Rmu_sc0006537.1_g000030
ERF Family

Belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006537.1
Physical Location & Seq
Reverse (-)
119694 .. 121693
2000 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006537.1_g000030.1.cds

Sequence Viewer

Length: 1056 bp
atggaaccatatgagaatgaggacagaggacaaggtggtcttcctatctccattataaccctttggtgtggcctactgtcaggggccgcacttgtaatgccgcaagcatccttgtccagagttattagtaaagcctttgagccaactcggctcaagaagctcactacgatgacagacatgaagacaaaccaacaaagattcgattggtatgaccagcaactcggagaacttgcgggggtacccaacaagttaattgatatcactaatgtgttggaccgcgtcgacctagatgggttggtggagcggatgatagaggtggagagcctaaaggaccgagttgtggcccttgaaaaatgtaaagctcgaggaagcggaagggagagaaatgaggaagaaactctcattccgaacgagcaaatgggggcaatgagtgatgcccttgatacactccaggtgacagtgcacaatatggcagaagatgtccgagccaccattgatgctttcaggaatgagctaatggagttgaataccaagctcaacctgaccatccgggcgatgggaaaccaacctgtgacggactacaggaaggtgaagataccggaacctcaagcttttggaggggcgcgagatgccaaggagctcgagaattacttatttgatatggaacaatacttccgatcagtgaagccagactcggaggaggtgaaggctgctgctgaaaggttgacagactacacattcgaagagaactctactaagaagactcagccgtttttgaatgccaatgtcaatagaaatataaggcctggaccgagtagaagtgggggaggggagtccaaattttccaactcaggaggaggggataggagaatagtgaatgcaagggacacgacatcgtccaagcctgctgcctcgacaggggcccatattcaatcgaaagaaatggaggatcagcaagagtcagaggaggaacctggttacatgggagctttaagattcttgggtgcggtggagaagcaccctattcacctaagaagtcccaggctaaaggcttga

Protein Analysis

351

Amino Acids

39.24

Weight (kDa)

5.35

Isoelectric Point (pI)

