FvH4_3g36090

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000385
Physical Location & Seq
Reverse (-)
30943482 .. 30946761
3280 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g36090.t1

Sequence Viewer

Length: 2127 bp
ATGGAGGACGACATCATTCAAAAAGTTAGAGTCTCGGAGCCTAAGATGTTCAATGGAGAAAGGAATGCCAAATTCTTGGAGAATTTCATATGGGACATCAAACAATACTTCAAAACTGCTTGCATAGCGGAGGGGGAGAAAGTCTCAATGGCCTCAATGTACCTAGAAGGAGATGCAAAGTTTTGGTGGAGAACGAGAGTGCAAGACGCTGAGGAGAATGAAGATGAGCACCTACTTGAAAATTGGGATGCTATAAAGAAAGAATTAAGGAGTCAGTTTATGCCTTGCAACTCGGCATGGATGGCTCGTGAAGCATTAAGGAATCTAAGAATGGCCTTCATAAGAGAGTACGTCAAGGAGTTTTGTTCGTTAATGCTTGACATCCACAACATGGCAGAAGAAGACAAGCTATTTAACTTCATGGCGGCATTACAACCTTGGGCGAAACAAGAATTACGAAGGCAAAACGTTGGAGATTTGCAATCTGCACTAGCCTTATCTGAAAGGTTGGTGGATTTTCGGACAAGCCCTGCATATTCAGACAAGAGGAGAGAGGCAAACAAGAAATTCGGAGTTGACCCATTCCAAGGGAGTGGCAAAGGGCTAGAAAGCGGGAGAGGCGGTTACAAAACTGTCCACTCACCCACTACTTCCACAATGAGCAAAAATATGGCCACTACCCATGATCTTCCACACAACAAGGGGTTTACTTCATGCTTTATATGCAATGGACCTCATTTTGAAAAAAATTGCAGCCAAAAGCAAGCATTGAGTGCTCTAGTCTCAATTGCAAACAATATCAAAGAGAAAGAAACACAAGAAGATTCAGAGGCAATCATGAGTTCGATGGTGCTACTCAACACGTTGTCATTGGAGGGTGAGATGAAGCATGCGGATCTTGAGGTCTATGTTGATGTATTTGCCTATCACTATGGGCACTACACCATCATGTCCTCACTTGTCATTGAAGGGGACATTCTTTTCATTGACGAGATGATGCAATTTGAAGATCCACTACTACCAACCTACACACTTGAGGAGGAGGAAGCTATTGCGGCAGCCAAGACCTTGAAGATGTGGAAAGAGCATTTGAAGGGAAGGAAATTTGAGTTATACACTAAGGTTTGGAGAGACATGCTCACCTTGAGCGTGTTTCCTCCTTTCCGAAGGTGGAGTGCACTTTATGAGGAGACCAAGCAAGTTATGAAGAACTTTGGGTATGAATGGGTGATGAAGAGTGGGATGCATGAGCAAATGAAGAAGGAAGCCACAAATCTACCGGATGTCATCGTCATAAGTGACGACGAAGAAGAAGAGTGTCTCGAGAAGGAGACGAGCTTGGAAACCAACACTTGGACCGAGCATAAGAAGAATGAGCAAGCAGCAAATTGGCTTGCATGGGGAGAGCAAGAAAAGATGAACGAGGAGTCGTTATTCGACATCCTTGGTGAAAAAAATTACGGCAATCAGCCGAGGCTCAAGGAGAGGGAGAAGATGGCATGGGAGGAGTTCACAAAGGCAATGAAAGTTTATGATGCCACCAAAGGCAGCAAAGATGCAGCCAAGTGGGAGAAAGCAGCGGACAACAAGCAAGAAGATGAAGCGGCAAAGGCGCGCGGCATAGGTTATCTTTGCACCATGCTGGGACTCATGAAGGCTCAAGCAAGGATAAGCTCTAGTGGGATGGGAAAGTTGGTATGCGGCAACGATCTAAGCCAAAGGAAGGAAGGCGGCATGGACCCTAAAGGCTTGGCAGGGTGCAGTGTCGGGTGCATGATAAGTGGTGCTACGAAGGTGCGAGAAGGGTGCAAGAAAGGTGGGCTGCAAGGTGCTCGGCAGGATAGTGTTCCTTTATCTCACCTGAACTCGGTAGAACGGTTGAATCTAAAAACATGGCAGTGGGAAGCACTGAAGAACATGCCGAACCGGCGAGCATTTGCATATGGCATTGCTCACAAAGATAGGTTCTTTGTGGTTGGTGGTGGTAGCAATGCAGCCCTCAAGCACTCAGGTGAGATGTACAACCCAAGCAACAACTCTTGGCGGTCTCTGGAATCATTTGTTCCCCAAGACGCAGAAGGGTTCTCTGCTACATCACTCAATCAGCTTCTACTGATGCTGACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Asp_protease_2 