Rroxscaffold_4G00332630

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000385
Physical Location & Seq
Forward (+)
66877607 .. 66879413
1807 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00332630.1

Sequence Viewer

Length: 699 bp
ATGGCGGGTGGCAATGATACTTTGAAGGAGAGAGTGGCAAGGGTAGAGGAAATCCTTGGCATGCCGATCGAAGAATTAGAGGCAAGCTTAATTGTTCAAGTGGAACAATTGAAGCAAGAACTAGCATCAATGCATGTTGCATTCGATGGCCACGTGCACGAGATGGAAGAGAGGATGAAGTCGTCCATCCATGAGATTGAAGCCCTTTTGCAAGAGGTGGATGCAAAGTTTGAGGTTCTTGATGCCGACATTGGATTGCTAAAGCACTCTAGCATCAATGAAGGTGGGACAAGCACAAGAAATGGTGTTCCCAAGTCCTCCCGTACCCAATGGGGTGGACGGAGCTTGGCGTCGATACCCGATGGGGTAGAAGATGTGAGCCTCCCAGCACCCAATGGGGTGGAGGGGAGCTTGGCGTCGATACCCGATGGGGTAGAAGAAGTTAGCCTCCGCACCCAATGGGGTGGAGGGAGATGGGCGTCGATACCCGATGGGGTAGAAGATGTGAGCCTCCGGCACCCAATGGGGTGGACGGAGCTTGGCGTCGATACCCGATGGGGTAGAAGATGTGAGCCTCCCGTACCCAATGGTGGACGGAGCTTGGCGTCGATACCCGATGGGGTAGAAGATGTGAGCCTCCGTACCCAATGGGGTGGAGGGGAGCTTGGCGTCGATACCCGATGGGGTAGAAGAAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

232

Amino Acids

25.13

Weight (kDa)

4.77

Isoelectric Point (pI)

