RchiOBHm_Chr2g0137481
ERF Family

DNA RNA polymerases superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000385
Physical Location & Seq
Reverse (-)
55260551 .. 55262079
1529 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ50822

Sequence Viewer

Length: 1101 bp
ATGATAGAGGTGGAGAGCCTAAAGGACCGAGTTGTGGCCCTTGAAAAATGTAAAGCTCGAGGAAGCGGAAGGGAGAGAGATGAGGAAGAAACTCCCGTTCCGAATGAGCAAATGGGGGCAATGAGTGATGCCCTTGACACACTCCAGGTGACGGTGGACAATATGGCAGAAGATGTCCGAGCCACCATTGATGCATTCAGGAACGAGCTGGTGGAGATGAGTACCAAGCTCAACCTGACCATCCGTGCGATGGGAAACCAACTTGTGACGGACTACAGAAAGGTAAAGATACCAGAACCTCAAGCATTTGGAGGGGCGCGAGATGCCAAGGAGCTTGAGAATTACTTATTTGATATGGAGCAATACTTCCGAGCAGTGAAGCCAGACTCGGAAGAGGTGAAGGTGAACATGGCAACAATGTATTTGTCGGGAGACCCAAAACTATGGTGGAGAACCAAGTATAATGACATCCAAAGGGGAGTATGCACCATTGACACTTGGGAAGACCATAAGAAGGAGCTCAAGGCTCAGTTCTTCCCCGAGAATGTTGAATACATTGCCAGACGACAACTAAGGGAGCTCAAGCACACCAACAACATCCGAGACTTTGTGAACAAGTTCTCTATGCTCATGCTTGACATCTCGGATATGTCAGAGAAGGATCAGCTGTTCTATTTCCTTGAAGGCTTAAAGCCATGGGCGAGGACAGAACTTCAGCGGCAGAGGGTCCAAGATTTGGCCTCCGCACAAGCTGTTGCTGAAAGGTTGACTGACTACACATTCGAAGAGAACTCTTCTAAGAAAACTCAGCCGTTTTCGAATGCAAATATCAACAGAAATGTAAGGCCCGGACCGAGTAGAAGTGGGGGAGCGGAGTCCAAATTTTCCAACTCAGGAGGAGGGGACAGGAGAACAGTGAACGCGAGGGACACGGCAACGTCCAAGCTTGTTGCCTCGACAGGGGTCTTCACCCCTCGACCTTTTAATCCCTTGGGCTATGCTCCAAAACCACTAGCATGCCTCTTATGCAGAGGACCTCATAAAGTGAATGAATGCCCTCATAAGACTGCTCTCTCTGCTCTACAGGCTCATATTCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Asp_protease_2 RVT_1 Retrotrans_gag gag-asp_proteas

Protein Analysis

366

Amino Acids

41.64

Weight (kDa)

6.98

Isoelectric Point (pI)

