Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000096.1

Orthogroup ID

OG0000385

Physical Location & Seq

Genomic Coordinates Forward (+)

42594 .. 43523

Gene Structure 930 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000096.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

atggcagaagatgtccgagacaccattgatgctttcaggaacgagctactggagatgaatactaagctcaacctaaccatcagtgcgataggaaatcaacctgtgacggactacaggaaggtaaagatatcggaacctcaagcttttagaggggcgctagatgctaaggagcttgagagaatttcttatttcatatggcactatgtcaataaacccatcagacaacagagctcagacgacagaattcacatctctcaaaccaaaaccactgaactgaaaaatccagcgccaaatccaacatcaatctcttctattcgttcactatactgctggcaaagacagaggctaggtggaagacggaggtctgcgaaaacccaaatttctgaaaacccaaacctcctcaaaaccttcaacccagtctctgcgacggtcgacggcagcggcacgacgacctcgtcttgttctcgccgggaggatccgaagctcaatcaggtccacgtggctgaaaggagaggcctttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009628 GO:0009651 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0097159 GO:0140096 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 map04016 map04075

Pfam Domains

Protein Families

Pkinase

Protein Analysis

173

Amino Acids

19.69

Weight (kDa)

9.77

Isoelectric Point (pI)

55.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000385)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g23713 FvH4_1g25744 FvH4_2g00261 FvH4_2g00262 FvH4_2g15681 FvH4_2g17851 FvH4_2g35550 FvH4_3g05280 FvH4_3g10531 FvH4_3g25910 FvH4_3g28953 FvH4_3g33371 FvH4_3g33536 FvH4_3g36090 FvH4_4g03471 FvH4_4g03480 FvH4_4g06701 FvH4_4g19351 FvH4_4g34281 FvH4_5g00040 FvH4_5g03811 FvH4_5g03812 FvH4_5g11822 FvH4_5g30921 FvH4_5g31701 FvH4_6g12161 FvH4_6g15222 FvH4_6g15223 FvH4_6g17701 FvH4_6g17710 FvH4_6g19301 FvH4_6g33011 FvH4_6g34501 FvH4_6g50161 FvH4_7g04111 FvH4_7g04120 FvH4_7g04121 FvH4_7g04122 FvH4_7g04123 FvH4_7g28231 FvH4_c7g00010
malus_domestica	MD12G1084200.v1.1
prunus_persica	Prupe.1G206200_v2.0.a1 Prupe.8G085600_v2.0.a1
pyrus_communis	pycom01g11080 pycom02g20500 pycom09g18370 pycom12555g00210 pycom13g23120 pycom14g10590 pycom16g17620 pycom16g22750
rosa_chinensis	RchiOBHm_Chr2g0137481 RchiOBHm_Chr6g0251961 RchiOBHm_Chr7g0185821
rosa_laevigata	RLG00000005585 RLG00000010281 RLG00000010912 RLG00000030342 RLG00000034281
rosa_multiflora	Rmu_sc0000096.1_g000010 Rmu_sc0002481.1_g000045 Rmu_sc0003598.1_g000009 Rmu_sc0003863.1_g000019 Rmu_sc0003973.1_g000002 Rmu_sc0004823.1_g000050 Rmu_sc0005621.1_g000007 Rmu_sc0006537.1_g000030 Rmu_sc0006608.1_g000014 Rmu_sc0008506.1_g000007 Rmu_sc0014428.1_g000001 Rmu_sc0035437.1_g000001 Rmu_ssc0000396.1_g000022
