Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0000385

Physical Location & Seq

Genomic Coordinates Forward (+)

5297714 .. 5298106

Gene Structure 393 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000010912

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGTCGGAGAAGGATCGGTTGTTCTACTTCCTTGAAGGCTTAAAGCCATGGGCGAGGACAGAACTTCAGCGGCAGAGAGTCCAAGATTTGGCCTCCGCACAAGCTGCTGCTGAAAGGTTGACGGACTACACATTCGAAGAGAAGTCTACTAAGAAGACTCAGCCATTTTCAAATGCGAATGTCAACAGAAATGTAAGGTCGGGACCGAGTAGAAGTGGGGGAGCGGAGTCTAAATTTTCTAACTCAGGAGGAGGGGACAGGAGAATAGTGAATGCGAGGGACACGACAGCATCCAAGCCTGCTGCCTCGACAGGGGTCTTCACCCGTCGACTTTTAATCCCTCAGGTTATGCTCCAAAGCCACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005975 GO:0005976 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0010393 GO:0016787 GO:0016788 GO:0017144 GO:0030599 GO:0042742 GO:0043170 GO:0043207 GO:0044237 GO:0044238 GO:0045488 GO:0050829 GO:0050896 GO:0051704 GO:0051707 GO:0052689 GO:0071704 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 map00040 map01100

Pfam Domains

Protein Families

Pectinesterase

Protein Analysis

122

Amino Acids

13.48

Weight (kDa)

10.45

Isoelectric Point (pI)