45.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ty3_capsid PF19259 97 - 269 1.1e-07 Ty3 transposon capsid-like protein
Retrotrans_gag PF03732 137 - 232 2.1e-15 Retrotransposon gag protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000385)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g23713 FvH4_1g25744 FvH4_2g00261 FvH4_2g00262 FvH4_2g15681 FvH4_2g17851 FvH4_2g35550 FvH4_3g05280 FvH4_3g10531 FvH4_3g25910 FvH4_3g28953 FvH4_3g33371 FvH4_3g33536 FvH4_3g36090 FvH4_4g03471 FvH4_4g03480 FvH4_4g06701 FvH4_4g19351 FvH4_4g34281 FvH4_5g00040 FvH4_5g03811 FvH4_5g03812 FvH4_5g11822 FvH4_5g30921 FvH4_5g31701 FvH4_6g12161 FvH4_6g15222 FvH4_6g15223 FvH4_6g17701 FvH4_6g17710 FvH4_6g19301 FvH4_6g33011 FvH4_6g34501 FvH4_6g50161 FvH4_7g04111 FvH4_7g04120 FvH4_7g04121 FvH4_7g04122 FvH4_7g04123 FvH4_7g28231 FvH4_c7g00010
malus_domestica MD12G1084200.v1.1
prunus_persica Prupe.1G206200_v2.0.a1 Prupe.8G085600_v2.0.a1
pyrus_communis pycom01g11080 pycom02g20500 pycom09g18370 pycom12555g00210 pycom13g23120 pycom14g10590 pycom16g17620 pycom16g22750
rosa_chinensis RchiOBHm_Chr2g0137481 RchiOBHm_Chr6g0251961 RchiOBHm_Chr7g0185821
rosa_laevigata RLG00000005585 RLG00000010281 RLG00000010912 RLG00000030342 RLG00000034281
rosa_multiflora Rmu_sc0000096.1_g000010 Rmu_sc0002481.1_g000045 Rmu_sc0003598.1_g000009 Rmu_sc0003863.1_g000019 Rmu_sc0003973.1_g000002 Rmu_sc0004823.1_g000050 Rmu_sc0005621.1_g000007 Rmu_sc0006537.1_g000030 Rmu_sc0006608.1_g000014 Rmu_sc0008506.1_g000007 Rmu_sc0014428.1_g000001 Rmu_sc0035437.1_g000001 Rmu_ssc0000396.1_g000022
rosa_roxburghii Rroxscaffold_175G00432300 Rroxscaffold_17G00435390 Rroxscaffold_27G00446590 Rroxscaffold_29G00441820 Rroxscaffold_31G00438110 Rroxscaffold_32G00442750 Rroxscaffold_33G00439810 Rroxscaffold_37G00445160 Rroxscaffold_4G00306500 Rroxscaffold_4G00327700 Rroxscaffold_4G00332630 Rroxscaffold_52G00439360 Rroxscaffold_63G00444420 Rroxscaffold_76G00448580 Rroxscaffold_7G00156270
rosa_rugosa Rorug03G0295200
rosa_samantha Rh1BG433700 Rh1CG115400 Rh2AG676300 Rh2CG341800 Rh2DG381400 Rh3BG370100 Rh3BG370200 Rh4AG441600 Rh4BG076500 Rh4BG107400 Rh5BG005600 Rh6BG010100 Rh7BG000200
rosa_wichuraiana Rw0G003820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 736
AccBSI CCGCTC 1 cut(s) 872
AccII CGCG 2 cut(s) 319, 923
