Rmu_sc0003973.1_g000002
ERF Family

DNA RNA polymerases superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003973.1
OG0000385
Physical Location & Seq
Forward (+)
9824 .. 11909
2086 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003973.1_g000002.1.cds

Sequence Viewer

Length: 525 bp
atgatactcagagacaagtctaataaccagaatttggctggtggtatatctgaagctggaactacgatgactgaagctagaactgcaatttccgttggtatcagagccaactcgactcaagacacttgctacgatgactgggaaaatgacaaactaacaacgattcgattggacagagttgtgacccttgaaaaatcaaaagctcgaggaagcggaagcagaaaggagagaaatgaagaagaaactcatgttccgaatgagcaaatggggacgatgagtgatgctcttgatacgctccaggtgacagtgaatactatggcagaagatgttcgagccaccattgaggctttcaagaatgagctggtggagatgaatacccagctcaacctcaccatccatgcgatgagaaaccaacctatgacgaactacaagaaggtgaagatattggaacctcaagcttttggaggggcgcgagatgccaaggagcttgaaaatttcatatttgacatggaccaatacttatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Asp_protease_2 RVT_1 Retrotrans_gag rve

Protein Analysis

174

Amino Acids

19.61

Weight (kDa)

4.95

Isoelectric Point (pI)