57.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000385)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g23713 FvH4_1g25744 FvH4_2g00261 FvH4_2g00262 FvH4_2g15681 FvH4_2g17851 FvH4_2g35550 FvH4_3g05280 FvH4_3g10531 FvH4_3g25910 FvH4_3g28953 FvH4_3g33371 FvH4_3g33536 FvH4_3g36090 FvH4_4g03471 FvH4_4g03480 FvH4_4g06701 FvH4_4g19351 FvH4_4g34281 FvH4_5g00040 FvH4_5g03811 FvH4_5g03812 FvH4_5g11822 FvH4_5g30921 FvH4_5g31701 FvH4_6g12161 FvH4_6g15222 FvH4_6g15223 FvH4_6g17701 FvH4_6g17710 FvH4_6g19301 FvH4_6g33011 FvH4_6g34501 FvH4_6g50161 FvH4_7g04111 FvH4_7g04120 FvH4_7g04121 FvH4_7g04122 FvH4_7g04123 FvH4_7g28231 FvH4_c7g00010
malus_domestica	MD12G1084200.v1.1
prunus_persica	Prupe.1G206200_v2.0.a1 Prupe.8G085600_v2.0.a1
pyrus_communis	pycom01g11080 pycom02g20500 pycom09g18370 pycom12555g00210 pycom13g23120 pycom14g10590 pycom16g17620 pycom16g22750
rosa_chinensis	RchiOBHm_Chr2g0137481 RchiOBHm_Chr6g0251961 RchiOBHm_Chr7g0185821
rosa_laevigata	RLG00000005585 RLG00000010281 RLG00000010912 RLG00000030342 RLG00000034281
rosa_multiflora	Rmu_sc0000096.1_g000010 Rmu_sc0002481.1_g000045 Rmu_sc0003598.1_g000009 Rmu_sc0003863.1_g000019 Rmu_sc0003973.1_g000002 Rmu_sc0004823.1_g000050 Rmu_sc0005621.1_g000007 Rmu_sc0006537.1_g000030 Rmu_sc0006608.1_g000014 Rmu_sc0008506.1_g000007 Rmu_sc0014428.1_g000001 Rmu_sc0035437.1_g000001 Rmu_ssc0000396.1_g000022
rosa_roxburghii	Rroxscaffold_175G00432300 Rroxscaffold_17G00435390 Rroxscaffold_27G00446590 Rroxscaffold_29G00441820 Rroxscaffold_31G00438110 Rroxscaffold_32G00442750 Rroxscaffold_33G00439810 Rroxscaffold_37G00445160 Rroxscaffold_4G00306500 Rroxscaffold_4G00327700 Rroxscaffold_4G00332630 Rroxscaffold_52G00439360 Rroxscaffold_63G00444420 Rroxscaffold_76G00448580 Rroxscaffold_7G00156270
rosa_rugosa	Rorug03G0295200
rosa_samantha	Rh1BG433700 Rh1CG115400 Rh2AG676300 Rh2CG341800 Rh2DG381400 Rh3BG370100 Rh3BG370200 Rh4AG441600 Rh4BG076500 Rh4BG107400 Rh5BG005600 Rh6BG010100 Rh7BG000200
rosa_wichuraiana	Rw0G003820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	88
AccBSI	CCGCTC	1 cut(s)	224
AccI	GTMKAC	2 cut(s)	146, 328
AciI	CCGC	3 cut(s)	70, 96, 224
AclWI	GGATC	1 cut(s)	21
AcsI	RAATTY	1 cut(s)	233
AcuI	CTGAAG	1 cut(s)	50
AfiI	CCNNNNNNNGG	2 cut(s)	88, 312
AgsI	TTSAA	2 cut(s)	35, 171
AloI	GAACNNNNNNTCC	1 cut(s)	37
AluBI	AGCT	1 cut(s)	104
AluI	AGCT	1 cut(s)	104
AlwI	GGATC	1 cut(s)	21
AoxI	GGCC	1 cut(s)	90
ApeKI	GCWGC	3 cut(s)	104, 107, 302
ApoI	RAATTY	1 cut(s)	233
ArsI	GACNNNNNNTTYG	2 cut(s)	116, 148
AspS9I	GGNCC	1 cut(s)	203
AsuHPI	GGTGA	1 cut(s)	313
AsuII	TTCGAA	1 cut(s)	135
AvaII	GGWCC	1 cut(s)	203
AxyI	CCTNAGG	1 cut(s)	342
BbsI	GAAGAC	2 cut(s)	161, 310
BbvI	GCAGC	3 cut(s)	91, 94, 289
BfaI	CTAG	1 cut(s)	364
BisI	GCNGC	4 cut(s)	71, 105, 108, 303
BlsI	GCNGC	4 cut(s)	72, 106, 109, 304
Bme18I	GGWCC	1 cut(s)	203
BmgT120I	GGNCC	1 cut(s)	203
BmiI	GGNNCC	1 cut(s)	204
BmsI	GCATC	1 cut(s)	299
BoxI	GACNNNNGTC	1 cut(s)	314
BpiI	GAAGAC	2 cut(s)	161, 310
Bpu14I	TTCGAA	1 cut(s)	135
BsaJI	CCNNGG	1 cut(s)	47
Bsc4I	CCNNNNNNNGG	2 cut(s)	88, 312
Bse21I	CCTNAGG	1 cut(s)	342
BseDI	CCNNGG	1 cut(s)	47
BseGI	GGATG	1 cut(s)	290
BseLI	CCNNNNNNNGG	2 cut(s)	88, 312
BseMII	CTCAG	3 cut(s)	173, 258, 356
BseRI	GAGGAG	1 cut(s)	264
BseXI	GCAGC	3 cut(s)	91, 94, 289
BshFI	GGCC	1 cut(s)	92
BslFI	GGGAC	3 cut(s)	216, 269, 293
BslI	CCNNNNNNNGG	2 cut(s)	88, 312
BsmFI	GGGAC	3 cut(s)	216, 269, 293
BsmI	GAATGC	1 cut(s)	277
BsnI	GGCC	1 cut(s)	92
Bsp119I	TTCGAA	1 cut(s)	135
Bsp143I	GATC	1 cut(s)	13
Bsp19I	CCATGG	1 cut(s)	47
BspACI	CCGC	3 cut(s)	70, 96, 224
BspANI	GGCC	1 cut(s)	92
BspCNI	CTCAG	3 cut(s)	172, 257, 355