56.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000385)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g23713 FvH4_1g25744 FvH4_2g00261 FvH4_2g00262 FvH4_2g15681 FvH4_2g17851 FvH4_2g35550 FvH4_3g05280 FvH4_3g10531 FvH4_3g25910 FvH4_3g28953 FvH4_3g33371 FvH4_3g33536 FvH4_3g36090 FvH4_4g03471 FvH4_4g03480 FvH4_4g06701 FvH4_4g19351 FvH4_4g34281 FvH4_5g00040 FvH4_5g03811 FvH4_5g03812 FvH4_5g11822 FvH4_5g30921 FvH4_5g31701 FvH4_6g12161 FvH4_6g15222 FvH4_6g15223 FvH4_6g17701 FvH4_6g17710 FvH4_6g19301 FvH4_6g33011 FvH4_6g34501 FvH4_6g50161 FvH4_7g04111 FvH4_7g04120 FvH4_7g04121 FvH4_7g04122 FvH4_7g04123 FvH4_7g28231 FvH4_c7g00010
malus_domestica MD12G1084200.v1.1
prunus_persica Prupe.1G206200_v2.0.a1 Prupe.8G085600_v2.0.a1
pyrus_communis pycom01g11080 pycom02g20500 pycom09g18370 pycom12555g00210 pycom13g23120 pycom14g10590 pycom16g17620 pycom16g22750
rosa_chinensis RchiOBHm_Chr2g0137481 RchiOBHm_Chr6g0251961 RchiOBHm_Chr7g0185821
rosa_laevigata RLG00000005585 RLG00000010281 RLG00000010912 RLG00000030342 RLG00000034281
rosa_multiflora Rmu_sc0000096.1_g000010 Rmu_sc0002481.1_g000045 Rmu_sc0003598.1_g000009 Rmu_sc0003863.1_g000019 Rmu_sc0003973.1_g000002 Rmu_sc0004823.1_g000050 Rmu_sc0005621.1_g000007 Rmu_sc0006537.1_g000030 Rmu_sc0006608.1_g000014 Rmu_sc0008506.1_g000007 Rmu_sc0014428.1_g000001 Rmu_sc0035437.1_g000001 Rmu_ssc0000396.1_g000022
rosa_roxburghii Rroxscaffold_175G00432300 Rroxscaffold_17G00435390 Rroxscaffold_27G00446590 Rroxscaffold_29G00441820 Rroxscaffold_31G00438110 Rroxscaffold_32G00442750 Rroxscaffold_33G00439810 Rroxscaffold_37G00445160 Rroxscaffold_4G00306500 Rroxscaffold_4G00327700 Rroxscaffold_4G00332630 Rroxscaffold_52G00439360 Rroxscaffold_63G00444420 Rroxscaffold_76G00448580 Rroxscaffold_7G00156270
rosa_rugosa Rorug03G0295200
rosa_samantha Rh1BG433700 Rh1CG115400 Rh2AG676300 Rh2CG341800 Rh2DG381400 Rh3BG370100 Rh3BG370200 Rh4AG441600 Rh4BG076500 Rh4BG107400 Rh5BG005600 Rh6BG010100 Rh7BG000200
rosa_wichuraiana Rw0G003820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 516
AciI CCGC 2 cut(s) 5, 451
AcoI YGGCCR 1 cut(s) 148
AcvI CACGTG 1 cut(s) 154
AcyI GRCGYC 6 cut(s) 350, 416, 479, 543, 605, 669
AfaI GTAC 3 cut(s) 325, 582, 643
AfiI CCNNNNNNNGG 1 cut(s) 590
AgsI TTSAA 4 cut(s) 25, 98, 112, 200
AluBI AGCT 6 cut(s) 87, 345, 411, 538, 600, 664
AluI AGCT 6 cut(s) 87, 345, 411, 538, 600, 664
Alw21I GWGCWC 1 cut(s) 159
Alw44I GTGCAC 1 cut(s) 155
AoxI GGCC 1 cut(s) 148
ApaLI GTGCAC 1 cut(s) 155
BaeGI GKGCMC 1 cut(s) 159
BalI TGGCCA 1 cut(s) 150
BanI GGYRCC 1 cut(s) 516
BauI CACGAG 1 cut(s) 158
BbrPI CACGTG 1 cut(s) 154
Bbv12I GWGCWC 1 cut(s) 159
BcgI CGANNNNNNTGC 2 cut(s) 49, 83
BfaI CTAG 2 cut(s) 122, 270
BmiI GGNNCC 1 cut(s) 518
BmsI GCATC 4 cut(s) 134, 211, 232, 282
BsaAI YACGTR 1 cut(s) 154
BsaHI GRCGYC 6 cut(s) 350, 416, 479, 543, 605, 669
BsaJI CCNNGG 1 cut(s) 55
Bsc4I CCNNNNNNNGG 1 cut(s) 590
Bse3DI GCAATG 1 cut(s) 19
BseDI CCNNGG 1 cut(s) 55
BseGI GGATG 3 cut(s) 180, 186, 226
BseLI CCNNNNNNNGG 1 cut(s) 590
BseMI GCAATG 1 cut(s) 19
BseSI GKGCMC 1 cut(s) 159
BseYI CCCAGC 1 cut(s) 385
Bsh1285I CGRYCG 1 cut(s) 69
BshFI GGCC 1 cut(s) 150
BshNI GGYRCC 1 cut(s) 516
BsiEI CGRYCG 1 cut(s) 69
BsiHKAI GWGCWC 1 cut(s) 159
BsiSI CCGG 1 cut(s) 514
BslFI GGGAC 1 cut(s) 301
BslI CCNNNNNNNGG 1 cut(s) 590
BsmFI GGGAC 1 cut(s) 301
BsmI GAATGC 1 cut(s) 140
BsnI GGCC 1 cut(s) 150
Bsp1286I GDGCHC 1 cut(s) 159
Bsp143I GATC 1 cut(s) 66
BspACI CCGC 2 cut(s) 5, 451
BspANI GGCC 1 cut(s) 150
BspLI GGNNCC 1 cut(s) 518
BspT107I GGYRCC 1 cut(s) 516
BsrDI GCAATG 1 cut(s) 19
BssECI CCNNGG 1 cut(s) 55
BssMI GATC 1 cut(s) 66
