FvH4_7g04120

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0000385
Physical Location & Seq
Reverse (-)
4715024 .. 4716207
1184 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g04120.t1

Sequence Viewer

Length: 477 bp
ATGGGAAAGTTGATGTACGACAACAATCCAAGCCAAACGTGGGAAGTTGGTATGGACTCCAAAGGGCTCGGCATGGTGCAATGTTGGGTGCATGATGAGGGTGCTCGGCAGGGTGTGTTGTTAGGAGCGGAAGGATGCATGAGAGAGTGCACTGCTGGGTGCATGACAAGTGTGCTCGGTAGGGTGCTACAAGGGTGCGAGGAAGTTAGAGGGAAATTATCTCCACAAAGCATGCAAGTTAGTGGGCGGTTACCTAGCACTAAAAGTGAGAAAGTTGGTAAGGAAGTTATGCATATCTTGGTGGATGCGTTGTTGGGTGCGGAAGGATGCATGAGAGGGTGCACTGCTGGGTGCATGACAAGTGTGCTCGGCAAGGTGCTACAAAGGTGCGAGAAAGGTGCGAGGAAGGTGCGCTGCAGGGTGCTCGGCAAGGTGTTCGGTAAGATGCAACGAAAGGTGCGTGCGGGTGCACTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

159

Amino Acids

17.0

Weight (kDa)

9.32

Isoelectric Point (pI)