46.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000385)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g23713 FvH4_1g25744 FvH4_2g00261 FvH4_2g00262 FvH4_2g15681 FvH4_2g17851 FvH4_2g35550 FvH4_3g05280 FvH4_3g10531 FvH4_3g25910 FvH4_3g28953 FvH4_3g33371 FvH4_3g33536 FvH4_3g36090 FvH4_4g03471 FvH4_4g03480 FvH4_4g06701 FvH4_4g19351 FvH4_4g34281 FvH4_5g00040 FvH4_5g03811 FvH4_5g03812 FvH4_5g11822 FvH4_5g30921 FvH4_5g31701 FvH4_6g12161 FvH4_6g15222 FvH4_6g15223 FvH4_6g17701 FvH4_6g17710 FvH4_6g19301 FvH4_6g33011 FvH4_6g34501 FvH4_6g50161 FvH4_7g04111 FvH4_7g04120 FvH4_7g04121 FvH4_7g04122 FvH4_7g04123 FvH4_7g28231 FvH4_c7g00010
malus_domestica MD12G1084200.v1.1
prunus_persica Prupe.1G206200_v2.0.a1 Prupe.8G085600_v2.0.a1
pyrus_communis pycom01g11080 pycom02g20500 pycom09g18370 pycom12555g00210 pycom13g23120 pycom14g10590 pycom16g17620 pycom16g22750
rosa_chinensis RchiOBHm_Chr2g0137481 RchiOBHm_Chr6g0251961 RchiOBHm_Chr7g0185821
rosa_laevigata RLG00000005585 RLG00000010281 RLG00000010912 RLG00000030342 RLG00000034281
rosa_multiflora Rmu_sc0000096.1_g000010 Rmu_sc0002481.1_g000045 Rmu_sc0003598.1_g000009 Rmu_sc0003863.1_g000019 Rmu_sc0003973.1_g000002 Rmu_sc0004823.1_g000050 Rmu_sc0005621.1_g000007 Rmu_sc0006537.1_g000030 Rmu_sc0006608.1_g000014 Rmu_sc0008506.1_g000007 Rmu_sc0014428.1_g000001 Rmu_sc0035437.1_g000001 Rmu_ssc0000396.1_g000022
rosa_roxburghii Rroxscaffold_175G00432300 Rroxscaffold_17G00435390 Rroxscaffold_27G00446590 Rroxscaffold_29G00441820 Rroxscaffold_31G00438110 Rroxscaffold_32G00442750 Rroxscaffold_33G00439810 Rroxscaffold_37G00445160 Rroxscaffold_4G00306500 Rroxscaffold_4G00327700 Rroxscaffold_4G00332630 Rroxscaffold_52G00439360 Rroxscaffold_63G00444420 Rroxscaffold_76G00448580 Rroxscaffold_7G00156270
rosa_rugosa Rorug03G0295200
rosa_samantha Rh1BG433700 Rh1CG115400 Rh2AG676300 Rh2CG341800 Rh2DG381400 Rh3BG370100 Rh3BG370200 Rh4AG441600 Rh4BG076500 Rh4BG107400 Rh5BG005600 Rh6BG010100 Rh7BG000200
rosa_wichuraiana Rw0G003820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 56
AasI GACNNNNNNGTC 1 cut(s) 36
Acc65I GGTACC 1 cut(s) 238
AccB1I GGYRCC 1 cut(s) 238
AccBSI CCGCTC 1 cut(s) 304
AccI GTMKAC 1 cut(s) 282
AccII CGCG 2 cut(s) 279, 625
AciI CCGC 7 cut(s) 87, 101, 233, 277, 304, 372, 1007
AclWI GGATC 1 cut(s) 957
AcsI RAATTY 1 cut(s) 839
AfaI GTAC 1 cut(s) 240
AfiI CCNNNNNNNGG 3 cut(s) 340, 556, 918
