RLG00000034281

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000385
Physical Location & Seq
Forward (+)
39851245 .. 39851960
716 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000034281

Sequence Viewer

Length: 465 bp
ATGTATGATTTCACGCGGCCAGTTGATGGCGGGACACGCATCGAGGATGAGGAGAAGATGCACCTCTATCTATGGAGTCATGGGCACTCTAAGGAGGAGATAGAGATAGCAGCTGCCCACATGGTGAAGCTCAAGTCAGGGCAGCATGAAAAGGTGAACAAACCGAACCAGCAACAAGATGTCATTGTCATAGACGACAATCTTAGAGACAAGGGTGGACCTGTGCCCATGGTCGACGAGGAAGTCATGAGCGGACCTGTGCCTATGACTGAGGAAGATGCTGATGAGGAGGCCATTGAGGCCCACTCCTTGAAAAACTCGCTGGAGGAAGCGAGGTTTGACCTTGAGAGAGATGAGGTCGAGACGTTGGTGAAGACAAAGGCAGGAGGCCTTAATGATTCAGCAAGTAGGGTCAGCCAACAAGGGGCAACGGAAGGTGCCAAGGATCCTACTCAAGGAGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

155

Amino Acids

17.02

Weight (kDa)

4.61

Isoelectric Point (pI)