24.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000385)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g23713 FvH4_1g25744 FvH4_2g00261 FvH4_2g00262 FvH4_2g15681 FvH4_2g17851 FvH4_2g35550 FvH4_3g05280 FvH4_3g10531 FvH4_3g25910 FvH4_3g28953 FvH4_3g33371 FvH4_3g33536 FvH4_3g36090 FvH4_4g03471 FvH4_4g03480 FvH4_4g06701 FvH4_4g19351 FvH4_4g34281 FvH4_5g00040 FvH4_5g03811 FvH4_5g03812 FvH4_5g11822 FvH4_5g30921 FvH4_5g31701 FvH4_6g12161 FvH4_6g15222 FvH4_6g15223 FvH4_6g17701 FvH4_6g17710 FvH4_6g19301 FvH4_6g33011 FvH4_6g34501 FvH4_6g50161 FvH4_7g04111 FvH4_7g04120 FvH4_7g04121 FvH4_7g04122 FvH4_7g04123 FvH4_7g28231 FvH4_c7g00010
malus_domestica MD12G1084200.v1.1
prunus_persica Prupe.1G206200_v2.0.a1 Prupe.8G085600_v2.0.a1
pyrus_communis pycom01g11080 pycom02g20500 pycom09g18370 pycom12555g00210 pycom13g23120 pycom14g10590 pycom16g17620 pycom16g22750
rosa_chinensis RchiOBHm_Chr2g0137481 RchiOBHm_Chr6g0251961 RchiOBHm_Chr7g0185821
rosa_laevigata RLG00000005585 RLG00000010281 RLG00000010912 RLG00000030342 RLG00000034281
rosa_multiflora Rmu_sc0000096.1_g000010 Rmu_sc0002481.1_g000045 Rmu_sc0003598.1_g000009 Rmu_sc0003863.1_g000019 Rmu_sc0003973.1_g000002 Rmu_sc0004823.1_g000050 Rmu_sc0005621.1_g000007 Rmu_sc0006537.1_g000030 Rmu_sc0006608.1_g000014 Rmu_sc0008506.1_g000007 Rmu_sc0014428.1_g000001 Rmu_sc0035437.1_g000001 Rmu_ssc0000396.1_g000022
rosa_roxburghii Rroxscaffold_175G00432300 Rroxscaffold_17G00435390 Rroxscaffold_27G00446590 Rroxscaffold_29G00441820 Rroxscaffold_31G00438110 Rroxscaffold_32G00442750 Rroxscaffold_33G00439810 Rroxscaffold_37G00445160 Rroxscaffold_4G00306500 Rroxscaffold_4G00327700 Rroxscaffold_4G00332630 Rroxscaffold_52G00439360 Rroxscaffold_63G00444420 Rroxscaffold_76G00448580 Rroxscaffold_7G00156270
rosa_rugosa Rorug03G0295200
rosa_samantha Rh1BG433700 Rh1CG115400 Rh2AG676300 Rh2CG341800 Rh2DG381400 Rh3BG370100 Rh3BG370200 Rh4AG441600 Rh4BG076500 Rh4BG107400 Rh5BG005600 Rh6BG010100 Rh7BG000200
rosa_wichuraiana Rw0G003820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 34
AccII CGCG 1 cut(s) 472
AciI CCGC 1 cut(s) 213
AcsI RAATTY 2 cut(s) 31, 493
AcuI CTGAAG 2 cut(s) 72, 93
AfiI CCNNNNNNNGG 1 cut(s) 34
AgsI TTSAA 3 cut(s) 191, 352, 491
AjnI CCWGG 1 cut(s) 297
AluBI AGCT 7 cut(s) 56, 77, 203, 361, 382, 458, 487
AluI AGCT 7 cut(s) 56, 77, 203, 361, 382, 458, 487
Alw26I GTCTC 1 cut(s) 6
Ama87I CYCGRG 1 cut(s) 204
ApoI RAATTY 2 cut(s) 31, 493
Asp700I GAANNNNTTC 1 cut(s) 327
AspLEI GCGC 1 cut(s) 472
AspS9I GGNCC 1 cut(s) 511
AsuHPI GGTGA 3 cut(s) 313, 382, 448
AvaI CYCGRG 1 cut(s) 204
AvaII GGWCC 1 cut(s) 511
BccI CCATC 1 cut(s) 401
BciT130I CCWGG 1 cut(s) 299
BcoDI GTCTC 1 cut(s) 6
BfaI CTAG 1 cut(s) 78
Bme1390I CCNGG 1 cut(s) 299
Bme18I GGWCC 1 cut(s) 511
BmeT110I CYCGRG 1 cut(s) 204
BmgT120I GGNCC 1 cut(s) 511
BmiI GGNNCC 1 cut(s) 450
BmrFI CCNGG 1 cut(s) 299
BmrI ACTGGG 1 cut(s) 148
BmsI GCATC 2 cut(s) 271, 466
BmuI ACTGGG 1 cut(s) 148
BplI GAGNNNNNCTC 2 cut(s) 268, 300
BpmI CTGGAG 1 cut(s) 281
BpuEI CTTGAG 2 cut(s) 102, 438
BsaJI CCNNGG 1 cut(s) 480
Bsc4I CCNNNNNNNGG 1 cut(s) 34
Bse1I ACTGG 1 cut(s) 143
BseBI CCWGG 1 cut(s) 299
BseDI CCNNGG 1 cut(s) 480
BseGI GGATG 1 cut(s) 393
BseLI CCNNNNNNNGG 1 cut(s) 34
BseMII CTCAG 1 cut(s) 22
BseNI ACTGG 1 cut(s) 143
BseYI CCCAGC 1 cut(s) 378
Bsh1236I CGCG 1 cut(s) 472
BsiHKCI CYCGRG 1 cut(s) 204
BslFI GGGAC 1 cut(s) 283
BslI CCNNNNNNNGG 1 cut(s) 34
BsmAI GTCTC 1 cut(s) 6