AciI CCGC 4 cut(s) 66, 718, 744, 872
AclWI GGATC 1 cut(s) 669
AcsI RAATTY 1 cut(s) 881
AcuI CTGAAG 1 cut(s) 698
AfaI GTAC 1 cut(s) 223
AfiI CCNNNNNNNGG 6 cut(s) 34, 151, 250, 514, 736, 960
AgsI TTSAA 4 cut(s) 44, 551, 683, 1097
AjnI CCWGG 1 cut(s) 144
AloI GAACNNNNNNTCC 2 cut(s) 653, 685
AluBI AGCT 9 cut(s) 56, 208, 229, 334, 520, 580, 667, 752, 946
AluI AGCT 9 cut(s) 56, 208, 229, 334, 520, 580, 667, 752, 946
Alw21I GWGCWC 2 cut(s) 522, 582
Alw26I GTCTC 2 cut(s) 426, 597
AlwI GGATC 1 cut(s) 669
Ama87I CYCGRG 2 cut(s) 57, 539
AoxI GGCC 3 cut(s) 36, 738, 845
ApoI RAATTY 1 cut(s) 881
ArsI GACNNNNNNTTYG 2 cut(s) 764, 796
Asp700I GAANNNNTTC 1 cut(s) 617
AspLEI GCGC 1 cut(s) 319
AspS9I GGNCC 6 cut(s) 25, 37, 727, 846, 851, 1034
AsuC2I CCSGG 1 cut(s) 849
AsuHPI GGTGA 4 cut(s) 160, 409, 415, 961
AsuII TTCGAA 2 cut(s) 783, 818
AvaI CYCGRG 2 cut(s) 57, 539
AvaII GGWCC 4 cut(s) 25, 727, 851, 1034
BanII GRGCYC 2 cut(s) 522, 582
BbsI GAAGAC 2 cut(s) 510, 958
Bbv12I GWGCWC 2 cut(s) 522, 582
BccI CCATC 2 cut(s) 244, 248
BceAI ACGGC 2 cut(s) 796, 948
BciT130I CCWGG 1 cut(s) 146
BcnI CCSGG 1 cut(s) 849
BcoDI GTCTC 2 cut(s) 426, 597
BfaI CTAG 1 cut(s) 1013
BfmI CTRYAG 2 cut(s) 274, 1082
BisI GCNGC 1 cut(s) 719
BlsI GCNGC 1 cut(s) 720
Bme1390I CCNGG 2 cut(s) 146, 849
Bme18I GGWCC 4 cut(s) 25, 727, 851, 1034
BmeT110I CYCGRG 2 cut(s) 57, 539
BmgT120I GGNCC 6 cut(s) 25, 37, 727, 846, 851, 1034
BmiI GGNNCC 1 cut(s) 728
BmrFI CCNGG 2 cut(s) 146, 849
BmsI GCATC 3 cut(s) 118, 181, 313
BoxI GACNNNNGTC 1 cut(s) 962
BpiI GAAGAC 2 cut(s) 510, 958
BpmI CTGGAG 1 cut(s) 128
Bpu14I TTCGAA 2 cut(s) 783, 818
BpuEI CTTGAG 4 cut(s) 285, 356, 506, 566
BpuMI CCSGG 1 cut(s) 849
BsaI GGTCTC 1 cut(s) 426
BsaJI CCNNGG 3 cut(s) 327, 695, 990
Bsc4I CCNNNNNNNGG 6 cut(s) 34, 151, 250, 514, 736, 960
Bse3DI GCAATG 2 cut(s) 126, 555
BseBI CCWGG 1 cut(s) 146
BseDI CCNNGG 3 cut(s) 327, 695, 990
BseGI GGATG 3 cut(s) 240, 468, 597
BseLI CCNNNNNNNGG 6 cut(s) 34, 151, 250, 514, 736, 960
BseMI GCAATG 2 cut(s) 126, 555
BseMII CTCAG 3 cut(s) 542, 821, 906
BseRI GAGGAG 1 cut(s) 912
Bsh1236I CGCG 2 cut(s) 319, 923
BshFI GGCC 3 cut(s) 38, 740, 847
BsiHKAI GWGCWC 2 cut(s) 522, 582
BsiHKCI CYCGRG 2 cut(s) 57, 539
BsiSI CCGG 1 cut(s) 849
BslFI GGGAC 2 cut(s) 917, 941
BslI CCNNNNNNNGG 6 cut(s) 34, 151, 250, 514, 736, 960