61.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000385)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g23713 FvH4_1g25744 FvH4_2g00261 FvH4_2g00262 FvH4_2g15681 FvH4_2g17851 FvH4_2g35550 FvH4_3g05280 FvH4_3g10531 FvH4_3g25910 FvH4_3g28953 FvH4_3g33371 FvH4_3g33536 FvH4_3g36090 FvH4_4g03471 FvH4_4g03480 FvH4_4g06701 FvH4_4g19351 FvH4_4g34281 FvH4_5g00040 FvH4_5g03811 FvH4_5g03812 FvH4_5g11822 FvH4_5g30921 FvH4_5g31701 FvH4_6g12161 FvH4_6g15222 FvH4_6g15223 FvH4_6g17701 FvH4_6g17710 FvH4_6g19301 FvH4_6g33011 FvH4_6g34501 FvH4_6g50161 FvH4_7g04111 FvH4_7g04120 FvH4_7g04121 FvH4_7g04122 FvH4_7g04123 FvH4_7g28231 FvH4_c7g00010
malus_domestica MD12G1084200.v1.1
prunus_persica Prupe.1G206200_v2.0.a1 Prupe.8G085600_v2.0.a1
pyrus_communis pycom01g11080 pycom02g20500 pycom09g18370 pycom12555g00210 pycom13g23120 pycom14g10590 pycom16g17620 pycom16g22750
rosa_chinensis RchiOBHm_Chr2g0137481 RchiOBHm_Chr6g0251961 RchiOBHm_Chr7g0185821
rosa_laevigata RLG00000005585 RLG00000010281 RLG00000010912 RLG00000030342 RLG00000034281
rosa_multiflora Rmu_sc0000096.1_g000010 Rmu_sc0002481.1_g000045 Rmu_sc0003598.1_g000009 Rmu_sc0003863.1_g000019 Rmu_sc0003973.1_g000002 Rmu_sc0004823.1_g000050 Rmu_sc0005621.1_g000007 Rmu_sc0006537.1_g000030 Rmu_sc0006608.1_g000014 Rmu_sc0008506.1_g000007 Rmu_sc0014428.1_g000001 Rmu_sc0035437.1_g000001 Rmu_ssc0000396.1_g000022
rosa_roxburghii Rroxscaffold_175G00432300 Rroxscaffold_17G00435390 Rroxscaffold_27G00446590 Rroxscaffold_29G00441820 Rroxscaffold_31G00438110 Rroxscaffold_32G00442750 Rroxscaffold_33G00439810 Rroxscaffold_37G00445160 Rroxscaffold_4G00306500 Rroxscaffold_4G00327700 Rroxscaffold_4G00332630 Rroxscaffold_52G00439360 Rroxscaffold_63G00444420 Rroxscaffold_76G00448580 Rroxscaffold_7G00156270
rosa_rugosa Rorug03G0295200
rosa_samantha Rh1BG433700 Rh1CG115400 Rh2AG676300 Rh2CG341800 Rh2DG381400 Rh3BG370100 Rh3BG370200 Rh4AG441600 Rh4BG076500 Rh4BG107400 Rh5BG005600 Rh6BG010100 Rh7BG000200
rosa_wichuraiana Rw0G003820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 242
AccB1I GGYRCC 1 cut(s) 437
AccB7I CCANNNNNTGG 1 cut(s) 26
AccBSI CCGCTC 1 cut(s) 252
AccI GTMKAC 1 cut(s) 234
AccII CGCG 1 cut(s) 16
AciI CCGC 3 cut(s) 16, 30, 252
AclWI GGATC 2 cut(s) 440, 453
AcoI YGGCCR 1 cut(s) 17
AdeI CACNNNGTG 1 cut(s) 124
AfiI CCNNNNNNNGG 3 cut(s) 26, 424, 455
AgsI TTSAA 1 cut(s) 313
AluBI AGCT 2 cut(s) 113, 130
AluI AGCT 2 cut(s) 113, 130
Alw26I GTCTC 2 cut(s) 201, 356
AlwI GGATC 2 cut(s) 440, 453
AoxI GGCC 4 cut(s) 17, 291, 300, 388
ApeKI GCWGC 3 cut(s) 110, 113, 142
AspS9I GGNCC 3 cut(s) 218, 254, 301
AsuHPI GGTGA 3 cut(s) 136, 166, 382
AvaII GGWCC 2 cut(s) 218, 254
BaeGI GKGCMC 2 cut(s) 87, 228
BamHI GGATCC 1 cut(s) 445