AgsI TTSAA 4 cut(s) 350, 526, 778, 932
AjnI CCWGG 4 cut(s) 450, 805, 973, 1040
AleI CACNNNNGTG 1 cut(s) 266
AloI GAACNNNNNNTCC 2 cut(s) 657, 689
AluBI AGCT 7 cut(s) 160, 362, 514, 535, 611, 640, 989
AluI AGCT 7 cut(s) 160, 362, 514, 535, 611, 640, 989
Alw21I GWGCWC 2 cut(s) 465, 642
Alw44I GTGCAC 1 cut(s) 461
AlwI GGATC 1 cut(s) 957
Ama87I CYCGRG 2 cut(s) 363, 641
AoxI GGCC 5 cut(s) 70, 84, 342, 803, 921
ApaI GGGCCC 1 cut(s) 925
ApaLI GTGCAC 1 cut(s) 461
ApeKI GCWGC 3 cut(s) 710, 713, 908
ApoI RAATTY 1 cut(s) 839
ArsI GACNNNNNNTTYG 2 cut(s) 722, 754
Asp718I GGTACC 1 cut(s) 238
AspLEI GCGC 1 cut(s) 625
AspS9I GGNCC 7 cut(s) 84, 274, 331, 343, 809, 921, 922
AsuC2I CCSGG 1 cut(s) 551
AsuHPI GGTGA 4 cut(s) 466, 601, 715, 1019
AsuII TTCGAA 1 cut(s) 741
AvaI CYCGRG 2 cut(s) 363, 641
AvaII GGWCC 3 cut(s) 274, 331, 809
BaeGI GKGCMC 2 cut(s) 465, 925
BanI GGYRCC 1 cut(s) 238
BanII GRGCYC 2 cut(s) 642, 925
BbsI GAAGAC 3 cut(s) 32, 188, 767
Bbv12I GWGCWC 2 cut(s) 465, 642
BbvI GCAGC 3 cut(s) 697, 700, 895
BccI CCATC 3 cut(s) 284, 550, 554
BceAI ACGGC 1 cut(s) 754
BciT130I CCWGG 4 cut(s) 452, 807, 975, 1042
BcnI CCSGG 1 cut(s) 551
BfaI CTAG 1 cut(s) 287
BfmI CTRYAG 1 cut(s) 580
BglI GCCNNNNNGGC 1 cut(s) 148
BisI GCNGC 5 cut(s) 87, 101, 711, 714, 909
BlsI GCNGC 5 cut(s) 88, 102, 712, 715, 910
Bme1390I CCNGG 5 cut(s) 452, 551, 807, 975, 1042
Bme18I GGWCC 3 cut(s) 274, 331, 809
BmeT110I CYCGRG 2 cut(s) 363, 641
BmgT120I GGNCC 7 cut(s) 84, 274, 331, 343, 809, 921, 922
BmiI GGNNCC 7 cut(s) 6, 85, 240, 603, 922, 923, 972
BmrFI CCNGG 5 cut(s) 452, 551, 807, 975, 1042
BmsI GCATC 4 cut(s) 116, 424, 487, 619
BpiI GAAGAC 3 cut(s) 32, 188, 767
BpmI CTGGAG 1 cut(s) 434
Bpu14I TTCGAA 1 cut(s) 741
BpuEI CTTGAG 2 cut(s) 137, 591
BpuMI CCSGG 1 cut(s) 551
BsaJI CCNNGG 2 cut(s) 633, 1040
BsaWI WCCGGW 1 cut(s) 598
Bsc4I CCNNNNNNNGG 3 cut(s) 340, 556, 918
Bse3DI GCAATG 1 cut(s) 432
BseBI CCWGG 4 cut(s) 452, 807, 975, 1042
BseDI CCNNGG 2 cut(s) 633, 1040
BseGI GGATG 3 cut(s) 107, 312, 546
BseLI CCNNNNNNNGG 3 cut(s) 340, 556, 918
BseMI GCAATG 1 cut(s) 432
BseMII CTCAG 2 cut(s) 779, 864
BseRI GAGGAG 3 cut(s) 713, 870, 980
BseSI GKGCMC 2 cut(s) 465, 925
BseXI GCAGC 3 cut(s) 697, 700, 895
Bsh1236I CGCG 2 cut(s) 279, 625
BshFI GGCC 5 cut(s) 72, 86, 344, 805, 923
BshNI GGYRCC 1 cut(s) 238
BsiHKAI GWGCWC 2 cut(s) 465, 642
BsiHKCI CYCGRG 2 cut(s) 363, 641
BsiSI CCGG 2 cut(s) 550, 599
BslFI GGGAC 2 cut(s) 899, 1023