BspLI	GGNNCC	1 cut(s)	204
BspPI	GGATC	1 cut(s)	21
BspT104I	TTCGAA	1 cut(s)	135
BsrBI	CCGCTC	1 cut(s)	224
BssECI	CCNNGG	1 cut(s)	47
BssMI	GATC	1 cut(s)	13
BssT1I	CCWWGG	1 cut(s)	47
Bst6I	CTCTTC	1 cut(s)	132
BstAPI	GCANNNNNTGC	1 cut(s)	104
BstBI	TTCGAA	1 cut(s)	135
BstC8I	GCNNGC	1 cut(s)	300
BstDEI	CTNAG	4 cut(s)	150, 159, 244, 342
BstDSI	CCRYGG	1 cut(s)	47
BstF5I	GGATG	1 cut(s)	290
BstKTI	GATC	1 cut(s)	16
BstMBI	GATC	1 cut(s)	13
BstMWI	GCNNNNNNNGC	1 cut(s)	104
BstPAI	GACNNNNGTC	1 cut(s)	314
BstV1I	GCAGC	3 cut(s)	91, 94, 289
BstV2I	GAAGAC	2 cut(s)	161, 310
Bsu36I	CCTNAGG	1 cut(s)	342
BsuRI	GGCC	1 cut(s)	92
BtgI	CCRYGG	1 cut(s)	47
BtsCI	GGATG	1 cut(s)	290
Cac8I	GCNNGC	1 cut(s)	300
Cfr13I	GGNCC	1 cut(s)	203
CviAII	CATG	1 cut(s)	48
CviJI	RGCY	7 cut(s)	39, 46, 92, 104, 163, 298, 360
CviKI_1	RGCY	7 cut(s)	39, 46, 92, 104, 163, 298, 360
DdeI	CTNAG	4 cut(s)	150, 159, 244, 342
DpnI	GATC	1 cut(s)	15
DpnII	GATC	1 cut(s)	13
Eam1104I	CTCTTC	1 cut(s)	132
EarI	CTCTTC	1 cut(s)	132
Eco130I	CCWWGG	1 cut(s)	47
Eco47I	GGWCC	1 cut(s)	203
Eco57I	CTGAAG	1 cut(s)	50
Eco81I	CCTNAGG	1 cut(s)	342
EcoT14I	CCWWGG	1 cut(s)	47
ErhI	CCWWGG	1 cut(s)	47
FaeI	CATG	1 cut(s)	51
FaiI	YATR	2 cut(s)	49, 350
FaqI	GGGAC	3 cut(s)	216, 269, 293
FatI	CATG	1 cut(s)	47
FblI	GTMKAC	2 cut(s)	146, 328
Fnu4HI	GCNGC	4 cut(s)	71, 105, 108, 303
FokI	GGATG	1 cut(s)	277
Fsp4HI	GCNGC	4 cut(s)	71, 105, 108, 303
FspBI	CTAG	1 cut(s)	364
GluI	GCNGC	4 cut(s)	71, 105, 108, 303
HaeIII	GGCC	1 cut(s)	92
Hin1II	CATG	1 cut(s)	51
HincII	GTYRAC	3 cut(s)	120, 184, 329
HindII	GTYRAC	3 cut(s)	120, 184, 329
HinfI	GANTC	3 cut(s)	78, 157, 227
HphI	GGTGA	1 cut(s)	313
Hpy166II	GTNNAC	4 cut(s)	120, 147, 184, 329
Hpy188I	TCNGA	1 cut(s)	7
Hpy188III	TCNNGA	2 cut(s)	201, 246
Hpy8I	GTNNAC	4 cut(s)	120, 147, 184, 329
Hpy99I	CGWCG	1 cut(s)	330
HpyAV	CCTTC	2 cut(s)	4, 29
HpyF10VI	GCNNNNNNNGC	1 cut(s)	104
HpyF3I	CTNAG	4 cut(s)	150, 159, 244, 342
Hsp92II	CATG	1 cut(s)	51
Kzo9I	GATC	1 cut(s)	13
LmnI	GCTCC	2 cut(s)	221, 357
LpnPI	CCDG	5 cut(s)	231, 244, 297, 312, 329
Lsp1109I	GCAGC	3 cut(s)	91, 94, 289
LweI	GCATC	1 cut(s)	299
MaeI	CTAG	1 cut(s)	364
MalI	GATC	1 cut(s)	15
MbiI	CCGCTC	1 cut(s)	224
MboI	GATC	1 cut(s)	13
MboII	GAAGA	3 cut(s)	149, 166, 310
MluCI	AATT	1 cut(s)	233
MlyI	GAGTC	3 cut(s)	87, 151, 236
MnlI	CCTC	7 cut(s)	48, 103, 242, 245, 270, 316, 351
MseI	TTAA	2 cut(s)	41, 335
MspA1I	CMGCKG	1 cut(s)	70
Mva1269I	GAATGC	1 cut(s)	277
MwoI	GCNNNNNNNGC	1 cut(s)	104
NcoI	CCATGG	1 cut(s)	47
NdeII	GATC	1 cut(s)	13
NlaIII	CATG	1 cut(s)	51
NlaIV	GGNNCC	1 cut(s)	204
NspV	TTCGAA	1 cut(s)	135
PctI	GAATGC	1 cut(s)	277
PflMI	CCANNNNNTGG	1 cut(s)	88
PkrI	GCNGC	4 cut(s)	72, 106, 109, 304
PleI	GAGTC	3 cut(s)	86, 151, 235
PpsI	GAGTC	3 cut(s)	86, 151, 235
PshAI	GACNNNNGTC	1 cut(s)	314
PspN4I	GGNNCC	1 cut(s)	204
PspPI	GGNCC	1 cut(s)	203
SalI	GTCGAC	1 cut(s)	327
SaqAI	TTAA	2 cut(s)	41, 335
SatI	GCNGC	4 cut(s)	71, 105, 108, 303
Sau3AI	GATC	1 cut(s)	13
Sau96I	GGNCC	1 cut(s)	203
SchI	GAGTC	3 cut(s)	87, 151, 236
SetI	ASST	4 cut(s)	106, 119, 200, 348
SfaNI	GCATC	1 cut(s)	299
SfuI	TTCGAA	1 cut(s)	135
SinI	GGWCC	1 cut(s)	203
Sse9I	AATT	1 cut(s)	233
SsiI	CCGC	3 cut(s)	70, 96, 224
SspMI	CTAG	1 cut(s)	364
StyI	CCWWGG	1 cut(s)	47
TaqI	TCGA	3 cut(s)	135, 308, 328
TaqII	GACCGA	1 cut(s)	220
TasI	AATT	1 cut(s)	233
TauI	GCSGC	1 cut(s)	73
Tru1I	TTAA	2 cut(s)	41, 335
Tru9I	TTAA	2 cut(s)	41, 335
TseI	GCWGC	3 cut(s)	104, 107, 302
TspGWI	ACGGA	1 cut(s)	137
Van91I	CCANNNNNTGG	1 cut(s)	88
VpaK11BI	GGWCC	1 cut(s)	203
XapI	RAATTY	1 cut(s)	233
XmiI	GTMKAC	2 cut(s)	146, 328
XspI	CTAG	1 cut(s)	364

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.