Chromo RVT_1 Retrotrans_gag gag-asp_proteas rve

Protein Analysis

709

Amino Acids

80.83

Weight (kDa)

5.78

Isoelectric Point (pI)

45.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Retrotrans_gag PF03732 50 - 145 2.9e-13 Retrotransposon gag protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000385)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g23713 FvH4_1g25744 FvH4_2g00261 FvH4_2g00262 FvH4_2g15681 FvH4_2g17851 FvH4_2g35550 FvH4_3g05280 FvH4_3g10531 FvH4_3g25910 FvH4_3g28953 FvH4_3g33371 FvH4_3g33536 FvH4_3g36090 FvH4_4g03471 FvH4_4g03480 FvH4_4g06701 FvH4_4g19351 FvH4_4g34281 FvH4_5g00040 FvH4_5g03811 FvH4_5g03812 FvH4_5g11822 FvH4_5g30921 FvH4_5g31701 FvH4_6g12161 FvH4_6g15222 FvH4_6g15223 FvH4_6g17701 FvH4_6g17710 FvH4_6g19301 FvH4_6g33011 FvH4_6g34501 FvH4_6g50161 FvH4_7g04111 FvH4_7g04120 FvH4_7g04121 FvH4_7g04122 FvH4_7g04123 FvH4_7g28231 FvH4_c7g00010
malus_domestica MD12G1084200.v1.1
prunus_persica Prupe.1G206200_v2.0.a1 Prupe.8G085600_v2.0.a1
pyrus_communis pycom01g11080 pycom02g20500 pycom09g18370 pycom12555g00210 pycom13g23120 pycom14g10590 pycom16g17620 pycom16g22750
rosa_chinensis RchiOBHm_Chr2g0137481 RchiOBHm_Chr6g0251961 RchiOBHm_Chr7g0185821
rosa_laevigata RLG00000005585 RLG00000010281 RLG00000010912 RLG00000030342 RLG00000034281
rosa_multiflora Rmu_sc0000096.1_g000010 Rmu_sc0002481.1_g000045 Rmu_sc0003598.1_g000009 Rmu_sc0003863.1_g000019 Rmu_sc0003973.1_g000002 Rmu_sc0004823.1_g000050 Rmu_sc0005621.1_g000007 Rmu_sc0006537.1_g000030 Rmu_sc0006608.1_g000014 Rmu_sc0008506.1_g000007 Rmu_sc0014428.1_g000001 Rmu_sc0035437.1_g000001 Rmu_ssc0000396.1_g000022
rosa_roxburghii Rroxscaffold_175G00432300 Rroxscaffold_17G00435390 Rroxscaffold_27G00446590 Rroxscaffold_29G00441820 Rroxscaffold_31G00438110 Rroxscaffold_32G00442750 Rroxscaffold_33G00439810 Rroxscaffold_37G00445160 Rroxscaffold_4G00306500 Rroxscaffold_4G00327700 Rroxscaffold_4G00332630 Rroxscaffold_52G00439360 Rroxscaffold_63G00444420 Rroxscaffold_76G00448580 Rroxscaffold_7G00156270