BslI CCNNNNNNNGG 3 cut(s) 340, 556, 918
BsmFI GGGAC 2 cut(s) 899, 1023
BsmI GAATGC 2 cut(s) 784, 883
BsnI GGCC 5 cut(s) 72, 86, 344, 805, 923
BsoBI CYCGRG 2 cut(s) 363, 641
Bsp119I TTCGAA 1 cut(s) 741
Bsp120I GGGCCC 1 cut(s) 921
Bsp1286I GDGCHC 3 cut(s) 465, 642, 925
Bsp143I GATC 2 cut(s) 677, 949
BspACI CCGC 7 cut(s) 87, 101, 233, 277, 304, 372, 1007
BspANI GGCC 5 cut(s) 72, 86, 344, 805, 923
BspCNI CTCAG 2 cut(s) 778, 863
BspFNI CGCG 2 cut(s) 279, 625
BspLI GGNNCC 7 cut(s) 6, 85, 240, 603, 922, 923, 972
BspPI GGATC 1 cut(s) 957
BspT104I TTCGAA 1 cut(s) 741
BspT107I GGYRCC 1 cut(s) 238
BsrBI CCGCTC 1 cut(s) 304
BsrDI GCAATG 1 cut(s) 432
BssECI CCNNGG 2 cut(s) 633, 1040
BssMI GATC 2 cut(s) 677, 949
BssT1I CCWWGG 1 cut(s) 633
Bst2UI CCWGG 4 cut(s) 452, 807, 975, 1042
Bst4CI ACNGT 2 cut(s) 78, 460
Bst6I CTCTTC 1 cut(s) 738
BstBI TTCGAA 1 cut(s) 741
BstC8I GCNNGC 2 cut(s) 105, 906
BstDEI CTNAG 4 cut(s) 756, 765, 850, 1031
BstF5I GGATG 3 cut(s) 107, 312, 546
BstFNI CGCG 2 cut(s) 279, 625
BstHHI GCGC 1 cut(s) 625
BstKTI GATC 2 cut(s) 680, 952
BstMBI GATC 2 cut(s) 677, 949
BstMWI GCNNNNNNNGC 3 cut(s) 148, 157, 629
BstNI CCWGG 4 cut(s) 452, 807, 975, 1042
BstSCI CCNGG 5 cut(s) 450, 549, 805, 973, 1040
BstSFI CTRYAG 1 cut(s) 580
BstSLI GKGCMC 2 cut(s) 465, 925
BstUI CGCG 2 cut(s) 279, 625
BstV1I GCAGC 3 cut(s) 697, 700, 895
BstV2I GAAGAC 3 cut(s) 32, 188, 767
BsuRI GGCC 5 cut(s) 72, 86, 344, 805, 923
BtgZI GCGATG 1 cut(s) 569
BtsCI GGATG 3 cut(s) 107, 312, 546
BtsIMutI CAGTG 2 cut(s) 465, 687
Cac8I GCNNGC 2 cut(s) 105, 906
CfoI GCGC 1 cut(s) 625
Cfr13I GGNCC 7 cut(s) 84, 274, 331, 343, 809, 921, 922
CseI GACGC 1 cut(s) 268
CsiI ACCWGGT 1 cut(s) 973
Csp6I GTAC 1 cut(s) 239
CviAII CATG 2 cut(s) 178, 982
CviQI GTAC 1 cut(s) 239
DdeI CTNAG 4 cut(s) 756, 765, 850, 1031
DpnI GATC 2 cut(s) 679, 951
DpnII GATC 2 cut(s) 677, 949
DrdI GACNNNNNNGTC 1 cut(s) 36
DseDI GACNNNNNNGTC 1 cut(s) 36
Eam1104I CTCTTC 1 cut(s) 738
EarI CTCTTC 1 cut(s) 738
Ecl136II GAGCTC 1 cut(s) 640
Eco130I CCWWGG 1 cut(s) 633
Eco147I AGGCCT 1 cut(s) 805
Eco24I GRGCYC 2 cut(s) 642, 925
Eco32I GATATC 1 cut(s) 259
Eco47I GGWCC 3 cut(s) 274, 331, 809
Eco53kI GAGCTC 1 cut(s) 640
Eco88I CYCGRG 2 cut(s) 363, 641
EcoICRI GAGCTC 1 cut(s) 640
EcoO109I RGGNCCY 1 cut(s) 921
EcoRII CCWGG 4 cut(s) 450, 805, 973, 1040
EcoRV GATATC 1 cut(s) 259
EcoT14I CCWWGG 1 cut(s) 633
EcoT38I GRGCYC 2 cut(s) 642, 925