BssNI GRCGYC 6 cut(s) 350, 416, 479, 543, 605, 669
BssSI CACGAG 1 cut(s) 158
BssT1I CCWWGG 1 cut(s) 55
Bst2BI CACGAG 1 cut(s) 158
Bst6I CTCTTC 1 cut(s) 162
BstACI GRCGYC 6 cut(s) 350, 416, 479, 543, 605, 669
BstBAI YACGTR 1 cut(s) 154
BstC8I GCNNGC 2 cut(s) 62, 85
BstF5I GGATG 3 cut(s) 180, 186, 226
BstKTI GATC 1 cut(s) 69
BstMBI GATC 1 cut(s) 66
BstMCI CGRYCG 1 cut(s) 69
BstNSI RCATGY 2 cut(s) 64, 137
BstSLI GKGCMC 1 cut(s) 159
BstXI CCANNNNNNTGG 5 cut(s) 335, 400, 464, 528, 653
BsuRI GGCC 1 cut(s) 150
BtsCI GGATG 3 cut(s) 180, 186, 226
Cac8I GCNNGC 2 cut(s) 62, 85
CseI GACGC 6 cut(s) 339, 405, 468, 532, 594, 658
Csp6I GTAC 3 cut(s) 324, 581, 642
CspCI CAANNNNNGTGG 2 cut(s) 265, 300
CviAII CATG 3 cut(s) 61, 134, 191
CviQI GTAC 3 cut(s) 324, 581, 642
DpnI GATC 1 cut(s) 68
DpnII GATC 1 cut(s) 66
EaeI YGGCCR 1 cut(s) 148
Eam1104I CTCTTC 1 cut(s) 162
EarI CTCTTC 1 cut(s) 162
Eco130I CCWWGG 1 cut(s) 55
Eco72I CACGTG 1 cut(s) 154
EcoT14I CCWWGG 1 cut(s) 55
EcoT22I ATGCAT 1 cut(s) 135
ErhI CCWWGG 1 cut(s) 55
FaeI CATG 3 cut(s) 64, 137, 194
FaiI YATR 3 cut(s) 62, 135, 192
FaqI GGGAC 1 cut(s) 301
FatI CATG 3 cut(s) 60, 133, 190
FokI GGATG 3 cut(s) 173, 187, 233
FspBI CTAG 2 cut(s) 122, 270
GsaI CCCAGC 1 cut(s) 389
HaeIII GGCC 1 cut(s) 150
HapII CCGG 1 cut(s) 514
HgaI GACGC 6 cut(s) 339, 405, 468, 532, 594, 658
Hin1I GRCGYC 6 cut(s) 350, 416, 479, 543, 605, 669
Hin1II CATG 3 cut(s) 64, 137, 194
HindIII AAGCTT 1 cut(s) 85
HpaII CCGG 1 cut(s) 514
Hpy166II GTNNAC 4 cut(s) 157, 338, 531, 593
Hpy188III TCNNGA 1 cut(s) 239
Hpy8I GTNNAC 4 cut(s) 157, 338, 531, 593
Hpy99I CGWCG 6 cut(s) 355, 421, 484, 548, 610, 674
HpyAV CCTTC 2 cut(s) 19, 275
HpyCH4IV ACGT 1 cut(s) 153
HpyCH4V TGCA 5 cut(s) 133, 140, 157, 211, 224
HpySE526I ACGT 1 cut(s) 153
Hsp92I GRCGYC 6 cut(s) 350, 416, 479, 543, 605, 669
Hsp92II CATG 3 cut(s) 64, 137, 194
Kzo9I GATC 1 cut(s) 66
LmnI GCTCC 5 cut(s) 342, 408, 535, 597, 661
LpnPI CCDG 2 cut(s) 399, 527
LweI GCATC 4 cut(s) 134, 211, 232, 282
MaeI CTAG 2 cut(s) 122, 270
MaeII ACGT 1 cut(s) 153
MalI GATC 1 cut(s) 68
MboI GATC 1 cut(s) 66
MboII GAAGA 7 cut(s) 83, 179, 383, 449, 512, 576, 638
MfeI CAATTG 1 cut(s) 107
MhlI GDGCHC 1 cut(s) 159
MlsI TGGCCA 1 cut(s) 150
MluCI AATT 3 cut(s) 74, 90, 107
MluNI TGGCCA 1 cut(s) 150
Mox20I TGGCCA 1 cut(s) 150
Mph1103I ATGCAT 1 cut(s) 135
MscI TGGCCA 1 cut(s) 150
MseI TTAA 1 cut(s) 89
Msp20I TGGCCA 1 cut(s) 150
MspI CCGG 1 cut(s) 514
MunI CAATTG 1 cut(s) 107
Mva1269I GAATGC 1 cut(s) 140
NdeII GATC 1 cut(s) 66
NlaIII CATG 3 cut(s) 64, 137, 194
NlaIV GGNNCC 1 cut(s) 518
NsiI ATGCAT 1 cut(s) 135
NspI RCATGY 2 cut(s) 64, 137
PaeI GCATGC 1 cut(s) 64
PcsI WCGNNNNNNNCGW 1 cut(s) 150
PctI GAATGC 1 cut(s) 140
Ple19I CGATCG 1 cut(s) 69
PmaCI CACGTG 1 cut(s) 154
PmlI CACGTG 1 cut(s) 154
Ppu21I YACGTR 1 cut(s) 154
PspCI CACGTG 1 cut(s) 154
PspFI CCCAGC 1 cut(s) 385
PspN4I GGNNCC 1 cut(s) 518
PvuI CGATCG 1 cut(s) 69
RsaI GTAC 3 cut(s) 325, 582, 643
RsaNI GTAC 3 cut(s) 324, 581, 642
SaqAI TTAA 1 cut(s) 89
Sau3AI GATC 1 cut(s) 66
SduI GDGCHC 1 cut(s) 159
SfaNI GCATC 4 cut(s) 134, 211, 232, 282
SphI GCATGC 1 cut(s) 64
Sse9I AATT 3 cut(s) 74, 90, 107
SsiI CCGC 2 cut(s) 5, 451
SspMI CTAG 2 cut(s) 122, 270
StyI CCWWGG 1 cut(s) 55
TaiI ACGT 1 cut(s) 156
TaqI TCGA 8 cut(s) 69, 144, 353, 419, 482, 546, 608, 672
TasI AATT 3 cut(s) 74, 90, 107
Tru1I TTAA 1 cut(s) 89
Tru9I TTAA 1 cut(s) 89
TspDTI ATGAA 2 cut(s) 191, 294
TspGWI ACGGA 4 cut(s) 355, 548, 610, 629
VneI GTGCAC 1 cut(s) 155
XceI RCATGY 2 cut(s) 64, 137
XspI CTAG 2 cut(s) 122, 270
Zsp2I ATGCAT 1 cut(s) 135
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.