RLG00000010281

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0000385
Physical Location & Seq
Reverse (-)
9847 .. 10655
809 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000010281

Sequence Viewer

Length: 726 bp
ATGGTGTTGCAAAATGTTGCAACTGTTGATCCCATAGGTTGGGGAAACACCGAGCATGAGATGGAAGCGCTAGAGGACGACCTAAGTGCTTTGGAAGTCTTCGTGGATGTATATATTCACGCAGCCAGTGGCCAAGTAACCTTGCTAGCCACGTTGGTTGATGCGAGGACGTTCATCGAGGACGAGGAGATGCACCTCTATCTATGGAGTCATGGGCACTCTAAGGAGGAGATAGAGATCAGTGCTGTCCACATAGTAGTGAACATAGAGCAAGGCAAGATGCATGTTGACTACCTTACTACCTTGCAAACCTACGGCTTTGAGTGGAAGCTCAAGTCAGGACAGCACGAGGCGGTGAACGAGGCGGATCCACTACAAGAGGTCATCATCATAGACGACGATCTTAGTGACATGGGCGAACCTGTGCCTATGGCTGAGGAAGATGTCACCACTAACAACAACAAAGGCCAAGGCGGAGGTAGGGCAGATCTAGGAGAGATTGAAGTAGAGATGCTTGGATCCCGGGTGATTAAATTGGATGAAGGTGGGGAGGTGGCCATTGAAGGCCACGCATTGAAAAACTCGCTGGAGAAAGCGAGGCTCAACCTTGAGGAGAATAAGGTCGAGGTATTGGTGAAGACAAAGGCAGGAGGCCTTAGTGATTCTGCAACTAAGGTGGAGACAGCCAACGAGGGGAAATCGGGAGATGCTAAGAAGCCTGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

242

Amino Acids

26.3

Weight (kDa)

4.46

Isoelectric Point (pI)