ErhI CCWWGG 1 cut(s) 633
FaeI CATG 2 cut(s) 181, 985
FalI AAGNNNNNCTT 2 cut(s) 24, 56
FaqI GGGAC 2 cut(s) 899, 1023
FatI CATG 2 cut(s) 177, 981
FauI CCCGC 1 cut(s) 226
FauNDI CATATG 1 cut(s) 10
FblI GTMKAC 1 cut(s) 282
Fnu4HI GCNGC 5 cut(s) 87, 101, 711, 714, 909
FokI GGATG 3 cut(s) 94, 319, 533
FriOI GRGCYC 2 cut(s) 642, 925
Fsp4HI GCNGC 5 cut(s) 87, 101, 711, 714, 909
FspBI CTAG 1 cut(s) 287
GlaI GCGC 1 cut(s) 624
GluI GCNGC 5 cut(s) 87, 101, 711, 714, 909
GsuI CTGGAG 1 cut(s) 434
HaeIII GGCC 5 cut(s) 72, 86, 344, 805, 923
HapII CCGG 2 cut(s) 550, 599
HgaI GACGC 1 cut(s) 268
HhaI GCGC 1 cut(s) 625
Hin1II CATG 2 cut(s) 181, 985
Hin6I GCGC 1 cut(s) 623
HinP1I GCGC 1 cut(s) 623
HincII GTYRAC 2 cut(s) 283, 726
HindII GTYRAC 2 cut(s) 283, 726
HindIII AAGCTT 1 cut(s) 609
HinfI GANTC 6 cut(s) 198, 692, 763, 833, 959, 996
HpaII CCGG 2 cut(s) 550, 599
HphI GGTGA 4 cut(s) 466, 601, 715, 1019
Hpy166II GTNNAC 3 cut(s) 283, 463, 726
Hpy188I TCNGA 6 cut(s) 224, 408, 485, 677, 697, 964
Hpy188III TCNNGA 5 cut(s) 117, 154, 505, 643, 852
Hpy8I GTNNAC 3 cut(s) 283, 463, 726
Hpy99I CGWCG 1 cut(s) 284
HpyAV CCTTC 3 cut(s) 369, 580, 700
HpyCH4III ACNGT 2 cut(s) 78, 460
HpyCH4V TGCA 2 cut(s) 463, 881
HpyF10VI GCNNNNNNNGC 3 cut(s) 148, 157, 629
HpyF3I CTNAG 4 cut(s) 756, 765, 850, 1031
Hsp92II CATG 2 cut(s) 181, 985
HspAI GCGC 1 cut(s) 623
KpnI GGTACC 1 cut(s) 242
Kzo9I GATC 2 cut(s) 677, 949
LmnI GCTCC 3 cut(s) 301, 637, 986
Lsp1109I GCAGC 3 cut(s) 697, 700, 895
LweI GCATC 4 cut(s) 116, 424, 487, 619
MabI ACCWGGT 1 cut(s) 973
MaeI CTAG 1 cut(s) 287
MaeIII GTNAC 3 cut(s) 454, 571, 977
MalI GATC 2 cut(s) 679, 951
MbiI CCGCTC 1 cut(s) 304
MboI GATC 2 cut(s) 677, 949
MboII GAAGA 7 cut(s) 32, 193, 404, 488, 604, 755, 772
MhlI GDGCHC 3 cut(s) 465, 642, 925
MluCI AATT 3 cut(s) 252, 646, 839
MlyI GAGTC 4 cut(s) 686, 757, 842, 968
MmeI TCCRAC 2 cut(s) 252, 870
MseI TTAA 2 cut(s) 251, 992
MslI CAYNNNNRTG 2 cut(s) 167, 266
MspI CCGG 2 cut(s) 550, 599
MspR9I CCNGG 5 cut(s) 452, 551, 807, 975, 1042
Mva1269I GAATGC 2 cut(s) 784, 883
MvaI CCWGG 4 cut(s) 452, 807, 975, 1042
MvnI CGCG 2 cut(s) 279, 625
MwoI GCNNNNNNNGC 3 cut(s) 148, 157, 629
NciI CCSGG 1 cut(s) 551
NdeI CATATG 1 cut(s) 10
NdeII GATC 2 cut(s) 677, 949
NlaIII CATG 2 cut(s) 181, 985
NlaIV GGNNCC 7 cut(s) 6, 85, 240, 603, 922, 923, 972
NmeAIII GCCGAG 1 cut(s) 127
NmuCI GTSAC 2 cut(s) 454, 571
NspV TTCGAA 1 cut(s) 741