rosa_rugosa Rorug03G0295200
rosa_samantha Rh1BG433700 Rh1CG115400 Rh2AG676300 Rh2CG341800 Rh2DG381400 Rh3BG370100 Rh3BG370200 Rh4AG441600 Rh4BG076500 Rh4BG107400 Rh5BG005600 Rh6BG010100 Rh7BG000200
rosa_wichuraiana Rw0G003820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 391, 1353
AccII CGCG 2 cut(s) 1615, 1617
AclI AACGTT 1 cut(s) 468
AclWI GGATC 2 cut(s) 903, 1004
AcoI YGGCCR 1 cut(s) 672
AcsI RAATTY 4 cut(s) 71, 82, 566, 1103
AcuI CTGAAG 1 cut(s) 1931
AfaI GTAC 3 cut(s) 161, 350, 2021
AfiI CCNNNNNNNGG 5 cut(s) 391, 587, 1353, 1723, 1867
AflIII ACRYGT 1 cut(s) 861
AleI CACNNNNGTG 1 cut(s) 2010
AluBI AGCT 5 cut(s) 409, 1049, 1338, 1674, 2107
AluI AGCT 5 cut(s) 409, 1049, 1338, 1674, 2107
Alw21I GWGCWC 4 cut(s) 231, 778, 1180, 1834
Alw26I GTCTC 8 cut(s) 37, 148, 787, 1125, 1184, 1325, 1325, 2052
Alw44I GTGCAC 1 cut(s) 1176
AlwI GGATC 2 cut(s) 903, 1004
Ama87I CYCGRG 1 cut(s) 1322
AoxI GGCC 3 cut(s) 150, 333, 672
ApaLI GTGCAC 1 cut(s) 1176
ApeKI GCWGC 8 cut(s) 753, 1058, 1382, 1548, 1559, 1577, 1822, 1994
ApoI RAATTY 4 cut(s) 71, 82, 566, 1103
AspLEI GCGC 2 cut(s) 1615, 1617
AspS9I GGNCC 3 cut(s) 731, 1356, 1738
AsuHPI GGTGA 7 cut(s) 633, 890, 1132, 1240, 1460, 1850, 2024
AvaI CYCGRG 1 cut(s) 1322
AvaII GGWCC 3 cut(s) 731, 1356, 1738
BaeGI GKGCMC 2 cut(s) 939, 1180
BalI TGGCCA 1 cut(s) 674
BarI GAAGNNNNNNTAC 2 cut(s) 999, 1031
BauI CACGAG 1 cut(s) 306
BbsI GAAGAC 1 cut(s) 408
Bbv12I GWGCWC 4 cut(s) 231, 778, 1180, 1834
BbvCI CCTCAGC 1 cut(s) 210
BbvI GCAGC 8 cut(s) 765, 1070, 1394, 1560, 1571, 1589, 1809, 2006
BccI CCATC 5 cut(s) 295, 841, 953, 1489, 1678
BceAI ACGGC 1 cut(s) 1477
BcgI CGANNNNNNTGC 4 cut(s) 1788, 1814, 1822, 1848
BcoDI GTCTC 8 cut(s) 37, 148, 787, 1125, 1184, 1325, 1325, 2052
BfaI CTAG 5 cut(s) 164, 491, 605, 779, 1677
BglI GCCNNNNNGGC 1 cut(s) 1927
Bme18I GGWCC 3 cut(s) 731, 1356, 1738
BmeT110I CYCGRG 1 cut(s) 1322
BmgT120I GGNCC 3 cut(s) 731, 1356, 1738
BmiI GGNNCC 2 cut(s) 39, 1740
BmsI GCATC 7 cut(s) 163, 238, 987, 1233, 1525, 1546, 2106