BsmAI GTCTC 2 cut(s) 426, 597
BsmFI GGGAC 2 cut(s) 917, 941
BsmI GAATGC 3 cut(s) 194, 826, 1058
BsnI GGCC 3 cut(s) 38, 740, 847
Bso31I GGTCTC 1 cut(s) 426
BsoBI CYCGRG 2 cut(s) 57, 539
Bsp119I TTCGAA 2 cut(s) 783, 818
Bsp1286I GDGCHC 2 cut(s) 522, 582
Bsp143I GATC 1 cut(s) 661
Bsp19I CCATGG 1 cut(s) 695
BspACI CCGC 4 cut(s) 66, 718, 744, 872
BspANI GGCC 3 cut(s) 38, 740, 847
BspCNI CTCAG 3 cut(s) 541, 820, 905
BspFNI CGCG 2 cut(s) 319, 923
BspLI GGNNCC 1 cut(s) 728
BspPI GGATC 1 cut(s) 669
BspT104I TTCGAA 2 cut(s) 783, 818
BspTNI GGTCTC 1 cut(s) 426
BsrBI CCGCTC 1 cut(s) 872
BsrDI GCAATG 2 cut(s) 126, 555
BssECI CCNNGG 3 cut(s) 327, 695, 990
BssMI GATC 1 cut(s) 661
BssT1I CCWWGG 3 cut(s) 327, 695, 990
Bst2UI CCWGG 1 cut(s) 146
Bst4CI ACNGT 2 cut(s) 154, 916
Bst6I CTCTTC 3 cut(s) 387, 780, 799
BstBI TTCGAA 2 cut(s) 783, 818
BstC8I GCNNGC 1 cut(s) 1018
BstDEI CTNAG 5 cut(s) 528, 572, 798, 807, 892
BstDSI CCRYGG 1 cut(s) 695
BstF5I GGATG 3 cut(s) 240, 468, 597
BstFNI CGCG 2 cut(s) 319, 923
BstHHI GCGC 1 cut(s) 319
BstKTI GATC 1 cut(s) 664
BstMAI GTCTC 2 cut(s) 426, 597
BstMBI GATC 1 cut(s) 661
BstMWI GCNNNNNNNGC 4 cut(s) 323, 1026, 1076, 1085
BstNI CCWGG 1 cut(s) 146
BstNSI RCATGY 1 cut(s) 1020
BstPAI GACNNNNGTC 1 cut(s) 962
BstSCI CCNGG 2 cut(s) 144, 847
BstSFI CTRYAG 2 cut(s) 274, 1082
BstUI CGCG 2 cut(s) 319, 923
BstV2I GAAGAC 2 cut(s) 510, 958
BstXI CCANNNNNNTGG 1 cut(s) 444
BsuRI GGCC 3 cut(s) 38, 740, 847
BtgI CCRYGG 1 cut(s) 695
BtgZI GCGATG 1 cut(s) 263
BtsCI GGATG 3 cut(s) 240, 468, 597
BtsI GCAGTG 1 cut(s) 381
BtsIMutI CAGTG 2 cut(s) 381, 921
Cac8I GCNNGC 1 cut(s) 1018
CfoI GCGC 1 cut(s) 319
Cfr13I GGNCC 6 cut(s) 25, 37, 727, 846, 851, 1034
CpoI CGGWCCG 1 cut(s) 851
Csp6I GTAC 1 cut(s) 222
CspI CGGWCCG 1 cut(s) 851
CviAII CATG 4 cut(s) 409, 631, 696, 1017
CviQI GTAC 1 cut(s) 222
DdeI CTNAG 5 cut(s) 528, 572, 798, 807, 892
DpnI GATC 1 cut(s) 663
DpnII GATC 1 cut(s) 661
Eam1104I CTCTTC 3 cut(s) 387, 780, 799
EarI CTCTTC 3 cut(s) 387, 780, 799
Ecl136II GAGCTC 2 cut(s) 520, 580
Eco130I CCWWGG 3 cut(s) 327, 695, 990
Eco24I GRGCYC 2 cut(s) 522, 582
Eco31I GGTCTC 1 cut(s) 426
Eco47I GGWCC 4 cut(s) 25, 727, 851, 1034
Eco53kI GAGCTC 2 cut(s) 520, 580
Eco57I CTGAAG 1 cut(s) 698
Eco88I CYCGRG 2 cut(s) 57, 539
EcoICRI GAGCTC 2 cut(s) 520, 580
EcoO109I RGGNCCY 1 cut(s) 1034