OliI CACNNNNGTG 1 cut(s) 266
PaeR7I CTCGAG 2 cut(s) 363, 641
PceI AGGCCT 1 cut(s) 805
PctI GAATGC 2 cut(s) 784, 883
PfeI GAWTC 2 cut(s) 198, 996
PflFI GACNNNGTC 2 cut(s) 278, 895
PkrI GCNGC 5 cut(s) 88, 102, 712, 715, 910
PleI GAGTC 4 cut(s) 686, 757, 841, 967
PpsI GAGTC 4 cut(s) 686, 757, 841, 967
PsiI TTATAA 1 cut(s) 56
Psp124BI GAGCTC 1 cut(s) 642
Psp6I CCWGG 4 cut(s) 450, 805, 973, 1040
PspGI CCWGG 4 cut(s) 450, 805, 973, 1040
PspN4I GGNNCC 7 cut(s) 6, 85, 240, 603, 922, 923, 972
PspOMI GGGCCC 1 cut(s) 921
PspPI GGNCC 7 cut(s) 84, 274, 331, 343, 809, 921, 922
PspXI VCTCGAGB 1 cut(s) 363
PsyI GACNNNGTC 2 cut(s) 278, 895
RsaI GTAC 1 cut(s) 240
RsaNI GTAC 1 cut(s) 239
RseI CAYNNNNRTG 2 cut(s) 167, 266
SacI GAGCTC 1 cut(s) 642
SalI GTCGAC 1 cut(s) 281
SaqAI TTAA 2 cut(s) 251, 992
SatI GCNGC 5 cut(s) 87, 101, 711, 714, 909
Sau3AI GATC 2 cut(s) 677, 949
Sau96I GGNCC 7 cut(s) 84, 274, 331, 343, 809, 921, 922
SchI GAGTC 4 cut(s) 686, 757, 842, 968
ScrFI CCNGG 5 cut(s) 452, 551, 807, 975, 1042
SduI GDGCHC 3 cut(s) 465, 642, 925
SexAI ACCWGGT 1 cut(s) 973
SfaNI GCATC 4 cut(s) 116, 424, 487, 619
SfcI CTRYAG 1 cut(s) 580
Sfr274I CTCGAG 2 cut(s) 363, 641
SfuI TTCGAA 1 cut(s) 741
SinI GGWCC 3 cut(s) 274, 331, 809
SlaI CTCGAG 2 cut(s) 363, 641
SmiMI CAYNNNNRTG 2 cut(s) 167, 266
SmlI CTYRAG 4 cut(s) 152, 363, 606, 641
SmoI CTYRAG 4 cut(s) 152, 363, 606, 641
Sse9I AATT 3 cut(s) 252, 646, 839
SseBI AGGCCT 1 cut(s) 805
SsiI CCGC 7 cut(s) 87, 101, 233, 277, 304, 372, 1007
SspMI CTAG 1 cut(s) 287
SstI GAGCTC 1 cut(s) 642
StuI AGGCCT 1 cut(s) 805
StyD4I CCNGG 5 cut(s) 450, 549, 805, 973, 1040
StyI CCWWGG 1 cut(s) 633
TaaI ACNGT 2 cut(s) 78, 460
TaqI TCGA 7 cut(s) 201, 282, 364, 642, 741, 914, 935
TaqII GACCGA 2 cut(s) 348, 826
TasI AATT 3 cut(s) 252, 646, 839
TauI GCSGC 2 cut(s) 89, 103
TfiI GAWTC 2 cut(s) 198, 996
Tru1I TTAA 2 cut(s) 251, 992
Tru9I TTAA 2 cut(s) 251, 992
TscAI CASTG 2 cut(s) 465, 687
TseFI GTSAC 2 cut(s) 454, 571
TseI GCWGC 3 cut(s) 710, 713, 908
Tsp45I GTSAC 2 cut(s) 454, 571
TspDTI ATGAA 1 cut(s) 194
TspGWI ACGGA 1 cut(s) 590
TspRI CASTG 2 cut(s) 465, 687
Tth111I GACNNNGTC 2 cut(s) 278, 895
VneI GTGCAC 1 cut(s) 461
VpaK11BI GGWCC 3 cut(s) 274, 331, 809
XapI RAATTY 1 cut(s) 839
XcmI CCANNNNNNNNNTGG 1 cut(s) 553
XhoI CTCGAG 2 cut(s) 363, 641
XmiI GTMKAC 1 cut(s) 282
XspI CTAG 1 cut(s) 287
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.