rosa_roxburghii	Rroxscaffold_175G00432300 Rroxscaffold_17G00435390 Rroxscaffold_27G00446590 Rroxscaffold_29G00441820 Rroxscaffold_31G00438110 Rroxscaffold_32G00442750 Rroxscaffold_33G00439810 Rroxscaffold_37G00445160 Rroxscaffold_4G00306500 Rroxscaffold_4G00327700 Rroxscaffold_4G00332630 Rroxscaffold_52G00439360 Rroxscaffold_63G00444420 Rroxscaffold_76G00448580 Rroxscaffold_7G00156270
rosa_rugosa	Rorug03G0295200
rosa_samantha	Rh1BG433700 Rh1CG115400 Rh2AG676300 Rh2CG341800 Rh2DG381400 Rh3BG370100 Rh3BG370200 Rh4AG441600 Rh4BG076500 Rh4BG107400 Rh5BG005600 Rh6BG010100 Rh7BG000200
rosa_wichuraiana	Rw0G003820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	454
AccI	GTMKAC	1 cut(s)	432
AciI	CCGC	1 cut(s)	441
AclWI	GGATC	2 cut(s)	470, 483
AcsI	RAATTY	3 cut(s)	180, 243, 378
AcvI	CACGTG	1 cut(s)	499
AgsI	TTSAA	1 cut(s)	412
AluBI	AGCT	6 cut(s)	46, 67, 143, 172, 231, 484
AluI	AGCT	6 cut(s)	46, 67, 143, 172, 231, 484
Alw21I	GWGCWC	1 cut(s)	233
Alw26I	GTCTC	2 cut(s)	12, 424
AlwI	GGATC	2 cut(s)	470, 483
AlwNI	CAGNNNCTG	1 cut(s)	422
AoxI	GGCC	1 cut(s)	514
ApeKI	GCWGC	1 cut(s)	438
ApoI	RAATTY	3 cut(s)	180, 243, 378
AspLEI	GCGC	2 cut(s)	157, 289
AspS9I	GGNCC	1 cut(s)	493
AsuC2I	CCSGG	1 cut(s)	470
AvaII	GGWCC	1 cut(s)	493
BamHI	GGATCC	1 cut(s)	475
BanII	GRGCYC	1 cut(s)	233
BbrPI	CACGTG	1 cut(s)	499
BbsI	GAAGAC	1 cut(s)	361
Bbv12I	GWGCWC	1 cut(s)	233
BbvI	GCAGC	1 cut(s)	450
BccI	CCATC	2 cut(s)	86, 224
BceAI	ACGGC	1 cut(s)	451
BcnI	CCSGG	1 cut(s)	470
BcoDI	GTCTC	2 cut(s)	12, 424
BfaI	CTAG	2 cut(s)	158, 347
BfmI	CTRYAG	1 cut(s)	112
BfoI	RGCGCY	2 cut(s)	158, 290
BisI	GCNGC	2 cut(s)	439, 442
BlsI	GCNGC	2 cut(s)	440, 443
Bme1390I	CCNGG	1 cut(s)	470
Bme18I	GGWCC	1 cut(s)	493
BmgT120I	GGNCC	1 cut(s)	493
BmiI	GGNNCC	2 cut(s)	135, 477
BmrFI	CCNGG	1 cut(s)	470
BmrI	ACTGGG	1 cut(s)	410
BmsI	GCATC	2 cut(s)	19, 151
BmuI	ACTGGG	1 cut(s)	410
BoxI	GACNNNNGTC	1 cut(s)	361
BpiI	GAAGAC	1 cut(s)	361
BpmI	CTGGAG	1 cut(s)	71
Bpu10I	CCTNAGC	1 cut(s)	165
BpuEI	CTTGAG	2 cut(s)	123, 194
BpuMI	CCSGG	1 cut(s)	470
BsaAI	YACGTR	1 cut(s)	499
Bse1I	ACTGG	2 cut(s)	54, 416
BseMII	CTCAG	1 cut(s)	246
BseNI	ACTGG	2 cut(s)	54, 416
BseRI	GAGGAG	1 cut(s)	389
BseXI	GCAGC	1 cut(s)	450
Bsh1285I	CGRYCG	1 cut(s)	432
BshFI	GGCC	1 cut(s)	516
BsiEI	CGRYCG	1 cut(s)	432
BsiHKAI	GWGCWC	1 cut(s)	233