BpiI GAAGAC 1 cut(s) 408
BplI GAGNNNNNCTC 4 cut(s) 128, 160, 1122, 1154
Bpu10I CCTNAGC 1 cut(s) 210
BpuEI CTTGAG 6 cut(s) 920, 1055, 1165, 1463, 1644, 1985
BsaI GGTCTC 2 cut(s) 1184, 2052
BsaJI CCNNGG 4 cut(s) 437, 586, 1444, 1472
BsaWI WCCGGW 1 cut(s) 1279
BsaXI ACNNNNNCTCC 2 cut(s) 607, 637
Bsc4I CCNNNNNNNGG 5 cut(s) 391, 587, 1353, 1723, 1867
Bse118I RCCGGY 1 cut(s) 1926
Bse3DI GCAATG 4 cut(s) 733, 1527, 1947, 1996
BseDI CCNNGG 4 cut(s) 437, 586, 1444, 1472
BseGI GGATG 7 cut(s) 253, 306, 381, 1248, 1288, 1440, 1689
BseLI CCNNNNNNNGG 5 cut(s) 391, 587, 1353, 1723, 1867
BseMI GCAATG 4 cut(s) 733, 1527, 1947, 1996
BseMII CTCAG 2 cut(s) 201, 2022
BsePI GCGCGC 1 cut(s) 1613
BseRI GAGGAG 7 cut(s) 227, 562, 1052, 1055, 1202, 1439, 1520
BseSI GKGCMC 2 cut(s) 939, 1180
BseXI GCAGC 8 cut(s) 765, 1070, 1394, 1560, 1571, 1589, 1809, 2006
BseYI CCCAGC 1 cut(s) 1642
BsgI GTGCAG 2 cut(s) 471, 1780
Bsh1236I CGCG 2 cut(s) 1615, 1617
BshFI GGCC 3 cut(s) 152, 335, 674
BsiHKAI GWGCWC 4 cut(s) 231, 778, 1180, 1834
BsiHKCI CYCGRG 1 cut(s) 1322
BsiSI CCGG 2 cut(s) 1280, 1927
BslFI GGGAC 3 cut(s) 107, 986, 1659
BslI CCNNNNNNNGG 5 cut(s) 391, 587, 1353, 1723, 1867
BsmAI GTCTC 8 cut(s) 37, 148, 787, 1125, 1184, 1325, 1325, 2052
BsmBI CGTCTC 1 cut(s) 1325
BsmFI GGGAC 3 cut(s) 107, 986, 1659
BsmI GAATGC 1 cut(s) 70
BsnI GGCC 3 cut(s) 152, 335, 674
Bso31I GGTCTC 2 cut(s) 1184, 2052
BsoBI CYCGRG 1 cut(s) 1322
Bsp1286I GDGCHC 5 cut(s) 231, 778, 939, 1180, 1834
Bsp1407I TGTACA 1 cut(s) 2019
Bsp143I GATC 4 cut(s) 685, 895, 1009, 1708
BspANI GGCC 3 cut(s) 152, 335, 674
BspCNI CTCAG 2 cut(s) 202, 2021
BspFNI CGCG 2 cut(s) 1615, 1617
BspHI TCATGA 2 cut(s) 837, 1650
BspLI GGNNCC 2 cut(s) 39, 1740
BspPI GGATC 2 cut(s) 903, 1004
BspTNI GGTCTC 2 cut(s) 1184, 2052
BsrDI GCAATG 4 cut(s) 733, 1527, 1947, 1996
BsrFI RCCGGY 1 cut(s) 1926
BsrGI TGTACA 1 cut(s) 2019
BssAI RCCGGY 1 cut(s) 1926
BssECI CCNNGG 4 cut(s) 437, 586, 1444, 1472
BssHII GCGCGC 1 cut(s) 1613
BssMI GATC 4 cut(s) 685, 895, 1009, 1708
BssSI CACGAG 1 cut(s) 306
BssT1I CCWWGG 3 cut(s) 437, 586, 1444
Bst2BI CACGAG 1 cut(s) 306
Bst4CI ACNGT 2 cut(s) 634, 1878
