FvH4_2g17851

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000385
Physical Location & Seq
Forward (+)
15313508 .. 15317173
3666 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g17851.t1

Sequence Viewer

Length: 429 bp
ATGGACAAGGTACGAGCATTTCCCATTCCATTCTATAACATCTTTTGCATTGTCGCGGATGGAGAATTGCCTTGCGTGGTGCCCGTGGTGAGGCAAGCAAGGGAGAAGACAAAGGTTCTATCAGCCATGCAACTCGCCAAAGCTTGGAAAAAGGGCGAGCCTACTTTCCTAGCAACCTTCAAGATGGACGAAGAGGCTGAGGAAGGATGGGCTGTAAATAGGCTGGTTGGAGATGAAACTAAGGGACATTCTTTGAAGCGCTCTCAGGAGGAAATTTCGGCCACGCTATTGGCGGCTTGTAAGGACTATGGCAAGAGAGCTATTAAGCTTACTGAAAAAGCTTTGGGGCTCCTTAAACCTCTTATGAAGAAAAAGGGTAAGCGTATTGGAGCGAAGACCACAAAACCAAAGGTGTATGGTGAGGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Asp_protease_2 Chromo RVT_1 Retrotrans_gag gag-asp_proteas rve

Protein Analysis

143

Amino Acids

15.78

Weight (kDa)

9.66

Isoelectric Point (pI)