BanI GGYRCC 1 cut(s) 437
BbsI GAAGAC 1 cut(s) 380
BbvI GCAGC 3 cut(s) 100, 122, 154
BccI CCATC 1 cut(s) 20
BcoDI GTCTC 2 cut(s) 201, 356
BglI GCCNNNNNGGC 1 cut(s) 299
BisI GCNGC 4 cut(s) 17, 111, 114, 143
BlsI GCNGC 4 cut(s) 18, 112, 115, 144
Bme18I GGWCC 2 cut(s) 218, 254
BmgT120I GGNCC 3 cut(s) 218, 254, 301
BmiI GGNNCC 2 cut(s) 439, 447
BmsI GCATC 3 cut(s) 48, 48, 268
BpiI GAAGAC 1 cut(s) 380
BplI GAGNNNNNCTC 2 cut(s) 290, 322
BpmI CTGGAG 1 cut(s) 344
BpuEI CTTGAG 3 cut(s) 116, 365, 438
BsaJI CCNNGG 2 cut(s) 228, 441
Bsc4I CCNNNNNNNGG 3 cut(s) 26, 424, 455
Bse1I ACTGG 1 cut(s) 20
BseDI CCNNGG 2 cut(s) 228, 441
BseGI GGATG 1 cut(s) 52
BseLI CCNNNNNNNGG 3 cut(s) 26, 424, 455
BseMII CTCAG 1 cut(s) 261
BseNI ACTGG 1 cut(s) 20
BseRI GAGGAG 3 cut(s) 65, 110, 302
BseSI GKGCMC 2 cut(s) 87, 228
BseXI GCAGC 3 cut(s) 100, 122, 154
Bsh1236I CGCG 1 cut(s) 16
BshFI GGCC 4 cut(s) 19, 293, 302, 390
BshNI GGYRCC 1 cut(s) 437
BslFI GGGAC 1 cut(s) 46
BslI CCNNNNNNNGG 3 cut(s) 26, 424, 455
BsmAI GTCTC 2 cut(s) 201, 356
BsmBI CGTCTC 1 cut(s) 356
BsmFI GGGAC 1 cut(s) 46
BsnI GGCC 4 cut(s) 19, 293, 302, 390
Bsp1286I GDGCHC 2 cut(s) 87, 228
Bsp143I GATC 1 cut(s) 445
Bsp19I CCATGG 1 cut(s) 228
BspACI CCGC 3 cut(s) 16, 30, 252
BspANI GGCC 4 cut(s) 19, 293, 302, 390
BspCNI CTCAG 1 cut(s) 262
BspFNI CGCG 1 cut(s) 16
BspHI TCATGA 1 cut(s) 246
BspLI GGNNCC 2 cut(s) 439, 447
BspPI GGATC 2 cut(s) 440, 453
BspT107I GGYRCC 1 cut(s) 437
BsrBI CCGCTC 1 cut(s) 252
BsrI ACTGG 1 cut(s) 20
BssECI CCNNGG 2 cut(s) 228, 441
BssMI GATC 1 cut(s) 445
BssT1I CCWWGG 2 cut(s) 228, 441
BstDEI CTNAG 3 cut(s) 90, 203, 270
BstDSI CCRYGG 1 cut(s) 228
BstENI CCTNNNNNAGG 1 cut(s) 453
BstF5I GGATG 1 cut(s) 52
BstFNI CGCG 1 cut(s) 16
BstKTI GATC 1 cut(s) 448
BstMAI GTCTC 2 cut(s) 201, 356
BstMBI GATC 1 cut(s) 445
BstMWI GCNNNNNNNGC 2 cut(s) 36, 299
BstSLI GKGCMC 2 cut(s) 87, 228
BstUI CGCG 1 cut(s) 16
BstV1I GCAGC 3 cut(s) 100, 122, 154
BstV2I GAAGAC 1 cut(s) 380
BstX2I RGATCY 1 cut(s) 445
BstYI RGATCY 1 cut(s) 445
BsuRI GGCC 4 cut(s) 19, 293, 302, 390
BtgI CCRYGG 1 cut(s) 228
BtsCI GGATG 1 cut(s) 52
CciI TCATGA 1 cut(s) 246
Cfr13I GGNCC 3 cut(s) 218, 254, 301
CviAII CATG 5 cut(s) 80, 121, 146, 229, 247
CviJI RGCY 8 cut(s) 19, 113, 130, 293, 302, 390, 417, 462
CviKI_1 RGCY 8 cut(s) 19, 113, 130, 293, 302, 390, 417, 462
DdeI CTNAG 3 cut(s) 90, 203, 270
DpnI GATC 1 cut(s) 447
DpnII GATC 1 cut(s) 445
DraIII CACNNNGTG 1 cut(s) 124
DrdI GACNNNNNNGTC 1 cut(s) 242
DseDI GACNNNNNNGTC 1 cut(s) 242
EaeI YGGCCR 1 cut(s) 17
Eco130I CCWWGG 2 cut(s) 228, 441
Eco147I AGGCCT 1 cut(s) 390
Eco47I GGWCC 2 cut(s) 218, 254
EcoNI CCTNNNNNAGG 1 cut(s) 453
EcoT14I CCWWGG 2 cut(s) 228, 441
ErhI CCWWGG 2 cut(s) 228, 441
Esp3I CGTCTC 1 cut(s) 356