42.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000385)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g23713 FvH4_1g25744 FvH4_2g00261 FvH4_2g00262 FvH4_2g15681 FvH4_2g17851 FvH4_2g35550 FvH4_3g05280 FvH4_3g10531 FvH4_3g25910 FvH4_3g28953 FvH4_3g33371 FvH4_3g33536 FvH4_3g36090 FvH4_4g03471 FvH4_4g03480 FvH4_4g06701 FvH4_4g19351 FvH4_4g34281 FvH4_5g00040 FvH4_5g03811 FvH4_5g03812 FvH4_5g11822 FvH4_5g30921 FvH4_5g31701 FvH4_6g12161 FvH4_6g15222 FvH4_6g15223 FvH4_6g17701 FvH4_6g17710 FvH4_6g19301 FvH4_6g33011 FvH4_6g34501 FvH4_6g50161 FvH4_7g04111 FvH4_7g04120 FvH4_7g04121 FvH4_7g04122 FvH4_7g04123 FvH4_7g28231 FvH4_c7g00010
malus_domestica MD12G1084200.v1.1
prunus_persica Prupe.1G206200_v2.0.a1 Prupe.8G085600_v2.0.a1
pyrus_communis pycom01g11080 pycom02g20500 pycom09g18370 pycom12555g00210 pycom13g23120 pycom14g10590 pycom16g17620 pycom16g22750
rosa_chinensis RchiOBHm_Chr2g0137481 RchiOBHm_Chr6g0251961 RchiOBHm_Chr7g0185821
rosa_laevigata RLG00000005585 RLG00000010281 RLG00000010912 RLG00000030342 RLG00000034281
rosa_multiflora Rmu_sc0000096.1_g000010 Rmu_sc0002481.1_g000045 Rmu_sc0003598.1_g000009 Rmu_sc0003863.1_g000019 Rmu_sc0003973.1_g000002 Rmu_sc0004823.1_g000050 Rmu_sc0005621.1_g000007 Rmu_sc0006537.1_g000030 Rmu_sc0006608.1_g000014 Rmu_sc0008506.1_g000007 Rmu_sc0014428.1_g000001 Rmu_sc0035437.1_g000001 Rmu_ssc0000396.1_g000022
rosa_roxburghii Rroxscaffold_175G00432300 Rroxscaffold_17G00435390 Rroxscaffold_27G00446590 Rroxscaffold_29G00441820 Rroxscaffold_31G00438110 Rroxscaffold_32G00442750 Rroxscaffold_33G00439810 Rroxscaffold_37G00445160 Rroxscaffold_4G00306500 Rroxscaffold_4G00327700 Rroxscaffold_4G00332630 Rroxscaffold_52G00439360 Rroxscaffold_63G00444420 Rroxscaffold_76G00448580 Rroxscaffold_7G00156270
rosa_rugosa Rorug03G0295200
rosa_samantha Rh1BG433700 Rh1CG115400 Rh2AG676300 Rh2CG341800 Rh2DG381400 Rh3BG370100 Rh3BG370200 Rh4AG441600 Rh4BG076500 Rh4BG107400 Rh5BG005600 Rh6BG010100 Rh7BG000200
rosa_wichuraiana Rw0G003820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 128
AciI CCGC 4 cut(s) 128, 247, 320, 464
AfaI GTAC 1 cut(s) 17
AfiI CCNNNNNNNGG 1 cut(s) 40
Alw21I GWGCWC 7 cut(s) 106, 152, 177, 344, 369, 426, 472
Alw44I GTGCAC 3 cut(s) 148, 340, 468
ApaLI GTGCAC 3 cut(s) 148, 340, 468
ApeKI GCWGC 1 cut(s) 414
AspLEI GCGC 1 cut(s) 414
BaeGI GKGCMC 3 cut(s) 152, 344, 472
BanII GRGCYC 1 cut(s) 69
Bbv12I GWGCWC 7 cut(s) 106, 152, 177, 344, 369, 426, 472
BbvI GCAGC 1 cut(s) 401
BcgI CGANNNNNNTGC 8 cut(s) 380, 391, 406, 414, 418, 425, 440, 452
BfaI CTAG 2 cut(s) 255, 475
BfmI CTRYAG 1 cut(s) 415
BisI GCNGC 1 cut(s) 415
BlsI GCNGC 1 cut(s) 416
BmsI GCATC 4 cut(s) 125, 295, 317, 435
Bsc4I CCNNNNNNNGG 1 cut(s) 40
Bse3DI GCAATG 1 cut(s) 86
BseGI GGATG 3 cut(s) 140, 310, 332
BseLI CCNNNNNNNGG 1 cut(s) 40
BseMI GCAATG 1 cut(s) 86
BseSI GKGCMC 3 cut(s) 152, 344, 472
BseXI GCAGC 1 cut(s) 401
BseYI CCCAGC 2 cut(s) 155, 347
BsiHKAI GWGCWC 7 cut(s) 106, 152, 177, 344, 369, 426, 472
BslI CCNNNNNNNGG 1 cut(s) 40
Bsp1286I GDGCHC 8 cut(s) 69, 106, 152, 177, 344, 369, 426, 472
