Rh4BG107400

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0000385
Physical Location & Seq
Reverse (-)
18313286 .. 18319113
5828 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG107400.1

Sequence Viewer

Length: 1911 bp
ATGTCGGGACTTTCTACGAAGGAGCGACTCGACAGACTCGAAGGAATTGTTGGTGACCCAAGGATAGATGGGGCAGAGGCCTCATCATTATCTATCCAATGTTCAAGAATGGAGGAAACCATGAAGGCGATGGATGCGGCATACAAGGGGTACGTTGCAGAAGTCAATGTTCGGCTAACTTCCATATTGGAAGAGTTAGCTAGCCTGAAGGAGGTGGTGATGGCAAATGACGACGAGACAAAGTCCCAGGTCCTAGGCTTGGAGGAGGAGATCCAGGTTCTGAGGAGGATGAGGAGCAATGAGTGCTCGACTGTCTCTAAGGTCAAAGTGCCAGAACCAAAGGCATTTCATGGTGTTCGGAATGCAAAGGAGTTGGAGAACTTTCTATGGGACATGGAGCAATATTTCGGTGCTGCCCATATTCCAACTCAGGAGCAAGTGTCCATTACGAGCATGTACCTAGCAGGAGACGCCAAACTGTGGTGGCGGACTCGGGTGCAGGACGAGGGCAGGCCAAGGATCGACGAGTGGGAGTCCATGAAGAAGGAATTGAAGGTTCAGTTCCTTCCTTGCAATGCATCGTGGCTTGCAAGGGAATCTATTCGGAAGCTGAGACACACGAACTCGGTGAGGGAGTTTGTGAAACAGTTCAGTTCCTTGATGTTGGATGTCTCCAACATGTCGGAGGAAGATAAGCTGTTCAACTTCATGTCGGGATTGCAGCCTTGGGCGCAAAAGGAGTTGCGTAGGCAAGGGGTAAGGGACTTACCAAGTGCAATGACAGCTGCTGACGGCTTGGTGGATTTTGATCTAGATCAGTCTCCGTCAAACATAGGCAAGAGTGCCTCTTCCAAGAGTGGAAAGAAGTTTGAGAGGAAGGAGAAAGAGGGTGGAAAGGGTTCGAGTTCGAGGAATCAACCCCAAGACAGAAACAAGTGGAGTTCTGGTTTCTTCATTTGCAAGGGTCCTCATCTAGCACGAGAGTGTCCTAAGAAGGAGCAGCTGAGTGCATTGATTGCCAATGATTCGAGTGATGATGACTCAGGAGATGCTCATCTTGGAAGCATGAAATTGTTGGGTGCCATGACGATGGTCAAGGACAGTTCCAAGGAGGAATTGATGTTCTTGCCGATCAAGGTTGATGGCAACGATGTGCTGGCGATGTTGGACACAGGTGCAACAAGCAGCTTTGTCGCTGTGGGAGTGGCAAAGAGATTGGGTTTAAAGTTGGTTCATAATTCGGGCAAGCTGAAAGCTGTGAACTCGGAGGCCAAACCAGTCCATGGAAGCGCAAGGGTGTGCTTGAAGGCTGGAGATTGGGAGGGCGAGTGCTGTTTGTCGGCTGTACCACTGGATGATTATGATCTAGTCCTTGGTATCGACTTCTTTAAAAAGGCGAAAGTAGGGGTGGTGCCTTACTTGGGAGGGATTCTCATTATGGATGGGAAGTCCCCATGCTTTGTGAAAGCAAGATTTGCGAGTCAACTACTGGACCGCAAAGGAAATCAACTTGAGGGTGATGCCCGTCAGTCAATGGCAGGAGTGAAGATTGGGGAAAGAAGTCTGGTTGCAGCCTTGATAGAGATCAAGCCGGATAAAATGTTCAAAGTACCCAAAGATGATAATGTGGCGCTTCCTCCTAGTCGAATGAAAGGCCACATGATGGAGCTGGAAGCATGTGCAGGACCTCATGCACAAGCACTTCATCCGGTACCAACAGAGATAGCGAAGCAGCGGAGACACTCGGGTGTGTTGCTAGGGGCAGGCTGTAGGAAGCCTTCCAAAGCTCGTTATGGTGCCAAAGGGTTGCTGTGGAAGCAACATGAGTTGAGTGATCATGGCGCAAGGCCAGCGTCGAAGGTGATACTCAGAGGGAATGTTCCCAAAAGATGGGGACCAAATGCTCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