Bst6I CTCTTC 2 cut(s) 1229, 1308
BstAPI GCANNNNNTGC 1 cut(s) 773
BstAUI TGTACA 1 cut(s) 2019
BstC8I GCNNGC 7 cut(s) 121, 765, 891, 1380, 1395, 1615, 1932
BstDEI CTNAG 6 cut(s) 42, 210, 326, 1119, 1712, 2008
BstF5I GGATG 7 cut(s) 253, 306, 381, 1248, 1288, 1440, 1689
BstFNI CGCG 2 cut(s) 1615, 1617
BstHHI GCGC 2 cut(s) 1615, 1617
BstKTI GATC 4 cut(s) 688, 898, 1012, 1711
BstMAI GTCTC 8 cut(s) 37, 148, 787, 1125, 1184, 1325, 1325, 2052
BstMBI GATC 4 cut(s) 685, 895, 1009, 1708
BstMWI GCNNNNNNNGC 9 cut(s) 125, 302, 311, 618, 723, 773, 1055, 1610, 1927
BstNSI RCATGY 3 cut(s) 893, 1138, 1921
BstSLI GKGCMC 2 cut(s) 939, 1180
BstUI CGCG 2 cut(s) 1615, 1617
BstV1I GCAGC 8 cut(s) 765, 1070, 1394, 1560, 1571, 1589, 1809, 2006
BstV2I GAAGAC 1 cut(s) 408
BstX2I RGATCY 2 cut(s) 895, 1009
BstXI CCANNNNNNTGG 2 cut(s) 76, 593
BstYI RGATCY 2 cut(s) 895, 1009
BsuRI GGCC 3 cut(s) 152, 335, 674
BtsCI GGATG 7 cut(s) 253, 306, 381, 1248, 1288, 1440, 1689
BtsI GCAGTG 2 cut(s) 1768, 1904
BtsIMutI CAGTG 3 cut(s) 1768, 1904, 1907
Cac8I GCNNGC 7 cut(s) 121, 765, 891, 1380, 1395, 1615, 1932
CciI TCATGA 2 cut(s) 837, 1650
CfoI GCGC 2 cut(s) 1615, 1617
Cfr10I RCCGGY 1 cut(s) 1926
Cfr13I GGNCC 3 cut(s) 731, 1356, 1738
CseI GACGC 2 cut(s) 215, 2081
Csp6I GTAC 3 cut(s) 160, 349, 2020
CspCI CAANNNNNGTGG 2 cut(s) 1798, 1833
CviQI GTAC 3 cut(s) 160, 349, 2020
DdeI CTNAG 6 cut(s) 42, 210, 326, 1119, 1712, 2008
DpnI GATC 4 cut(s) 687, 897, 1011, 1710
DpnII GATC 4 cut(s) 685, 895, 1009, 1708
EaeI YGGCCR 1 cut(s) 672
Eam1104I CTCTTC 2 cut(s) 1229, 1308
EarI CTCTTC 2 cut(s) 1229, 1308
Eco130I CCWWGG 3 cut(s) 437, 586, 1444
Eco31I GGTCTC 2 cut(s) 1184, 2052
Eco47I GGWCC 3 cut(s) 731, 1356, 1738
Eco57I CTGAAG 1 cut(s) 1931
Eco88I CYCGRG 1 cut(s) 1322
EcoT14I CCWWGG 3 cut(s) 437, 586, 1444
EcoT22I ATGCAT 1 cut(s) 1248
ErhI CCWWGG 3 cut(s) 437, 586, 1444
Esp3I CGTCTC 1 cut(s) 1325
FaqI GGGAC 3 cut(s) 107, 986, 1659
FauI CCCGC 1 cut(s) 605
FauNDI CATATG 2 cut(s) 89, 1942
FokI GGATG 7 cut(s) 260, 313, 368, 1255, 1295, 1427, 1696
FspBI CTAG 5 cut(s) 164, 491, 605, 779, 1677
GlaI GCGC 2 cut(s) 1614, 1616
GsaI CCCAGC 1 cut(s) 1646
HaeIII GGCC 3 cut(s) 152, 335, 674