BsmFI GGGAC 1 cut(s) 283
BsoBI CYCGRG 1 cut(s) 204
BspACI CCGC 1 cut(s) 213
BspCNI CTCAG 1 cut(s) 21
BspFNI CGCG 1 cut(s) 472
BspLI GGNNCC 1 cut(s) 450
BsrI ACTGG 1 cut(s) 143
BssECI CCNNGG 1 cut(s) 480
BssT1I CCWWGG 1 cut(s) 480
Bst2UI CCWGG 1 cut(s) 299
Bst4CI ACNGT 1 cut(s) 307
BstDEI CTNAG 1 cut(s) 8
BstF5I GGATG 1 cut(s) 393
BstFNI CGCG 1 cut(s) 472
BstHHI GCGC 1 cut(s) 472
BstMAI GTCTC 1 cut(s) 6
BstMWI GCNNNNNNNGC 2 cut(s) 83, 476
BstNI CCWGG 1 cut(s) 299
BstSCI CCNGG 1 cut(s) 297
BstUI CGCG 1 cut(s) 472
BtgZI GCGATG 1 cut(s) 416
BtsCI GGATG 1 cut(s) 393
BtsIMutI CAGTG 1 cut(s) 312
CfoI GCGC 1 cut(s) 472
Cfr13I GGNCC 1 cut(s) 511
CviAII CATG 3 cut(s) 248, 398, 508
DdeI CTNAG 1 cut(s) 8
Eco130I CCWWGG 1 cut(s) 480
Eco47I GGWCC 1 cut(s) 511
Eco57I CTGAAG 2 cut(s) 72, 93
Eco88I CYCGRG 1 cut(s) 204
EcoRII CCWGG 1 cut(s) 297
EcoT14I CCWWGG 1 cut(s) 480
ErhI CCWWGG 1 cut(s) 480
FaeI CATG 3 cut(s) 251, 401, 511
FaiI YATR 8 cut(s) 47, 249, 317, 399, 419, 500, 509, 523
FaqI GGGAC 1 cut(s) 283
FatI CATG 3 cut(s) 247, 397, 507
FokI GGATG 1 cut(s) 380
FspBI CTAG 1 cut(s) 78
GlaI GCGC 1 cut(s) 471
GsaI CCCAGC 1 cut(s) 382
GsuI CTGGAG 1 cut(s) 281
HhaI GCGC 1 cut(s) 472
Hin1II CATG 3 cut(s) 251, 401, 511
Hin6I GCGC 1 cut(s) 470
HinP1I GCGC 1 cut(s) 470
HindIII AAGCTT 1 cut(s) 456
HinfI GANTC 2 cut(s) 115, 163
HphI GGTGA 3 cut(s) 313, 382, 448
Hpy188I TCNGA 4 cut(s) 11, 52, 104, 255
Hpy188III TCNNGA 3 cut(s) 119, 287, 352
HpyAV CCTTC 1 cut(s) 427
HpyCH4III ACNGT 1 cut(s) 307
HpyCH4V TGCA 1 cut(s) 86
HpyF10VI GCNNNNNNNGC 2 cut(s) 83, 476
HpyF3I CTNAG 1 cut(s) 8
Hsp92II CATG 3 cut(s) 251, 401, 511
HspAI GCGC 1 cut(s) 470
LmnI GCTCC 2 cut(s) 300, 484
LpnPI CCDG 8 cut(s) 24, 41, 42, 124, 284, 311, 347, 392
LweI GCATC 2 cut(s) 271, 466
MaeI CTAG 1 cut(s) 78
MaeIII GTNAC 2 cut(s) 181, 301
MboII GAAGA 4 cut(s) 248, 251, 335, 451
MluCI AATT 3 cut(s) 31, 87, 493
MlyI GAGTC 1 cut(s) 109
MnlI CCTC 5 cut(s) 200, 337, 398, 458, 462
MroXI GAANNNNTTC 1 cut(s) 327
MspR9I CCNGG 1 cut(s) 299
MvaI CCWGG 1 cut(s) 299
MvnI CGCG 1 cut(s) 472
MwoI GCNNNNNNNGC 2 cut(s) 83, 476
NlaIII CATG 3 cut(s) 251, 401, 511
NlaIV GGNNCC 1 cut(s) 450
NmuCI GTSAC 2 cut(s) 181, 301
PaeR7I CTCGAG 1 cut(s) 204
PdmI GAANNNNTTC 1 cut(s) 327
PfeI GAWTC 1 cut(s) 163
PflMI CCANNNNNTGG 1 cut(s) 34
PleI GAGTC 1 cut(s) 109
PpsI GAGTC 1 cut(s) 109
Psp6I CCWGG 1 cut(s) 297
PspFI CCCAGC 1 cut(s) 378
PspGI CCWGG 1 cut(s) 297
PspN4I GGNNCC 1 cut(s) 450
PspPI GGNCC 1 cut(s) 511
PspXI VCTCGAGB 1 cut(s) 204
Sau96I GGNCC 1 cut(s) 511
SchI GAGTC 1 cut(s) 109
ScrFI CCNGG 1 cut(s) 299
SfaNI GCATC 2 cut(s) 271, 466
Sfr274I CTCGAG 1 cut(s) 204
SinI GGWCC 1 cut(s) 511
SlaI CTCGAG 1 cut(s) 204
SmlI CTYRAG 3 cut(s) 117, 204, 453
SmoI CTYRAG 3 cut(s) 117, 204, 453
Sse9I AATT 3 cut(s) 31, 87, 493
SsiI CCGC 1 cut(s) 213
SspMI CTAG 1 cut(s) 78
StyD4I CCNGG 1 cut(s) 297
StyI CCWWGG 1 cut(s) 480
TaaI ACNGT 1 cut(s) 307
TaqI TCGA 4 cut(s) 113, 166, 205, 331
TasI AATT 3 cut(s) 31, 87, 493
TfiI GAWTC 1 cut(s) 163
TscAI CASTG 1 cut(s) 312
TseFI GTSAC 2 cut(s) 181, 301
Tsp45I GTSAC 2 cut(s) 181, 301
TspDTI ATGAA 3 cut(s) 249, 386, 487
TspGWI ACGGA 1 cut(s) 82
TspRI CASTG 1 cut(s) 312
Van91I CCANNNNNTGG 1 cut(s) 34
VpaK11BI GGWCC 1 cut(s) 511
XapI RAATTY 2 cut(s) 31, 493
XcmI CCANNNNNNNNNTGG 1 cut(s) 35
XhoI CTCGAG 1 cut(s) 204
XmnI GAANNNNTTC 1 cut(s) 327
XspI CTAG 1 cut(s) 78
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.