36.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000385)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g23713 FvH4_1g25744 FvH4_2g00261 FvH4_2g00262 FvH4_2g15681 FvH4_2g17851 FvH4_2g35550 FvH4_3g05280 FvH4_3g10531 FvH4_3g25910 FvH4_3g28953 FvH4_3g33371 FvH4_3g33536 FvH4_3g36090 FvH4_4g03471 FvH4_4g03480 FvH4_4g06701 FvH4_4g19351 FvH4_4g34281 FvH4_5g00040 FvH4_5g03811 FvH4_5g03812 FvH4_5g11822 FvH4_5g30921 FvH4_5g31701 FvH4_6g12161 FvH4_6g15222 FvH4_6g15223 FvH4_6g17701 FvH4_6g17710 FvH4_6g19301 FvH4_6g33011 FvH4_6g34501 FvH4_6g50161 FvH4_7g04111 FvH4_7g04120 FvH4_7g04121 FvH4_7g04122 FvH4_7g04123 FvH4_7g28231 FvH4_c7g00010
malus_domestica MD12G1084200.v1.1
prunus_persica Prupe.1G206200_v2.0.a1 Prupe.8G085600_v2.0.a1
pyrus_communis pycom01g11080 pycom02g20500 pycom09g18370 pycom12555g00210 pycom13g23120 pycom14g10590 pycom16g17620 pycom16g22750
rosa_chinensis RchiOBHm_Chr2g0137481 RchiOBHm_Chr6g0251961 RchiOBHm_Chr7g0185821
rosa_laevigata RLG00000005585 RLG00000010281 RLG00000010912 RLG00000030342 RLG00000034281
rosa_multiflora Rmu_sc0000096.1_g000010 Rmu_sc0002481.1_g000045 Rmu_sc0003598.1_g000009 Rmu_sc0003863.1_g000019 Rmu_sc0003973.1_g000002 Rmu_sc0004823.1_g000050 Rmu_sc0005621.1_g000007 Rmu_sc0006537.1_g000030 Rmu_sc0006608.1_g000014 Rmu_sc0008506.1_g000007 Rmu_sc0014428.1_g000001 Rmu_sc0035437.1_g000001 Rmu_ssc0000396.1_g000022
rosa_roxburghii Rroxscaffold_175G00432300 Rroxscaffold_17G00435390 Rroxscaffold_27G00446590 Rroxscaffold_29G00441820 Rroxscaffold_31G00438110 Rroxscaffold_32G00442750 Rroxscaffold_33G00439810 Rroxscaffold_37G00445160 Rroxscaffold_4G00306500 Rroxscaffold_4G00327700 Rroxscaffold_4G00332630 Rroxscaffold_52G00439360 Rroxscaffold_63G00444420 Rroxscaffold_76G00448580 Rroxscaffold_7G00156270
rosa_rugosa Rorug03G0295200
rosa_samantha Rh1BG433700 Rh1CG115400 Rh2AG676300 Rh2CG341800 Rh2DG381400 Rh3BG370100 Rh3BG370200 Rh4AG441600 Rh4BG076500 Rh4BG107400 Rh5BG005600 Rh6BG010100 Rh7BG000200
rosa_wichuraiana Rw0G003820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 79
AccB7I CCANNNNNTGG 1 cut(s) 144
AccII CGCG 1 cut(s) 56
AciI CCGC 2 cut(s) 56, 293
AcoI YGGCCR 1 cut(s) 279
AcsI RAATTY 1 cut(s) 273
AfaI GTAC 1 cut(s) 12
AfeI AGCGCT 1 cut(s) 260
AfiI CCNNNNNNNGG 2 cut(s) 90, 144
AgsI TTSAA 2 cut(s) 181, 256
AluBI AGCT 4 cut(s) 143, 320, 328, 341
AluI AGCT 4 cut(s) 143, 320, 328, 341
Aor51HI AGCGCT 1 cut(s) 260
AoxI GGCC 1 cut(s) 279
ApoI RAATTY 1 cut(s) 273
AspLEI GCGC 1 cut(s) 261
AsuHPI GGTGA 1 cut(s) 100
BaeGI GKGCMC 1 cut(s) 84
BanI GGYRCC 1 cut(s) 79
BanII GRGCYC 1 cut(s) 351
BbsI GAAGAC 2 cut(s) 113, 401
BbvCI CCTCAGC 1 cut(s) 198
BccI CCATC 3 cut(s) 53, 178, 201
BfaI CTAG 1 cut(s) 170
BfoI RGCGCY 1 cut(s) 262
BisI GCNGC 1 cut(s) 294
BlsI GCNGC 1 cut(s) 295
BmiI GGNNCC 2 cut(s) 81, 350
BpiI GAAGAC 2 cut(s) 113, 401
Bpu10I CCTNAGC 1 cut(s) 198
BsaJI CCNNGG 1 cut(s) 84
Bsc4I CCNNNNNNNGG 2 cut(s) 90, 144
BseDI CCNNGG 1 cut(s) 84