HapII CCGG 2 cut(s) 1280, 1927
HgaI GACGC 2 cut(s) 215, 2081
HhaI GCGC 2 cut(s) 1615, 1617
Hin6I GCGC 2 cut(s) 1613, 1615
HinP1I GCGC 2 cut(s) 1613, 1615
HincII GTYRAC 1 cut(s) 577
HindII GTYRAC 1 cut(s) 577
HinfI GANTC 8 cut(s) 30, 271, 322, 824, 1427, 1647, 1882, 2054
HpaII CCGG 2 cut(s) 1280, 1927
HphI GGTGA 7 cut(s) 633, 890, 1132, 1240, 1460, 1850, 2024
Hpy166II GTNNAC 5 cut(s) 577, 637, 708, 1178, 1512
Hpy188I TCNGA 7 cut(s) 37, 502, 522, 541, 572, 829, 1166
Hpy188III TCNNGA 7 cut(s) 308, 838, 899, 1322, 1324, 1651, 2051
Hpy8I GTNNAC 5 cut(s) 577, 637, 708, 1178, 1512
Hpy99I CGWCG 1 cut(s) 1307
HpyCH4III ACNGT 2 cut(s) 634, 1878
HpyCH4IV ACGT 3 cut(s) 351, 468, 863
HpyF10VI GCNNNNNNNGC 9 cut(s) 125, 302, 311, 618, 723, 773, 1055, 1610, 1927
HpyF3I CTNAG 6 cut(s) 42, 210, 326, 1119, 1712, 2008
HpySE526I ACGT 3 cut(s) 351, 468, 863
HspAI GCGC 2 cut(s) 1613, 1615
Kzo9I GATC 4 cut(s) 685, 895, 1009, 1708
LmnI GCTCC 1 cut(s) 37
LpnPI CCDG 9 cut(s) 543, 1293, 1628, 1740, 1823, 1874, 1940, 1995, 2036
Lsp1109I GCAGC 8 cut(s) 765, 1070, 1394, 1560, 1571, 1589, 1809, 2006
LweI GCATC 7 cut(s) 163, 238, 987, 1233, 1525, 1546, 2106
MaeI CTAG 5 cut(s) 164, 491, 605, 779, 1677
MaeII ACGT 3 cut(s) 351, 468, 863
MaeIII GTNAC 2 cut(s) 623, 1298
MalI GATC 4 cut(s) 687, 897, 1011, 1710
MboI GATC 4 cut(s) 685, 895, 1009, 1708
MfeI CAATTG 1 cut(s) 786
MflI RGATCY 2 cut(s) 895, 1009
MhlI GDGCHC 5 cut(s) 231, 778, 939, 1180, 1834
MlsI TGGCCA 1 cut(s) 674
MluNI TGGCCA 1 cut(s) 674
MlyI GAGTC 4 cut(s) 39, 280, 1436, 1641
MmeI TCCRAC 1 cut(s) 451
Mox20I TGGCCA 1 cut(s) 674
Mph1103I ATGCAT 1 cut(s) 1248
MscI TGGCCA 1 cut(s) 674
MseI TTAA 4 cut(s) 266, 317, 371, 414
MslI CAYNNNNRTG 3 cut(s) 947, 1897, 2010
Msp20I TGGCCA 1 cut(s) 674
MspA1I CMGCKG 1 cut(s) 1580
MspI CCGG 2 cut(s) 1280, 1927
MunI CAATTG 1 cut(s) 786
Mva1269I GAATGC 1 cut(s) 70
MvnI CGCG 2 cut(s) 1615, 1617
MwoI GCNNNNNNNGC 9 cut(s) 125, 302, 311, 618, 723, 773, 1055, 1610, 1927
NdeI CATATG 2 cut(s) 89, 1942
NdeII GATC 4 cut(s) 685, 895, 1009, 1708
NlaIV GGNNCC 2 cut(s) 39, 1740
NmeAIII GCCGAG 3 cut(s) 272, 1497, 1813
NmuCI GTSAC 1 cut(s) 1298