BsiSI	CCGG	1 cut(s)	469
BsmAI	GTCTC	2 cut(s)	12, 424
BsnI	GGCC	1 cut(s)	516
Bsp1286I	GDGCHC	1 cut(s)	233
Bsp143I	GATC	1 cut(s)	475
BspACI	CCGC	1 cut(s)	441
BspANI	GGCC	1 cut(s)	516
BspCNI	CTCAG	1 cut(s)	245
BspLI	GGNNCC	2 cut(s)	135, 477
BspPI	GGATC	2 cut(s)	470, 483
BsrI	ACTGG	2 cut(s)	54, 416
BssMI	GATC	1 cut(s)	475
Bst4CI	ACNGT	1 cut(s)	430
Bst6I	CTCTTC	1 cut(s)	313
BstBAI	YACGTR	1 cut(s)	499
BstC8I	GCNNGC	1 cut(s)	332
BstDEI	CTNAG	3 cut(s)	63, 165, 232
BstH2I	RGCGCY	2 cut(s)	158, 290
BstHHI	GCGC	2 cut(s)	157, 289
BstKTI	GATC	1 cut(s)	478
BstMAI	GTCTC	2 cut(s)	12, 424
BstMBI	GATC	1 cut(s)	475
BstMCI	CGRYCG	1 cut(s)	432
BstMWI	GCNNNNNNNGC	1 cut(s)	161
BstPAI	GACNNNNGTC	1 cut(s)	361
BstSCI	CCNGG	1 cut(s)	468
BstSFI	CTRYAG	1 cut(s)	112
BstV1I	GCAGC	1 cut(s)	450
BstV2I	GAAGAC	1 cut(s)	361
BstX2I	RGATCY	1 cut(s)	475
BstYI	RGATCY	1 cut(s)	475
BsuRI	GGCC	1 cut(s)	516
BtsIMutI	CAGTG	2 cut(s)	88, 267
Cac8I	GCNNGC	1 cut(s)	332
CaiI	CAGNNNCTG	1 cut(s)	422
CfoI	GCGC	2 cut(s)	157, 289
Cfr13I	GGNCC	1 cut(s)	493
CviJI	RGCY	9 cut(s)	46, 67, 143, 172, 231, 346, 484, 503, 516
CviKI_1	RGCY	9 cut(s)	46, 67, 143, 172, 231, 346, 484, 503, 516
DdeI	CTNAG	3 cut(s)	63, 165, 232
DpnI	GATC	1 cut(s)	477
DpnII	GATC	1 cut(s)	475
DrdI	GACNNNNNNGTC	1 cut(s)	454
DseDI	GACNNNNNNGTC	1 cut(s)	454
Eam1104I	CTCTTC	1 cut(s)	313
EarI	CTCTTC	1 cut(s)	313
Ecl136II	GAGCTC	1 cut(s)	231
Eco147I	AGGCCT	1 cut(s)	516
Eco24I	GRGCYC	1 cut(s)	233
Eco32I	GATATC	1 cut(s)	129
Eco47I	GGWCC	1 cut(s)	493
Eco53kI	GAGCTC	1 cut(s)	231
Eco72I	CACGTG	1 cut(s)	499
EcoICRI	GAGCTC	1 cut(s)	231
EcoRI	GAATTC	1 cut(s)	243
EcoRV	GATATC	1 cut(s)	129
EcoT38I	GRGCYC	1 cut(s)	233
FaiI	YATR	4 cut(s)	194, 196, 204, 325
FauNDI	CATATG	1 cut(s)	194
FblI	GTMKAC	1 cut(s)	432
Fnu4HI	GCNGC	2 cut(s)	439, 442
FriOI	GRGCYC	1 cut(s)	233
Fsp4HI	GCNGC	2 cut(s)	439, 442
FspBI	CTAG	2 cut(s)	158, 347
GlaI	GCGC	2 cut(s)	156, 288
GluI	GCNGC	2 cut(s)	439, 442
GsuI	CTGGAG	1 cut(s)	71
HaeII	RGCGCY	2 cut(s)	158, 290
HaeIII	GGCC	1 cut(s)	516
HapII	CCGG	1 cut(s)	469
HhaI	GCGC	2 cut(s)	157, 289
Hin6I	GCGC	2 cut(s)	155, 287
HinP1I	GCGC	2 cut(s)	155, 287
HincII	GTYRAC	1 cut(s)	433
HindII	GTYRAC	1 cut(s)	433
HindIII	AAGCTT	1 cut(s)	141
HpaII	CCGG	1 cut(s)	469
Hpy166II	GTNNAC	3 cut(s)	320, 433, 496
Hpy188I	TCNGA	6 cut(s)	17, 133, 221, 235, 385, 480
Hpy188III	TCNNGA	1 cut(s)	37
Hpy8I	GTNNAC	3 cut(s)	320, 433, 496
Hpy99I	CGWCG	3 cut(s)	430, 437, 451
