15681 FvH4_2g17851 FvH4_2g35550 FvH4_3g05280 FvH4_3g10531 FvH4_3g25910 FvH4_3g28953 FvH4_3g33371 FvH4_3g33536 FvH4_3g36090 FvH4_4g03471 FvH4_4g03480 FvH4_4g06701 FvH4_4g19351 FvH4_4g34281 FvH4_5g00040 FvH4_5g03811 FvH4_5g03812 FvH4_5g11822 FvH4_5g30921 FvH4_5g31701 FvH4_6g12161 FvH4_6g15222 FvH4_6g15223 FvH4_6g17701 FvH4_6g17710 FvH4_6g19301 FvH4_6g33011 FvH4_6g34501 FvH4_6g50161 FvH4_7g04111 FvH4_7g04120 FvH4_7g04121 FvH4_7g04122 FvH4_7g04123 FvH4_7g28231 FvH4_c7g00010
malus_domestica MD12G1084200.v1.1
prunus_persica Prupe.1G206200_v2.0.a1 Prupe.8G085600_v2.0.a1
pyrus_communis pycom01g11080 pycom02g20500 pycom09g18370 pycom12555g00210 pycom13g23120 pycom14g10590 pycom16g17620 pycom16g22750
rosa_chinensis RchiOBHm_Chr2g0137481 RchiOBHm_Chr6g0251961 RchiOBHm_Chr7g0185821
rosa_laevigata RLG00000005585 RLG00000010281 RLG00000010912 RLG00000030342 RLG00000034281
rosa_multiflora Rmu_sc0000096.1_g000010 Rmu_sc0002481.1_g000045 Rmu_sc0003598.1_g000009 Rmu_sc0003863.1_g000019 Rmu_sc0003973.1_g000002 Rmu_sc0004823.1_g000050 Rmu_sc0005621.1_g000007 Rmu_sc0006537.1_g000030 Rmu_sc0006608.1_g000014 Rmu_sc0008506.1_g000007 Rmu_sc0014428.1_g000001 Rmu_sc0035437.1_g000001 Rmu_ssc0000396.1_g000022
rosa_roxburghii Rroxscaffold_175G00432300 Rroxscaffold_17G00435390 Rroxscaffold_27G00446590 Rroxscaffold_29G00441820 Rroxscaffold_31G00438110 Rroxscaffold_32G00442750 Rroxscaffold_33G00439810 Rroxscaffold_37G00445160 Rroxscaffold_4G00306500 Rroxscaffold_4G00327700 Rroxscaffold_4G00332630 Rroxscaffold_52G00439360 Rroxscaffold_63G00444420 Rroxscaffold_76G00448580 Rroxscaffold_7G00156270
rosa_rugosa Rorug03G0295200
rosa_samantha Rh1BG433700 Rh1CG115400 Rh2AG676300 Rh2CG341800 Rh2DG381400 Rh3BG370100 Rh3BG370200 Rh4AG441600 Rh4BG076500 Rh4BG107400 Rh5BG005600 Rh6BG010100 Rh7BG000200
rosa_wichuraiana Rw0G003820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 113
AfiI CCNNNNNNNGG 1 cut(s) 26
Alw21I GWGCWC 4 cut(s) 91, 137, 162, 219
Alw44I GTGCAC 1 cut(s) 133
ApaLI GTGCAC 1 cut(s) 133
ApeKI GCWGC 3 cut(s) 4, 34, 207
AspLEI GCGC 1 cut(s) 207
AspS9I GGNCC 1 cut(s) 41
AvaII GGWCC 1 cut(s) 41
BaeGI GKGCMC 1 cut(s) 137
Bbv12I GWGCWC 4 cut(s) 91, 137, 162, 219
BbvI GCAGC 3 cut(s) 16, 46, 194
BcgI CGANNNNNNTGC 5 cut(s) 173, 184, 199, 207, 218
BciVI GTATCC 1 cut(s) 113
BfmI CTRYAG 1 cut(s) 208
BfuI GTATCC 1 cut(s) 113
BisI GCNGC 4 cut(s) 5, 35, 114, 208
BlsI GCNGC 4 cut(s) 6, 36, 115, 209