NsiI ATGCAT 1 cut(s) 1248
NspI RCATGY 3 cut(s) 893, 1138, 1921
OliI CACNNNNGTG 1 cut(s) 2010
PaeI GCATGC 1 cut(s) 893
PaeR7I CTCGAG 1 cut(s) 1322
PagI TCATGA 2 cut(s) 837, 1650
PauI GCGCGC 1 cut(s) 1613
PctI GAATGC 1 cut(s) 70
PfeI GAWTC 4 cut(s) 322, 824, 1882, 2054
PflMI CCANNNNNTGG 2 cut(s) 391, 1353
PleI GAGTC 4 cut(s) 38, 279, 1435, 1641
PpsI GAGTC 4 cut(s) 38, 279, 1435, 1641
Psp1406I AACGTT 1 cut(s) 468
PspFI CCCAGC 1 cut(s) 1642
PspN4I GGNNCC 2 cut(s) 39, 1740
PspPI GGNCC 3 cut(s) 731, 1356, 1738
PsuI RGATCY 2 cut(s) 895, 1009
PteI GCGCGC 1 cut(s) 1613
RsaI GTAC 3 cut(s) 161, 350, 2021
RsaNI GTAC 3 cut(s) 160, 349, 2020
RseI CAYNNNNRTG 3 cut(s) 947, 1897, 2010
SaqAI TTAA 4 cut(s) 266, 317, 371, 414
Sau3AI GATC 4 cut(s) 685, 895, 1009, 1708
Sau96I GGNCC 3 cut(s) 731, 1356, 1738
SchI GAGTC 4 cut(s) 39, 280, 1436, 1641
SduI GDGCHC 5 cut(s) 231, 778, 939, 1180, 1834
SfaNI GCATC 7 cut(s) 163, 238, 987, 1233, 1525, 1546, 2106
Sfr274I CTCGAG 1 cut(s) 1322
SinI GGWCC 3 cut(s) 731, 1356, 1738
SlaI CTCGAG 1 cut(s) 1322
SmiMI CAYNNNNRTG 3 cut(s) 947, 1897, 2010
SmlI CTYRAG 7 cut(s) 899, 1034, 1144, 1322, 1478, 1659, 2000
SmoI CTYRAG 7 cut(s) 899, 1034, 1144, 1322, 1478, 1659, 2000
SphI GCATGC 1 cut(s) 893
SspMI CTAG 5 cut(s) 164, 491, 605, 779, 1677
StyI CCWWGG 3 cut(s) 437, 586, 1444
TaaI ACNGT 2 cut(s) 634, 1878
TaiI ACGT 3 cut(s) 354, 471, 866
TaqI TCGA 3 cut(s) 845, 1323, 1437
TaqII GACCGA 1 cut(s) 1373
TatI WGTACW 1 cut(s) 2019
TauI GCSGC 6 cut(s) 428, 1058, 1607, 1620, 1704, 1734
TfiI GAWTC 4 cut(s) 322, 824, 1882, 2054
Tru1I TTAA 4 cut(s) 266, 317, 371, 414
Tru9I TTAA 4 cut(s) 266, 317, 371, 414
TscAI CASTG 3 cut(s) 1768, 1904, 1914
TseFI GTSAC 1 cut(s) 1298
TseI GCWGC 8 cut(s) 753, 1058, 1382, 1548, 1559, 1577, 1822, 1994
Tsp45I GTSAC 1 cut(s) 1298
TspRI CASTG 3 cut(s) 1768, 1904, 1914
Van91I CCANNNNNTGG 2 cut(s) 391, 1353
VneI GTGCAC 1 cut(s) 1176
VpaK11BI GGWCC 3 cut(s) 731, 1356, 1738
XapI RAATTY 4 cut(s) 71, 82, 566, 1103
XceI RCATGY 3 cut(s) 893, 1138, 1921
XhoI CTCGAG 1 cut(s) 1322
XspI CTAG 5 cut(s) 164, 491, 605, 779, 1677
Zsp2I ATGCAT 1 cut(s) 1248
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.