HpyAV	CCTTC	2 cut(s)	112, 418
HpyCH4III	ACNGT	1 cut(s)	430
HpyCH4IV	ACGT	1 cut(s)	498
HpyF10VI	GCNNNNNNNGC	1 cut(s)	161
HpyF3I	CTNAG	3 cut(s)	63, 165, 232
HpySE526I	ACGT	1 cut(s)	498
HspAI	GCGC	2 cut(s)	155, 287
Kzo9I	GATC	1 cut(s)	475
LmnI	GCTCC	1 cut(s)	169
LpnPI	CCDG	9 cut(s)	22, 35, 100, 114, 297, 316, 429, 476, 482
Lsp1109I	GCAGC	1 cut(s)	450
LweI	GCATC	2 cut(s)	19, 151
MaeI	CTAG	2 cut(s)	158, 347
MaeII	ACGT	1 cut(s)	498
MaeIII	GTNAC	1 cut(s)	103
MalI	GATC	1 cut(s)	477
MboI	GATC	1 cut(s)	475
MboII	GAAGA	3 cut(s)	20, 300, 366
MflI	RGATCY	1 cut(s)	475
MhlI	GDGCHC	1 cut(s)	233
MluCI	AATT	3 cut(s)	180, 243, 378
MmeI	TCCRAC	1 cut(s)	320
MnlI	CCTC	9 cut(s)	143, 147, 336, 354, 407, 410, 463, 466, 506
MspA1I	CMGCKG	1 cut(s)	441
MspI	CCGG	1 cut(s)	469
MspR9I	CCNGG	1 cut(s)	470
MwoI	GCNNNNNNNGC	1 cut(s)	161
NciI	CCSGG	1 cut(s)	470
NdeI	CATATG	1 cut(s)	194
NdeII	GATC	1 cut(s)	475
NlaIV	GGNNCC	2 cut(s)	135, 477
NmuCI	GTSAC	1 cut(s)	103
PceI	AGGCCT	1 cut(s)	516
PcsI	WCGNNNNNNNCGW	1 cut(s)	452
PflFI	GACNNNGTC	1 cut(s)	454
PkrI	GCNGC	2 cut(s)	440, 443
PmaCI	CACGTG	1 cut(s)	499
PmlI	CACGTG	1 cut(s)	499
Ppu21I	YACGTR	1 cut(s)	499
PshAI	GACNNNNGTC	1 cut(s)	361
Psp124BI	GAGCTC	1 cut(s)	233
PspCI	CACGTG	1 cut(s)	499
PspN4I	GGNNCC	2 cut(s)	135, 477
PspPI	GGNCC	1 cut(s)	493
PstNI	CAGNNNCTG	1 cut(s)	422
PsuI	RGATCY	1 cut(s)	475
PsyI	GACNNNGTC	1 cut(s)	454
SacI	GAGCTC	1 cut(s)	233
SalI	GTCGAC	1 cut(s)	431
SatI	GCNGC	2 cut(s)	439, 442
Sau3AI	GATC	1 cut(s)	475
Sau96I	GGNCC	1 cut(s)	493
ScrFI	CCNGG	1 cut(s)	470
SduI	GDGCHC	1 cut(s)	233
SfaNI	GCATC	2 cut(s)	19, 151
SfcI	CTRYAG	1 cut(s)	112
SinI	GGWCC	1 cut(s)	493
SmlI	CTYRAG	2 cut(s)	138, 173
SmoI	CTYRAG	2 cut(s)	138, 173
Sse9I	AATT	3 cut(s)	180, 243, 378
SseBI	AGGCCT	1 cut(s)	516
SsiI	CCGC	1 cut(s)	441
SspMI	CTAG	2 cut(s)	158, 347
SstI	GAGCTC	1 cut(s)	233
StuI	AGGCCT	1 cut(s)	516
StyD4I	CCNGG	1 cut(s)	468
TaaI	ACNGT	1 cut(s)	430
TaiI	ACGT	1 cut(s)	501
TaqI	TCGA	1 cut(s)	432
TasI	AATT	3 cut(s)	180, 243, 378
TauI	GCSGC	1 cut(s)	444
TscAI	CASTG	2 cut(s)	88, 274
TseFI	GTSAC	1 cut(s)	103
TseI	GCWGC	1 cut(s)	438
Tsp45I	GTSAC	1 cut(s)	103
TspDTI	ATGAA	2 cut(s)	71, 181
TspGWI	ACGGA	2 cut(s)	122, 373
TspRI	CASTG	2 cut(s)	88, 274
Tth111I	GACNNNGTC	1 cut(s)	454
VpaK11BI	GGWCC	1 cut(s)	493
XapI	RAATTY	3 cut(s)	180, 243, 378
XmiI	GTMKAC	1 cut(s)	432
XspI	CTAG	2 cut(s)	158, 347

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.