FaeI CATG 5 cut(s) 83, 124, 149, 232, 250
FaiI YATR 9 cut(s) 6, 73, 81, 122, 147, 191, 230, 248, 266
FaqI GGGAC 1 cut(s) 46
FatI CATG 5 cut(s) 79, 120, 145, 228, 246
FauI CCCGC 1 cut(s) 23
FblI GTMKAC 1 cut(s) 234
Fnu4HI GCNGC 4 cut(s) 17, 111, 114, 143
FokI GGATG 1 cut(s) 59
Fsp4HI GCNGC 4 cut(s) 17, 111, 114, 143
GluI GCNGC 4 cut(s) 17, 111, 114, 143
GsuI CTGGAG 1 cut(s) 344
HaeIII GGCC 4 cut(s) 19, 293, 302, 390
Hin1II CATG 5 cut(s) 83, 124, 149, 232, 250
HincII GTYRAC 1 cut(s) 235
HindII GTYRAC 1 cut(s) 235
HinfI GANTC 2 cut(s) 76, 398
HphI GGTGA 3 cut(s) 136, 166, 382
Hpy166II GTNNAC 3 cut(s) 157, 218, 235
Hpy188III TCNNGA 2 cut(s) 247, 361
Hpy8I GTNNAC 3 cut(s) 157, 218, 235
Hpy99I CGWCG 1 cut(s) 239
HpyAV CCTTC 1 cut(s) 428
HpyCH4IV ACGT 1 cut(s) 365
HpyCH4V TGCA 1 cut(s) 61
HpyF10VI GCNNNNNNNGC 2 cut(s) 36, 299
HpyF3I CTNAG 3 cut(s) 90, 203, 270
HpySE526I ACGT 1 cut(s) 365
Hsp92II CATG 5 cut(s) 83, 124, 149, 232, 250
Kzo9I GATC 1 cut(s) 445
LpnPI CCDG 7 cut(s) 33, 123, 182, 234, 270, 308, 369
Lsp1109I GCAGC 3 cut(s) 100, 122, 154
LweI GCATC 3 cut(s) 48, 48, 268
MaeII ACGT 1 cut(s) 365
MalI GATC 1 cut(s) 447
MbiI CCGCTC 1 cut(s) 252
MboI GATC 1 cut(s) 445
MboII GAAGA 3 cut(s) 67, 287, 385
MflI RGATCY 1 cut(s) 445
MhlI GDGCHC 2 cut(s) 87, 228
MlyI GAGTC 1 cut(s) 85
MseI TTAA 1 cut(s) 393
MspA1I CMGCKG 1 cut(s) 113
MvnI CGCG 1 cut(s) 16
MwoI GCNNNNNNNGC 2 cut(s) 36, 299
NcoI CCATGG 1 cut(s) 228
NdeII GATC 1 cut(s) 445
NlaIII CATG 5 cut(s) 83, 124, 149, 232, 250
NlaIV GGNNCC 2 cut(s) 439, 447
PagI TCATGA 1 cut(s) 246
PceI AGGCCT 1 cut(s) 390
PfeI GAWTC 1 cut(s) 398
PflMI CCANNNNNTGG 1 cut(s) 26
PkrI GCNGC 4 cut(s) 18, 112, 115, 144
PleI GAGTC 1 cut(s) 84
PpsI GAGTC 1 cut(s) 84
PspN4I GGNNCC 2 cut(s) 439, 447
PspPI GGNCC 3 cut(s) 218, 254, 301
PsuI RGATCY 1 cut(s) 445
PvuII CAGCTG 1 cut(s) 113
SalI GTCGAC 1 cut(s) 233
SaqAI TTAA 1 cut(s) 393
SatI GCNGC 4 cut(s) 17, 111, 114, 143
Sau3AI GATC 1 cut(s) 445
Sau96I GGNCC 3 cut(s) 218, 254, 301
SchI GAGTC 1 cut(s) 85
SduI GDGCHC 2 cut(s) 87, 228
SfaNI GCATC 3 cut(s) 48, 48, 268
SfiI GGCCNNNNNGGCC 1 cut(s) 299
SinI GGWCC 2 cut(s) 218, 254
SmlI CTYRAG 3 cut(s) 131, 344, 453
SmoI CTYRAG 3 cut(s) 131, 344, 453
SseBI AGGCCT 1 cut(s) 390
SsiI CCGC 3 cut(s) 16, 30, 252
StuI AGGCCT 1 cut(s) 390
StyI CCWWGG 2 cut(s) 228, 441
TaiI ACGT 1 cut(s) 368
TaqI TCGA 3 cut(s) 42, 234, 360
TauI GCSGC 1 cut(s) 19
TfiI GAWTC 1 cut(s) 398
Tru1I TTAA 1 cut(s) 393
Tru9I TTAA 1 cut(s) 393
TseI GCWGC 3 cut(s) 110, 113, 142
TspDTI ATGAA 1 cut(s) 162
TspGWI ACGGA 1 cut(s) 446
Van91I CCANNNNNTGG 1 cut(s) 26
VpaK11BI GGWCC 2 cut(s) 218, 254
XagI CCTNNNNNAGG 1 cut(s) 453
XmiI GTMKAC 1 cut(s) 234
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.