636

Amino Acids

70.16

Weight (kDa)

8.93

Isoelectric Point (pI)

42.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ty3_capsid PF19259 105 - 263 2.5e-09 Ty3 transposon capsid-like protein
Retrotrans_gag PF03732 149 - 242 1.9e-17 Retrotransposon gag protein
gag-asp_proteas PF13975 377 - 465 6.5e-08 gag-polyprotein putative aspartyl protease
Asp_protease_2 PF13650 377 - 462 4.5e-07 Aspartyl protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000385)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g23713 FvH4_1g25744 FvH4_2g00261 FvH4_2g00262 FvH4_2g15681 FvH4_2g17851 FvH4_2g35550 FvH4_3g05280 FvH4_3g10531 FvH4_3g25910 FvH4_3g28953 FvH4_3g33371 FvH4_3g33536 FvH4_3g36090 FvH4_4g03471 FvH4_4g03480 FvH4_4g06701 FvH4_4g19351 FvH4_4g34281 FvH4_5g00040 FvH4_5g03811 FvH4_5g03812 FvH4_5g11822 FvH4_5g30921 FvH4_5g31701 FvH4_6g12161 FvH4_6g15222 FvH4_6g15223 FvH4_6g17701 FvH4_6g17710 FvH4_6g19301 FvH4_6g33011 FvH4_6g34501 FvH4_6g50161 FvH4_7g04111 FvH4_7g04120 FvH4_7g04121 FvH4_7g04122 FvH4_7g04123 FvH4_7g28231 FvH4_c7g00010
malus_domestica MD12G1084200.v1.1
prunus_persica Prupe.1G206200_v2.0.a1 Prupe.8G085600_v2.0.a1
pyrus_communis pycom01g11080 pycom02g20500 pycom09g18370 pycom12555g00210 pycom13g23120 pycom14g10590 pycom16g17620 pycom16g22750
rosa_chinensis RchiOBHm_Chr2g0137481 RchiOBHm_Chr6g0251961 RchiOBHm_Chr7g0185821
rosa_laevigata RLG00000005585 RLG00000010281 RLG00000010912 RLG00000030342 RLG00000034281
rosa_multiflora Rmu_sc0000096.1_g000010 Rmu_sc0002481.1_g000045 Rmu_sc0003598.1_g000009 Rmu_sc0003863.1_g000019 Rmu_sc0003973.1_g000002 Rmu_sc0004823.1_g000050 Rmu_sc0005621.1_g000007 Rmu_sc0006537.1_g000030 Rmu_sc0006608.1_g000014 Rmu_sc0008506.1_g000007 Rmu_sc0014428.1_g000001 Rmu_sc0035437.1_g000001 Rmu_ssc0000396.1_g000022
rosa_roxburghii Rroxscaffold_175G00432300 Rroxscaffold_17G00435390 Rroxscaffold_27G00446590 Rroxscaffold_29G00441820 Rroxscaffold_31G00438110 Rroxscaffold_32G00442750 Rroxscaffold_33G00439810 Rroxscaffold_37G00445160 Rroxscaffold_4G00306500 Rroxscaffold_4G00327700 Rroxscaffold_4G00332630 Rroxscaffold_52G00439360 Rroxscaffold_63G00444420 Rroxscaffold_76G00448580 Rroxscaffold_7G00156270