EcoRII CCWGG 1 cut(s) 144
EcoT14I CCWWGG 3 cut(s) 327, 695, 990
EcoT22I ATGCAT 1 cut(s) 196
EcoT38I GRGCYC 2 cut(s) 522, 582
ErhI CCWWGG 3 cut(s) 327, 695, 990
FaeI CATG 4 cut(s) 412, 634, 699, 1020
FaqI GGGAC 2 cut(s) 917, 941
FatI CATG 4 cut(s) 408, 630, 695, 1016
Fnu4HI GCNGC 1 cut(s) 719
FokI GGATG 3 cut(s) 227, 455, 584
FriOI GRGCYC 2 cut(s) 522, 582
Fsp4HI GCNGC 1 cut(s) 719
FspBI CTAG 1 cut(s) 1013
GlaI GCGC 1 cut(s) 318
GluI GCNGC 1 cut(s) 719
GsuI CTGGAG 1 cut(s) 128
HaeIII GGCC 3 cut(s) 38, 740, 847
HapII CCGG 1 cut(s) 849
HhaI GCGC 1 cut(s) 319
Hin1II CATG 4 cut(s) 412, 634, 699, 1020
Hin6I GCGC 1 cut(s) 317
HinP1I GCGC 1 cut(s) 317
HincII GTYRAC 1 cut(s) 768
HindII GTYRAC 1 cut(s) 768
HindIII AAGCTT 1 cut(s) 944
HinfI GANTC 2 cut(s) 386, 875
HpaII CCGG 1 cut(s) 849
HphI GGTGA 4 cut(s) 160, 409, 415, 961
Hpy166II GTNNAC 5 cut(s) 157, 406, 613, 768, 919
Hpy188I TCNGA 7 cut(s) 102, 179, 371, 391, 602, 646, 655
Hpy188III TCNNGA 3 cut(s) 199, 429, 894
Hpy8I GTNNAC 5 cut(s) 157, 406, 613, 768, 919
HpyAV CCTTC 5 cut(s) 63, 394, 508, 652, 677
HpyCH4III ACNGT 2 cut(s) 154, 916
HpyCH4IV ACGT 1 cut(s) 938
HpyCH4V TGCA 4 cut(s) 194, 486, 824, 1029
HpyF10VI GCNNNNNNNGC 4 cut(s) 323, 1026, 1076, 1085
HpyF3I CTNAG 5 cut(s) 528, 572, 798, 807, 892
HpySE526I ACGT 1 cut(s) 938
Hsp92II CATG 4 cut(s) 412, 634, 699, 1020
HspAI GCGC 1 cut(s) 317
Kzo9I GATC 1 cut(s) 661
LmnI GCTCC 6 cut(s) 331, 358, 517, 577, 869, 1006
LweI GCATC 3 cut(s) 118, 181, 313
MaeI CTAG 1 cut(s) 1013
MaeII ACGT 1 cut(s) 938
MaeIII GTNAC 2 cut(s) 148, 265
MalI GATC 1 cut(s) 663
MbiI CCGCTC 1 cut(s) 872
MboI GATC 1 cut(s) 661
MboII GAAGA 8 cut(s) 98, 182, 404, 515, 526, 786, 797, 958
MhlI GDGCHC 2 cut(s) 522, 582
MluCI AATT 2 cut(s) 340, 881
MlyI GAGTC 2 cut(s) 380, 884
MmeI TCCRAC 1 cut(s) 912
Mph1103I ATGCAT 1 cut(s) 196
MroXI GAANNNNTTC 1 cut(s) 617
MseI TTAA 2 cut(s) 689, 984
MslI CAYNNNNRTG 1 cut(s) 1015
MspA1I CMGCKG 2 cut(s) 667, 718
MspI CCGG 1 cut(s) 849
MspR9I CCNGG 2 cut(s) 146, 849
Mva1269I GAATGC 3 cut(s) 194, 826, 1058
MvaI CCWGG 1 cut(s) 146
MvnI CGCG 2 cut(s) 319, 923
MwoI GCNNNNNNNGC 4 cut(s) 323, 1026, 1076, 1085
NciI CCSGG 1 cut(s) 849
NcoI CCATGG 1 cut(s) 695
NdeII GATC 1 cut(s) 661
NlaIII CATG 4 cut(s) 412, 634, 699, 1020
NlaIV GGNNCC 1 cut(s) 728