Bme18I GGWCC 1 cut(s) 41
BmgT120I GGNCC 1 cut(s) 41
BmiI GGNNCC 1 cut(s) 43
Bsc4I CCNNNNNNNGG 1 cut(s) 26
Bse3DI GCAATG 1 cut(s) 108
BseLI CCNNNNNNNGG 1 cut(s) 26
BseMI GCAATG 1 cut(s) 108
BseSI GKGCMC 1 cut(s) 137
BseXI GCAGC 3 cut(s) 16, 46, 194
BseYI CCCAGC 1 cut(s) 140
BsgI GTGCAG 1 cut(s) 83
BsiHKAI GWGCWC 4 cut(s) 91, 137, 162, 219
BslI CCNNNNNNNGG 1 cut(s) 26
Bsp1286I GDGCHC 4 cut(s) 91, 137, 162, 219
BspACI CCGC 1 cut(s) 113
BspLI GGNNCC 1 cut(s) 43
BspMAI CTGCAG 1 cut(s) 212
BsrDI GCAATG 1 cut(s) 108
BstHHI GCGC 1 cut(s) 207
BstNSI RCATGY 1 cut(s) 151
BstSFI CTRYAG 1 cut(s) 208
BstSLI GKGCMC 1 cut(s) 137
BstV1I GCAGC 3 cut(s) 16, 46, 194
BsuI GTATCC 1 cut(s) 113
BtsI GCAGTG 2 cut(s) 71, 135
BtsIMutI CAGTG 2 cut(s) 71, 135
CfoI GCGC 1 cut(s) 207
Cfr13I GGNCC 1 cut(s) 41
CviAII CATG 4 cut(s) 38, 77, 124, 148
CviJI RGCY 2 cut(s) 19, 52
CviKI_1 RGCY 2 cut(s) 19, 52
Eco47I GGWCC 1 cut(s) 41
FaeI CATG 4 cut(s) 41, 80, 127, 151
FaiI YATR 5 cut(s) 39, 78, 125, 149, 229
FatI CATG 4 cut(s) 37, 76, 123, 147
Fnu4HI GCNGC 4 cut(s) 5, 35, 114, 208
Fsp4HI GCNGC 4 cut(s) 5, 35, 114, 208
GlaI GCGC 1 cut(s) 206
GluI GCNGC 4 cut(s) 5, 35, 114, 208
GsaI CCCAGC 1 cut(s) 144
HhaI GCGC 1 cut(s) 207
Hin1II CATG 4 cut(s) 41, 80, 127, 151
Hin6I GCGC 1 cut(s) 205
HinP1I GCGC 1 cut(s) 205
Hpy166II GTNNAC 1 cut(s) 135
Hpy8I GTNNAC 1 cut(s) 135
HpyAV CCTTC 4 cut(s) 20, 24, 171, 181
HpyCH4V TGCA 7 cut(s) 4, 64, 76, 101, 135, 147, 210
Hsp92II CATG 4 cut(s) 41, 80, 127, 151
HspAI GCGC 1 cut(s) 205
LpnPI CCDG 7 cut(s) 43, 80, 102, 126, 151, 196, 208
Lsp1109I GCAGC 3 cut(s) 16, 46, 194
MhlI GDGCHC 4 cut(s) 91, 137, 162, 219
NlaIII CATG 4 cut(s) 41, 80, 127, 151
NlaIV GGNNCC 1 cut(s) 43
NmeAIII GCCGAG 4 cut(s) 33, 70, 141, 198
NspI RCATGY 1 cut(s) 151
PkrI GCNGC 4 cut(s) 6, 36, 115, 209
PspFI CCCAGC 1 cut(s) 140
PspN4I GGNNCC 1 cut(s) 43
PspPI GGNCC 1 cut(s) 41
PstI CTGCAG 1 cut(s) 212
SatI GCNGC 4 cut(s) 5, 35, 114, 208
Sau96I GGNCC 1 cut(s) 41
SduI GDGCHC 4 cut(s) 91, 137, 162, 219
SetI ASST 3 cut(s) 134, 182, 204
SfcI CTRYAG 1 cut(s) 208
SinI GGWCC 1 cut(s) 41
SsiI CCGC 1 cut(s) 113
TauI GCSGC 1 cut(s) 116
TscAI CASTG 2 cut(s) 71, 142
TseI GCWGC 3 cut(s) 4, 34, 207
TspDTI ATGAA 1 cut(s) 140
TspRI CASTG 2 cut(s) 71, 142
VneI GTGCAC 1 cut(s) 133
VpaK11BI GGWCC 1 cut(s) 41
XceI RCATGY 1 cut(s) 151
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.