rosa_rugosa Rorug03G0295200
rosa_samantha Rh1BG433700 Rh1CG115400 Rh2AG676300 Rh2CG341800 Rh2DG381400 Rh3BG370100 Rh3BG370200 Rh4AG441600 Rh4BG076500 Rh4BG107400 Rh5BG005600 Rh6BG010100 Rh7BG000200
rosa_wichuraiana Rw0G003820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1711
AccB1I GGYRCC 4 cut(s) 1079, 1411, 1711, 1796
AccB7I CCANNNNNTGG 4 cut(s) 480, 1283, 1663, 1890
AciI CCGC 4 cut(s) 137, 487, 1495, 1735
AclWI GGATC 2 cut(s) 265, 527
AcuI CTGAAG 1 cut(s) 227
AcyI GRCGYC 1 cut(s) 471
AfaI GTAC 5 cut(s) 152, 458, 1347, 1611, 1713
AfiI CCNNNNNNNGG 7 cut(s) 211, 259, 480, 1283, 1421, 1663, 1890
AflIII ACRYGT 1 cut(s) 678
AgsI TTSAA 5 cut(s) 105, 553, 703, 1306, 1606
AjnI CCWGG 2 cut(s) 246, 273
AjuI GAANNNNNNNTTGG 2 cut(s) 33, 65
AleI CACNNNNGTG 2 cut(s) 982, 1746
AloI GAACNNNNNNTCC 4 cut(s) 1106, 1138, 1586, 1618
Alw21I GWGCWC 1 cut(s) 308
Alw26I GTCTC 7 cut(s) 230, 319, 462, 607, 676, 825, 1732
AlwI GGATC 2 cut(s) 265, 527
AlwNI CAGNNNCTG 2 cut(s) 280, 788
Ama87I CYCGRG 2 cut(s) 492, 1744
AoxI GGCC 5 cut(s) 78, 512, 1269, 1654, 1847
ApeKI GCWGC 7 cut(s) 413, 721, 785, 1000, 1185, 1571, 1732
Asp700I GAANNNNTTC 3 cut(s) 600, 647, 898
Asp718I GGTACC 1 cut(s) 1711
AspA2I CCTAGG 1 cut(s) 253
AspLEI GCGC 4 cut(s) 733, 1292, 1633, 1844
AspS9I GGNCC 5 cut(s) 250, 965, 1492, 1685, 1895
AsuHPI GGTGA 5 cut(s) 65, 229, 640, 1529, 1873
AsuNHI GCTAGC 1 cut(s) 200
AvaI CYCGRG 2 cut(s) 492, 1744
AvaII GGWCC 5 cut(s) 250, 965, 1492, 1685, 1895
AvrII CCTAGG 1 cut(s) 253
BanI GGYRCC 4 cut(s) 1079, 1411, 1711, 1796
BarI GAAGNNNNNNTAC 2 cut(s) 1762, 1794
BauI CACGAG 1 cut(s) 978
Bbv12I GWGCWC 1 cut(s) 308
BbvI GCAGC 7 cut(s) 400, 733, 772, 1012, 1197, 1583, 1744
BccI CCATC 8 cut(s) 62, 124, 214, 1084, 1136, 1436, 1657, 1884
BceAI ACGGC 1 cut(s) 808
BcgI CGANNNNNNTGC 2 cut(s) 1174, 1208
BciT130I CCWGG 2 cut(s) 248, 275
BclI TGATCA 1 cut(s) 1834
BcoDI GTCTC 7 cut(s) 230, 319, 462, 607, 676, 825, 1732
BfaI CTAG 8 cut(s) 201, 254, 461, 812, 974, 1367, 1641, 1757
BfmI CTRYAG 1 cut(s) 1768
BfoI RGCGCY 1 cut(s) 1634
BisI GCNGC 8 cut(s) 138, 414, 722, 786, 1001, 1186, 1572, 1733
BlnI CCTAGG 1 cut(s) 253