NmuCI GTSAC 2 cut(s) 148, 265
NsiI ATGCAT 1 cut(s) 196
NspI RCATGY 1 cut(s) 1020
NspV TTCGAA 2 cut(s) 783, 818
PaeI GCATGC 1 cut(s) 1020
PaeR7I CTCGAG 1 cut(s) 57
PctI GAATGC 3 cut(s) 194, 826, 1058
PdmI GAANNNNTTC 1 cut(s) 617
PflMI CCANNNNNTGG 1 cut(s) 736
PkrI GCNGC 1 cut(s) 720
PleI GAGTC 2 cut(s) 380, 883
PpsI GAGTC 2 cut(s) 380, 883
PpuMI RGGWCCY 1 cut(s) 1034
PshAI GACNNNNGTC 1 cut(s) 962
Psp124BI GAGCTC 2 cut(s) 522, 582
Psp5II RGGWCCY 1 cut(s) 1034
Psp6I CCWGG 1 cut(s) 144
PspGI CCWGG 1 cut(s) 144
PspN4I GGNNCC 1 cut(s) 728
PspPI GGNCC 6 cut(s) 25, 37, 727, 846, 851, 1034
PspPPI RGGWCCY 1 cut(s) 1034
PspXI VCTCGAGB 1 cut(s) 57
PvuII CAGCTG 1 cut(s) 667
RsaI GTAC 1 cut(s) 223
RsaNI GTAC 1 cut(s) 222
RseI CAYNNNNRTG 1 cut(s) 1015
Rsr2I CGGWCCG 1 cut(s) 851
RsrII CGGWCCG 1 cut(s) 851
SacI GAGCTC 2 cut(s) 522, 582
SaqAI TTAA 2 cut(s) 689, 984
SatI GCNGC 1 cut(s) 719
Sau3AI GATC 1 cut(s) 661
Sau96I GGNCC 6 cut(s) 25, 37, 727, 846, 851, 1034
SchI GAGTC 2 cut(s) 380, 884
ScrFI CCNGG 2 cut(s) 146, 849
SduI GDGCHC 2 cut(s) 522, 582
SfaNI GCATC 3 cut(s) 118, 181, 313
SfcI CTRYAG 2 cut(s) 274, 1082
Sfr274I CTCGAG 1 cut(s) 57
SfuI TTCGAA 2 cut(s) 783, 818
SinI GGWCC 4 cut(s) 25, 727, 851, 1034
SlaI CTCGAG 1 cut(s) 57
SmiMI CAYNNNNRTG 1 cut(s) 1015
SmlI CTYRAG 5 cut(s) 57, 300, 335, 521, 581
SmoI CTYRAG 5 cut(s) 57, 300, 335, 521, 581
SphI GCATGC 1 cut(s) 1020
Sse9I AATT 2 cut(s) 340, 881
SsiI CCGC 4 cut(s) 66, 718, 744, 872
SspMI CTAG 1 cut(s) 1013
SstI GAGCTC 2 cut(s) 522, 582
StyD4I CCNGG 2 cut(s) 144, 847
StyI CCWWGG 3 cut(s) 327, 695, 990
TaaI ACNGT 2 cut(s) 154, 916
TaiI ACGT 1 cut(s) 941
TaqI TCGA 5 cut(s) 58, 783, 818, 956, 976
TaqII GACCGA 2 cut(s) 42, 868
TasI AATT 2 cut(s) 340, 881
TauI GCSGC 1 cut(s) 721
Tru1I TTAA 2 cut(s) 689, 984
Tru9I TTAA 2 cut(s) 689, 984
TscAI CASTG 2 cut(s) 381, 921
TseFI GTSAC 2 cut(s) 148, 265
Tsp45I GTSAC 2 cut(s) 148, 265
TspDTI ATGAA 1 cut(s) 1065
TspGWI ACGGA 2 cut(s) 233, 284
TspRI CASTG 2 cut(s) 381, 921
Van91I CCANNNNNTGG 1 cut(s) 736
VpaK11BI GGWCC 4 cut(s) 25, 727, 851, 1034
XapI RAATTY 1 cut(s) 881
XceI RCATGY 1 cut(s) 1020
XcmI CCANNNNNNNNNTGG 2 cut(s) 247, 444
XhoI CTCGAG 1 cut(s) 57
XmnI GAANNNNTTC 1 cut(s) 617
XspI CTAG 1 cut(s) 1013
Zsp2I ATGCAT 1 cut(s) 196
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.