BspACI CCGC 4 cut(s) 128, 247, 320, 464
BspMAI CTGCAG 1 cut(s) 419
BsrBI CCGCTC 1 cut(s) 128
BsrDI GCAATG 1 cut(s) 86
BstC8I GCNNGC 2 cut(s) 233, 462
BstEII GGTNACC 1 cut(s) 249
BstF5I GGATG 3 cut(s) 140, 310, 332
BstHHI GCGC 1 cut(s) 414
BstNSI RCATGY 1 cut(s) 235
BstPI GGTNACC 1 cut(s) 249
BstSFI CTRYAG 1 cut(s) 415
BstSLI GKGCMC 3 cut(s) 152, 344, 472
BstV1I GCAGC 1 cut(s) 401
BtsCI GGATG 3 cut(s) 140, 310, 332
BtsI GCAGTG 2 cut(s) 150, 342
BtsIMutI CAGTG 2 cut(s) 150, 342
Cac8I GCNNGC 2 cut(s) 233, 462
CfoI GCGC 1 cut(s) 414
Csp6I GTAC 1 cut(s) 16
CviAII CATG 7 cut(s) 73, 92, 139, 163, 232, 331, 355
CviJI RGCY 2 cut(s) 33, 67
CviKI_1 RGCY 2 cut(s) 33, 67
CviQI GTAC 1 cut(s) 16
Eco24I GRGCYC 1 cut(s) 69
Eco91I GGTNACC 1 cut(s) 249
EcoO65I GGTNACC 1 cut(s) 249
EcoT22I ATGCAT 3 cut(s) 140, 294, 332
EcoT38I GRGCYC 1 cut(s) 69
FaeI CATG 7 cut(s) 76, 95, 142, 166, 235, 334, 358
FatI CATG 7 cut(s) 72, 91, 138, 162, 231, 330, 354
FauI CCCGC 1 cut(s) 457
Fnu4HI GCNGC 1 cut(s) 415
FokI GGATG 3 cut(s) 147, 317, 339
FriOI GRGCYC 1 cut(s) 69
Fsp4HI GCNGC 1 cut(s) 415
FspBI CTAG 2 cut(s) 255, 475
GlaI GCGC 1 cut(s) 413
GluI GCNGC 1 cut(s) 415
GsaI CCCAGC 2 cut(s) 159, 351
HhaI GCGC 1 cut(s) 414
Hin1II CATG 7 cut(s) 76, 95, 142, 166, 235, 334, 358
Hin6I GCGC 1 cut(s) 412
HinP1I GCGC 1 cut(s) 412
HinfI GANTC 1 cut(s) 56
Hpy166II GTNNAC 3 cut(s) 150, 342, 470
Hpy8I GTNNAC 3 cut(s) 150, 342, 470
HpyAV CCTTC 3 cut(s) 125, 317, 400
HpyCH4IV ACGT 1 cut(s) 38
HpySE526I ACGT 1 cut(s) 38
Hsp92II CATG 7 cut(s) 76, 95, 142, 166, 235, 334, 358
HspAI GCGC 1 cut(s) 412
LmnI GCTCC 1 cut(s) 125
LpnPI CCDG 4 cut(s) 95, 141, 333, 403
Lsp1109I GCAGC 1 cut(s) 401
LweI GCATC 4 cut(s) 125, 295, 317, 435
MaeI CTAG 2 cut(s) 255, 475
MaeII ACGT 1 cut(s) 38
MaeIII GTNAC 1 cut(s) 249
MbiI CCGCTC 1 cut(s) 128
MhlI GDGCHC 8 cut(s) 69, 106, 152, 177, 344, 369, 426, 472
MluCI AATT 1 cut(s) 215
MlyI GAGTC 1 cut(s) 50
MnlI CCTC 5 cut(s) 91, 193, 203, 329, 396
Mph1103I ATGCAT 3 cut(s) 140, 294, 332
NlaIII CATG 7 cut(s) 76, 95, 142, 166, 235, 334, 358
NmeAIII GCCGAG 4 cut(s) 48, 85, 348, 405
NsiI ATGCAT 3 cut(s) 140, 294, 332
NspI RCATGY 1 cut(s) 235
PaeI GCATGC 1 cut(s) 235
PcsI WCGNNNNNNNCGW 1 cut(s) 457
PkrI GCNGC 1 cut(s) 416
PleI GAGTC 1 cut(s) 50
PpsI GAGTC 1 cut(s) 50
PspEI GGTNACC 1 cut(s) 249
PspFI CCCAGC 2 cut(s) 155, 347
PstI CTGCAG 1 cut(s) 419
RsaI GTAC 1 cut(s) 17
RsaNI GTAC 1 cut(s) 16
SatI GCNGC 1 cut(s) 415
SchI GAGTC 1 cut(s) 50
SduI GDGCHC 8 cut(s) 69, 106, 152, 177, 344, 369, 426, 472
SetI ASST 8 cut(s) 41, 256, 378, 389, 400, 411, 435, 459
SfaNI GCATC 4 cut(s) 125, 295, 317, 435
SfcI CTRYAG 1 cut(s) 415
SphI GCATGC 1 cut(s) 235
Sse9I AATT 1 cut(s) 215
SsiI CCGC 4 cut(s) 128, 247, 320, 464
SspMI CTAG 2 cut(s) 255, 475
TaiI ACGT 1 cut(s) 41
TasI AATT 1 cut(s) 215
TscAI CASTG 2 cut(s) 157, 349
TseI GCWGC 1 cut(s) 414
TspRI CASTG 2 cut(s) 157, 349
VneI GTGCAC 3 cut(s) 148, 340, 468
XceI RCATGY 1 cut(s) 235
XcmI CCANNNNNNNNNTGG 1 cut(s) 36
XspI CTAG 2 cut(s) 255, 475
Zsp2I ATGCAT 3 cut(s) 140, 294, 332
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.