BlsI GCNGC 8 cut(s) 139, 415, 723, 787, 1002, 1187, 1573, 1734
Bme1390I CCNGG 2 cut(s) 248, 275
Bme18I GGWCC 5 cut(s) 250, 965, 1492, 1685, 1895
BmeT110I CYCGRG 2 cut(s) 492, 1744
BmgT120I GGNCC 5 cut(s) 250, 965, 1492, 1685, 1895
BmiI GGNNCC 6 cut(s) 966, 1081, 1413, 1713, 1798, 1896
BmrFI CCNGG 2 cut(s) 248, 275
BmsI GCATC 4 cut(s) 124, 587, 1039, 1510
BmtI GCTAGC 1 cut(s) 204
BoxI GACNNNNGTC 1 cut(s) 1091
BplI GAGNNNNNCTC 2 cut(s) 1416, 1448
BpmI CTGGAG 1 cut(s) 1332
BpuEI CTTGAG 1 cut(s) 1532
BsaBI GATNNNNATC 5 cut(s) 807, 813, 1053, 1362, 1583
BsaHI GRCGYC 1 cut(s) 471
BsaJI CCNNGG 8 cut(s) 59, 246, 253, 515, 725, 1107, 1282, 1372
BsaWI WCCGGW 1 cut(s) 1708
BsaXI ACNNNNNCTCC 6 cut(s) 425, 455, 931, 961, 1313, 1343
Bsc4I CCNNNNNNNGG 7 cut(s) 211, 259, 480, 1283, 1421, 1663, 1890
Bse1I ACTGG 3 cut(s) 1277, 1356, 1494
Bse3DI GCAATG 3 cut(s) 304, 580, 783
Bse8I GATNNNNATC 5 cut(s) 807, 813, 1053, 1362, 1583
BseBI CCWGG 2 cut(s) 248, 275
BseDI CCNNGG 8 cut(s) 59, 246, 253, 515, 725, 1107, 1282, 1372
BseGI GGATG 6 cut(s) 139, 294, 673, 1360, 1447, 1705
BseJI GATNNNNATC 5 cut(s) 807, 813, 1053, 1362, 1583
BseLI CCNNNNNNNGG 7 cut(s) 211, 259, 480, 1283, 1421, 1663, 1890
BseMI GCAATG 3 cut(s) 304, 580, 783
BseMII CTCAG 6 cut(s) 272, 443, 602, 995, 1056, 1882
BseNI ACTGG 3 cut(s) 1277, 1356, 1494
BseRI GAGGAG 4 cut(s) 278, 281, 298, 307
BseXI GCAGC 7 cut(s) 400, 733, 772, 1012, 1197, 1583, 1744
BsgI GTGCAG 2 cut(s) 518, 1701
BshFI GGCC 5 cut(s) 80, 514, 1271, 1656, 1849
BshNI GGYRCC 4 cut(s) 1079, 1411, 1711, 1796
BsiHKAI GWGCWC 1 cut(s) 308
BsiHKCI CYCGRG 2 cut(s) 492, 1744
BsiSI CCGG 2 cut(s) 1592, 1709
BslFI GGGAC 5 cut(s) 21, 229, 404, 776, 1435
BslI CCNNNNNNNGG 7 cut(s) 211, 259, 480, 1283, 1421, 1663, 1890
BsmAI GTCTC 7 cut(s) 230, 319, 462, 607, 676, 825, 1732
BsmBI CGTCTC 1 cut(s) 462
BsmFI GGGAC 5 cut(s) 21, 229, 404, 776, 1435
BsmI GAATGC 1 cut(s) 367
BsnI GGCC 5 cut(s) 80, 514, 1271, 1656, 1849
BsoBI CYCGRG 2 cut(s) 492, 1744
Bsp1286I GDGCHC 1 cut(s) 308
Bsp143I GATC 8 cut(s) 270, 519, 808, 814, 1131, 1363, 1584, 1834
Bsp19I CCATGG 1 cut(s) 1282
BspACI CCGC 4 cut(s) 137, 487, 1495, 1735
BspANI GGCC 5 cut(s) 80, 514, 1271, 1656, 1849