BseGI GGATG 2 cut(s) 64, 212
BseLI CCNNNNNNNGG 2 cut(s) 90, 144
BseMII CTCAG 2 cut(s) 189, 278
BseSI GKGCMC 1 cut(s) 84
Bsh1236I CGCG 1 cut(s) 56
BshFI GGCC 1 cut(s) 281
BshNI GGYRCC 1 cut(s) 79
BslFI GGGAC 1 cut(s) 258
BslI CCNNNNNNNGG 2 cut(s) 90, 144
BsmFI GGGAC 1 cut(s) 258
BsnI GGCC 1 cut(s) 281
Bsp1286I GDGCHC 2 cut(s) 84, 351
BspACI CCGC 2 cut(s) 56, 293
BspANI GGCC 1 cut(s) 281
BspCNI CTCAG 2 cut(s) 190, 277
BspFNI CGCG 1 cut(s) 56
BspLI GGNNCC 2 cut(s) 81, 350
BspT107I GGYRCC 1 cut(s) 79
BssECI CCNNGG 1 cut(s) 84
Bst6I CTCTTC 1 cut(s) 186
BstC8I GCNNGC 2 cut(s) 96, 158
BstDEI CTNAG 3 cut(s) 198, 240, 264
BstDSI CCRYGG 1 cut(s) 84
BstF5I GGATG 2 cut(s) 64, 212
BstFNI CGCG 1 cut(s) 56
BstH2I RGCGCY 1 cut(s) 262
BstHHI GCGC 1 cut(s) 261
BstSLI GKGCMC 1 cut(s) 84
BstUI CGCG 1 cut(s) 56
BstV2I GAAGAC 2 cut(s) 113, 401
BstXI CCANNNNNNTGG 1 cut(s) 289
BsuRI GGCC 1 cut(s) 281
BtgI CCRYGG 1 cut(s) 84
BtsCI GGATG 2 cut(s) 64, 212
Cac8I GCNNGC 2 cut(s) 96, 158
CfoI GCGC 1 cut(s) 261
Csp6I GTAC 1 cut(s) 11
CviAII CATG 1 cut(s) 127
CviQI GTAC 1 cut(s) 11
DdeI CTNAG 3 cut(s) 198, 240, 264
EaeI YGGCCR 1 cut(s) 279
Eam1104I CTCTTC 1 cut(s) 186
EarI CTCTTC 1 cut(s) 186
Eco24I GRGCYC 1 cut(s) 351
Eco47III AGCGCT 1 cut(s) 260
EcoT38I GRGCYC 1 cut(s) 351
FaeI CATG 1 cut(s) 130
FaiI YATR 5 cut(s) 36, 128, 309, 365, 417
FaqI GGGAC 1 cut(s) 258
FatI CATG 1 cut(s) 126
Fnu4HI GCNGC 1 cut(s) 294
FokI GGATG 2 cut(s) 71, 219
FriOI GRGCYC 1 cut(s) 351
Fsp4HI GCNGC 1 cut(s) 294
FspBI CTAG 1 cut(s) 170
GlaI GCGC 1 cut(s) 260
GluI GCNGC 1 cut(s) 294
HaeII RGCGCY 1 cut(s) 262
HaeIII GGCC 1 cut(s) 281
HhaI GCGC 1 cut(s) 261
Hin1II CATG 1 cut(s) 130
Hin6I GCGC 1 cut(s) 259
HinP1I GCGC 1 cut(s) 259
HindIII AAGCTT 3 cut(s) 141, 326, 339
HphI GGTGA 1 cut(s) 100
Hpy188III TCNNGA 2 cut(s) 181, 266
HpyAV CCTTC 2 cut(s) 187, 197
HpyCH4V TGCA 2 cut(s) 48, 130
HpyF3I CTNAG 3 cut(s) 198, 240, 264
Hsp92II CATG 1 cut(s) 130
HspAI GCGC 1 cut(s) 259
LmnI GCTCC 2 cut(s) 354, 389
LpnPI CCDG 2 cut(s) 209, 251
MaeI CTAG 1 cut(s) 170
MboII GAAGA 4 cut(s) 118, 203, 379, 406
MhlI GDGCHC 2 cut(s) 84, 351
MluCI AATT 2 cut(s) 65, 273
MmeI TCCRAC 1 cut(s) 208
MnlI CCTC 6 cut(s) 84, 187, 193, 262, 369, 415
MseI TTAA 2 cut(s) 324, 354
MvnI CGCG 1 cut(s) 56
NlaIII CATG 1 cut(s) 130
NlaIV GGNNCC 2 cut(s) 81, 350
PflMI CCANNNNNTGG 1 cut(s) 144
PkrI GCNGC 1 cut(s) 295
PspN4I GGNNCC 2 cut(s) 81, 350
RsaI GTAC 1 cut(s) 12
RsaNI GTAC 1 cut(s) 11
SaqAI TTAA 2 cut(s) 324, 354
SatI GCNGC 1 cut(s) 294
SduI GDGCHC 2 cut(s) 84, 351
SetI ASST 9 cut(s) 12, 117, 145, 179, 322, 330, 343, 361, 414
Sse9I AATT 2 cut(s) 65, 273
SsiI CCGC 2 cut(s) 56, 293
SspMI CTAG 1 cut(s) 170
TasI AATT 2 cut(s) 65, 273
TauI GCSGC 1 cut(s) 296
Tru1I TTAA 2 cut(s) 324, 354
Tru9I TTAA 2 cut(s) 324, 354
TspDTI ATGAA 2 cut(s) 249, 380
Van91I CCANNNNNTGG 1 cut(s) 144
XapI RAATTY 1 cut(s) 273
XspI CTAG 1 cut(s) 170
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.