BspCNI CTCAG 6 cut(s) 273, 442, 603, 996, 1055, 1881
BspLI GGNNCC 6 cut(s) 966, 1081, 1413, 1713, 1798, 1896
BspOI GCTAGC 1 cut(s) 204
BspPI GGATC 2 cut(s) 265, 527
BspT107I GGYRCC 4 cut(s) 1079, 1411, 1711, 1796
BsrDI GCAATG 3 cut(s) 304, 580, 783
BsrI ACTGG 3 cut(s) 1277, 1356, 1494
BssECI CCNNGG 8 cut(s) 59, 246, 253, 515, 725, 1107, 1282, 1372
BssMI GATC 8 cut(s) 270, 519, 808, 814, 1131, 1363, 1584, 1834
BssNI GRCGYC 1 cut(s) 471
BssSI CACGAG 1 cut(s) 978
BssT1I CCWWGG 7 cut(s) 59, 253, 515, 725, 1107, 1282, 1372
Bst2BI CACGAG 1 cut(s) 978
Bst2UI CCWGG 2 cut(s) 248, 275
Bst4CI ACNGT 4 cut(s) 313, 480, 648, 1103
Bst6I CTCTTC 2 cut(s) 186, 853
BstACI GRCGYC 1 cut(s) 471
BstAPI GCANNNNNTGC 3 cut(s) 303, 1016, 1475
BstC8I GCNNGC 7 cut(s) 202, 512, 588, 1158, 1247, 1765, 1851
BstDEI CTNAG 8 cut(s) 281, 318, 429, 611, 990, 1004, 1042, 1868
BstDSI CCRYGG 1 cut(s) 1282
BstEII GGTNACC 1 cut(s) 53
BstENI CCTNNNNNAGG 1 cut(s) 209
BstF5I GGATG 6 cut(s) 139, 294, 673, 1360, 1447, 1705
BstH2I RGCGCY 1 cut(s) 1634
BstHHI GCGC 4 cut(s) 733, 1292, 1633, 1844
BstKTI GATC 8 cut(s) 273, 522, 811, 817, 1134, 1366, 1587, 1837
BstMAI GTCTC 7 cut(s) 230, 319, 462, 607, 676, 825, 1732
BstMBI GATC 8 cut(s) 270, 519, 808, 814, 1131, 1363, 1584, 1834
BstMWI GCNNNNNNNGC 9 cut(s) 134, 303, 470, 730, 782, 1016, 1475, 1816, 1850
BstNI CCWGG 2 cut(s) 248, 275
BstNSI RCATGY 3 cut(s) 457, 682, 1680
BstPAI GACNNNNGTC 1 cut(s) 1091
BstPI GGTNACC 1 cut(s) 53
BstSCI CCNGG 2 cut(s) 246, 273
BstSFI CTRYAG 1 cut(s) 1768
BstV1I GCAGC 7 cut(s) 400, 733, 772, 1012, 1197, 1583, 1744
BstX2I RGATCY 1 cut(s) 270
BstXI CCANNNNNNTGG 1 cut(s) 1090
BstYI RGATCY 1 cut(s) 270
BsuRI GGCC 5 cut(s) 80, 514, 1271, 1656, 1849
BtgI CCRYGG 1 cut(s) 1282
BtgZI GCGATG 2 cut(s) 143, 1175
BtsCI GGATG 6 cut(s) 139, 294, 673, 1360, 1447, 1705
BtsIMutI CAGTG 1 cut(s) 1349
Cac8I GCNNGC 7 cut(s) 202, 512, 588, 1158, 1247, 1765, 1851
CaiI CAGNNNCTG 2 cut(s) 280, 788
CfoI GCGC 4 cut(s) 733, 1292, 1633, 1844
Cfr13I GGNCC 5 cut(s) 250, 965, 1492, 1685, 1895
CseI GACGC 2 cut(s) 479, 1842
Csp6I GTAC 5 cut(s) 151, 457, 1346, 1610, 1712
CviQI GTAC 5 cut(s) 151, 457, 1346, 1610, 1712
DdeI CTNAG 8 cut(s) 281, 318, 429, 611, 990, 1004, 1042, 1868
DpnI GATC 8 cut(s) 272, 521, 810, 816, 1133, 1365, 1586, 1836
DpnII GATC 8 cut(s) 270, 519, 808, 814, 1131, 1363, 1584, 1834
DraI TTTAAA 2 cut(s) 1224, 1390
Eam1104I CTCTTC 2 cut(s) 186, 853
EarI CTCTTC 2 cut(s) 186, 853
EciI GGCGGA 1 cut(s) 502
Eco130I CCWWGG 7 cut(s) 59, 253, 515, 725, 1107, 1282, 1372
Eco147I AGGCCT 1 cut(s) 80
Eco47I GGWCC 5 cut(s) 250, 965, 1492, 1685, 1895
Eco57I CTGAAG 1 cut(s) 227
Eco88I CYCGRG 2 cut(s) 492, 1744
Eco91I GGTNACC 1 cut(s) 53
EcoNI CCTNNNNNAGG 1 cut(s) 209
EcoO109I RGGNCCY 3 cut(s) 250, 965, 1685
EcoO65I GGTNACC 1 cut(s) 53
EcoRII CCWGG 2 cut(s) 246, 273
EcoT14I CCWWGG 7 cut(s) 59, 253, 515, 725, 1107, 1282, 1372
EcoT22I ATGCAT 1 cut(s) 580
ErhI CCWWGG 7 cut(s) 59, 253, 515, 725, 1107, 1282, 1372
Esp3I CGTCTC 1 cut(s) 462
FaqI GGGAC 5 cut(s) 21, 229, 404, 776, 1435
FbaI TGATCA 1 cut(s) 1834
Fnu4HI GCNGC 8 cut(s) 138, 414, 722, 786, 1001, 1186, 1572, 1733
FokI GGATG 6 cut(s) 146, 301, 680, 1367, 1454, 1692
Fsp4HI GCNGC 8 cut(s) 138, 414, 722, 786, 1001, 1186, 1572, 1733
FspBI CTAG 8 cut(s) 201, 254, 461, 812, 974, 1367, 1641, 1757
GlaI GCGC 4 cut(s) 732, 1291, 1632, 1843
GluI GCNGC 8 cut(s) 138, 414, 722, 786, 1001, 1186, 1572, 1733
GsuI CTGGAG 1 cut(s) 1332
HaeII RGCGCY 1 cut(s) 1634
HaeIII GGCC 5 cut(s) 80, 514, 1271, 1656, 1849
HapII CCGG 2 cut(s) 1592, 1709
HgaI GACGC 2 cut(s) 479, 1842
HhaI GCGC 4 cut(s) 733, 1292, 1633, 1844
Hin1I GRCGYC 1 cut(s) 471
Hin6I GCGC 4 cut(s) 731, 1290, 1631, 1842
HinP1I GCGC 4 cut(s) 731, 1290, 1631, 1842
HincII GTYRAC 1 cut(s) 1484
HindII GTYRAC 1 cut(s) 1484
HpaII CCGG 2 cut(s) 1592, 1709
HphI GGTGA 5 cut(s) 65, 229, 640, 1529, 1873
Hpy166II GTNNAC 2 cut(s) 1261, 1484
Hpy188I TCNGA 6 cut(s) 282, 360, 606, 685, 1267, 1871
Hpy188III TCNNGA 6 cut(s) 6, 105, 431, 714, 812, 1044
Hpy8I GTNNAC 2 cut(s) 1261, 1484
Hpy99I CGWCG 3 cut(s) 236, 527, 1858
HpyCH4III ACNGT 4 cut(s) 313, 480, 648, 1103
HpyCH4IV ACGT 1 cut(s) 153
HpyF10VI GCNNNNNNNGC 9 cut(s) 134, 303, 470, 730, 782, 1016, 1475, 1816, 1850
HpyF3I CTNAG 8 cut(s) 281, 318, 429, 611, 990, 1004, 1042, 1868
HpySE526I ACGT 1 cut(s) 153
Hsp92I GRCGYC 1 cut(s) 471
HspAI GCGC 4 cut(s) 731, 1290, 1631, 1842
KpnI GGTACC 1 cut(s) 1715
Ksp22I TGATCA 1 cut(s) 1834
Kzo9I GATC 8 cut(s) 270, 519, 808, 814, 1131, 1363, 1584, 1834
LmnI GCTCC 7 cut(s) 22, 294, 397, 433, 997, 1666, 1909
Lsp1109I GCAGC 7 cut(s) 400, 733, 772, 1012, 1197, 1583, 1744
LweI GCATC 4 cut(s) 124, 587, 1039, 1510
MaeI CTAG 8 cut(s) 201, 254, 461, 812, 974, 1367, 1641, 1757
MaeII ACGT 1 cut(s) 153
MaeIII GTNAC 1 cut(s) 53
MalI GATC 8 cut(s) 272, 521, 810, 816, 1133, 1365, 1586, 1836
MboI GATC 8 cut(s) 270, 519, 808, 814, 1131, 1363, 1584, 1834
MboII GAAGA 6 cut(s) 203, 553, 701, 840, 943, 1558
MflI RGATCY 1 cut(s) 270
MhlI GDGCHC 1 cut(s) 308
MluCI AATT 5 cut(s) 45, 548, 1070, 1115, 1237
MlyI GAGTC 6 cut(s) 21, 30, 484, 542, 1034, 1489
MmeI TCCRAC 6 cut(s) 354, 449, 645, 663, 699, 1146
Mph1103I ATGCAT 1 cut(s) 580
MroXI GAANNNNTTC 3 cut(s) 600, 647, 898
MseI TTAA 2 cut(s) 1223, 1389
MslI CAYNNNNRTG 3 cut(s) 982, 1088, 1746
MspA1I CMGCKG 3 cut(s) 785, 1003, 1735
MspI CCGG 2 cut(s) 1592, 1709
MspR9I CCNGG 2 cut(s) 248, 275
Mva1269I GAATGC 1 cut(s) 367
MvaI CCWGG 2 cut(s) 248, 275
MwoI GCNNNNNNNGC 9 cut(s) 134, 303, 470, 730, 782, 1016, 1475, 1816, 1850
NcoI CCATGG 1 cut(s) 1282
NdeII GATC 8 cut(s) 270, 519, 808, 814, 1131, 1363, 1584, 1834
NheI GCTAGC 1 cut(s) 200
NlaIV GGNNCC 6 cut(s) 966, 1081, 1413, 1713, 1798, 1896
NmuCI GTSAC 1 cut(s) 53
NsiI ATGCAT 1 cut(s) 580
NspI RCATGY 3 cut(s) 457, 682, 1680
OliI CACNNNNGTG 2 cut(s) 982, 1746
PceI AGGCCT 1 cut(s) 80
PciI ACATGT 1 cut(s) 678
PcsI WCGNNNNNNNCGW 1 cut(s) 36
PctI GAATGC 1 cut(s) 367
PdmI GAANNNNTTC 3 cut(s) 600, 647, 898
PfeI GAWTC 4 cut(s) 596, 913, 1025, 1429
PflFI GACNNNGTC 1 cut(s) 241
PflMI CCANNNNNTGG 4 cut(s) 480, 1283, 1663, 1890
PkrI GCNGC 8 cut(s) 139, 415, 723, 787, 1002, 1187, 1573, 1734
PleI GAGTC 6 cut(s) 21, 30, 484, 541, 1034, 1488
PpsI GAGTC 6 cut(s) 21, 30, 484, 541, 1034, 1488
PpuMI RGGWCCY 3 cut(s) 250, 965, 1685
PscI ACATGT 1 cut(s) 678
PshAI GACNNNNGTC 1 cut(s) 1091
Psp5II RGGWCCY 3 cut(s) 250, 965, 1685
Psp6I CCWGG 2 cut(s) 246, 273
PspEI GGTNACC 1 cut(s) 53
PspGI CCWGG 2 cut(s) 246, 273
PspN4I GGNNCC 6 cut(s) 966, 1081, 1413, 1713, 1798, 1896
PspPI GGNCC 5 cut(s) 250, 965, 1492, 1685, 1895
PspPPI RGGWCCY 3 cut(s) 250, 965, 1685
PstNI CAGNNNCTG 2 cut(s) 280, 788
PsuI RGATCY 1 cut(s) 270
PsyI GACNNNGTC 1 cut(s) 241
PvuII CAGCTG 2 cut(s) 785, 1003
RsaI GTAC 5 cut(s) 152, 458, 1347, 1611, 1713
RsaNI GTAC 5 cut(s) 151, 457, 1346, 1610, 1712
RseI CAYNNNNRTG 3 cut(s) 982, 1088, 1746
SaqAI TTAA 2 cut(s) 1223, 1389
SatI GCNGC 8 cut(s) 138, 414, 722, 786, 1001, 1186, 1572, 1733
Sau3AI GATC 8 cut(s) 270, 519, 808, 814, 1131, 1363, 1584, 1834
Sau96I GGNCC 5 cut(s) 250, 965, 1492, 1685, 1895
SchI GAGTC 6 cut(s) 21, 30, 484, 542, 1034, 1489
ScrFI CCNGG 2 cut(s) 248, 275
SduI GDGCHC 1 cut(s) 308
SfaNI GCATC 4 cut(s) 124, 587, 1039, 1510
SfcI CTRYAG 1 cut(s) 1768
SinI GGWCC 5 cut(s) 250, 965, 1492, 1685, 1895
SmiMI CAYNNNNRTG 3 cut(s) 982, 1088, 1746
SmlI CTYRAG 1 cut(s) 1511
SmoI CTYRAG 1 cut(s) 1511
Sse9I AATT 5 cut(s) 45, 548, 1070, 1115, 1237
SseBI AGGCCT 1 cut(s) 80
SsiI CCGC 4 cut(s) 137, 487, 1495, 1735
SspI AATATT 1 cut(s) 404
SspMI CTAG 8 cut(s) 201, 254, 461, 812, 974, 1367, 1641, 1757
StuI AGGCCT 1 cut(s) 80
StyD4I CCNGG 2 cut(s) 246, 273
StyI CCWWGG 7 cut(s) 59, 253, 515, 725, 1107, 1282, 1372
TaaI ACNGT 4 cut(s) 313, 480, 648, 1103
TaiI ACGT 1 cut(s) 156
TasI AATT 5 cut(s) 45, 548, 1070, 1115, 1237
TauI GCSGC 1 cut(s) 140
TfiI GAWTC 4 cut(s) 596, 913, 1025, 1429
Tru1I TTAA 2 cut(s) 1223, 1389
Tru9I TTAA 2 cut(s) 1223, 1389
TscAI CASTG 1 cut(s) 1356
TseFI GTSAC 1 cut(s) 53
TseI GCWGC 7 cut(s) 413, 721, 785, 1000, 1185, 1571, 1732
Tsp45I GTSAC 1 cut(s) 53
TspDTI ATGAA 9 cut(s) 137, 338, 554, 697, 943, 1082, 1223, 1664, 1694
TspGWI ACGGA 1 cut(s) 813
TspRI CASTG 1 cut(s) 1356
Tth111I GACNNNGTC 1 cut(s) 241
Van91I CCANNNNNTGG 4 cut(s) 480, 1283, 1663, 1890
VpaK11BI GGWCC 5 cut(s) 250, 965, 1492, 1685, 1895
XagI CCTNNNNNAGG 1 cut(s) 209
XbaI TCTAGA 1 cut(s) 811
XceI RCATGY 3 cut(s) 457, 682, 1680
XcmI CCANNNNNNNNNTGG 1 cut(s) 127
XmaJI CCTAGG 1 cut(s) 253
XmnI GAANNNNTTC 3 cut(s) 600, 647, 898
XspI CTAG 8 cut(s) 201, 254, 461, 812, 974, 1367, 1641, 1757
Zsp2I ATGCAT 1 cut(s) 580
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.