43.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000385)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g23713 FvH4_1g25744 FvH4_2g00261 FvH4_2g00262 FvH4_2g15681 FvH4_2g17851 FvH4_2g35550 FvH4_3g05280 FvH4_3g10531 FvH4_3g25910 FvH4_3g28953 FvH4_3g33371 FvH4_3g33536 FvH4_3g36090 FvH4_4g03471 FvH4_4g03480 FvH4_4g06701 FvH4_4g19351 FvH4_4g34281 FvH4_5g00040 FvH4_5g03811 FvH4_5g03812 FvH4_5g11822 FvH4_5g30921 FvH4_5g31701 FvH4_6g12161 FvH4_6g15222 FvH4_6g15223 FvH4_6g17701 FvH4_6g17710 FvH4_6g19301 FvH4_6g33011 FvH4_6g34501 FvH4_6g50161 FvH4_7g04111 FvH4_7g04120 FvH4_7g04121 FvH4_7g04122 FvH4_7g04123 FvH4_7g28231 FvH4_c7g00010
malus_domestica MD12G1084200.v1.1
prunus_persica Prupe.1G206200_v2.0.a1 Prupe.8G085600_v2.0.a1
pyrus_communis pycom01g11080 pycom02g20500 pycom09g18370 pycom12555g00210 pycom13g23120 pycom14g10590 pycom16g17620 pycom16g22750
rosa_chinensis RchiOBHm_Chr2g0137481 RchiOBHm_Chr6g0251961 RchiOBHm_Chr7g0185821
rosa_laevigata RLG00000005585 RLG00000010281 RLG00000010912 RLG00000030342 RLG00000034281
rosa_multiflora Rmu_sc0000096.1_g000010 Rmu_sc0002481.1_g000045 Rmu_sc0003598.1_g000009 Rmu_sc0003863.1_g000019 Rmu_sc0003973.1_g000002 Rmu_sc0004823.1_g000050 Rmu_sc0005621.1_g000007 Rmu_sc0006537.1_g000030 Rmu_sc0006608.1_g000014 Rmu_sc0008506.1_g000007 Rmu_sc0014428.1_g000001 Rmu_sc0035437.1_g000001 Rmu_ssc0000396.1_g000022
rosa_roxburghii Rroxscaffold_175G00432300 Rroxscaffold_17G00435390 Rroxscaffold_27G00446590 Rroxscaffold_29G00441820 Rroxscaffold_31G00438110 Rroxscaffold_32G00442750 Rroxscaffold_33G00439810 Rroxscaffold_37G00445160 Rroxscaffold_4G00306500 Rroxscaffold_4G00327700 Rroxscaffold_4G00332630 Rroxscaffold_52G00439360 Rroxscaffold_63G00444420 Rroxscaffold_76G00448580 Rroxscaffold_7G00156270
rosa_rugosa Rorug03G0295200
rosa_samantha Rh1BG433700 Rh1CG115400 Rh2AG676300 Rh2CG341800 Rh2DG381400 Rh3BG370100 Rh3BG370200 Rh4AG441600 Rh4BG076500 Rh4BG107400 Rh5BG005600 Rh6BG010100 Rh7BG000200
rosa_wichuraiana Rw0G003820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 39
AciI CCGC 3 cut(s) 353, 365, 474
AclWI GGATC 5 cut(s) 23, 362, 375, 513, 526
AcoI YGGCCR 2 cut(s) 130, 555
AfeI AGCGCT 1 cut(s) 69
AfiI CCNNNNNNNGG 2 cut(s) 39, 693
AgsI TTSAA 3 cut(s) 503, 563, 577
AluBI AGCT 1 cut(s) 331
AluI AGCT 1 cut(s) 331
Alw26I GTCTC 1 cut(s) 674
AlwI GGATC 5 cut(s) 23, 362, 375, 513, 526
Ama87I CYCGRG 1 cut(s) 522
Aor51HI AGCGCT 1 cut(s) 69
AoxI GGCC 5 cut(s) 130, 466, 555, 565, 652
ApeKI GCWGC 1 cut(s) 122
AspLEI GCGC 1 cut(s) 70
AsuC2I CCSGG 2 cut(s) 523, 524
AsuHPI GGTGA 4 cut(s) 367, 439, 538, 646
AsuNHI GCTAGC 1 cut(s) 145
AvaI CYCGRG 1 cut(s) 522
BaeGI GKGCMC 1 cut(s) 219
BalI TGGCCA 2 cut(s) 132, 557
BamHI GGATCC 2 cut(s) 367, 518
BauI CACGAG 1 cut(s) 347
BbsI GAAGAC 2 cut(s) 91, 644
BbvCI CCTCAGC 1 cut(s) 435
BbvI GCAGC 1 cut(s) 134
BccI CCATC 1 cut(s) 55
BceAI ACGGC 1 cut(s) 331
BcgI CGANNNNNNTGC 2 cut(s) 68, 102
BcnI CCSGG 2 cut(s) 523, 524
BcoDI GTCTC 1 cut(s) 674
BfaI CTAG 3 cut(s) 71, 146, 491
BfoI RGCGCY 1 cut(s) 71
BglII AGATCT 1 cut(s) 487
BisI GCNGC 1 cut(s) 123
BlsI GCNGC 1 cut(s) 124
Bme1390I CCNGG 2 cut(s) 523, 524
BmeT110I CYCGRG 1 cut(s) 522
BmiI GGNNCC 2 cut(s) 369, 520
BmrFI CCNGG 2 cut(s) 523, 524
BmsI GCATC 5 cut(s) 151, 180, 270, 501, 697
BmtI GCTAGC 1 cut(s) 149
BpiI GAAGAC 2 cut(s) 91, 644
BpmI CTGGAG 1 cut(s) 608
Bpu10I CCTNAGC 1 cut(s) 435
BpuEI CTTGAG 2 cut(s) 317, 629
BpuMI CCSGG 2 cut(s) 523, 524
BsaBI GATNNNNATC 1 cut(s) 236
BsaJI CCNNGG 2 cut(s) 469, 522
Bsc4I CCNNNNNNNGG 2 cut(s) 39, 693
Bse1I ACTGG 1 cut(s) 126
Bse8I GATNNNNATC 1 cut(s) 236
BseDI CCNNGG 2 cut(s) 469, 522
BseGI GGATG 2 cut(s) 112, 544
BseJI GATNNNNATC 1 cut(s) 236
BseLI CCNNNNNNNGG 2 cut(s) 39, 693
BseMII CTCAG 1 cut(s) 426
BseNI ACTGG 1 cut(s) 126
BseRI GAGGAG 3 cut(s) 200, 242, 626
BseSI GKGCMC 1 cut(s) 219
BseXI GCAGC 1 cut(s) 134
BshFI GGCC 5 cut(s) 132, 468, 557, 567, 654
BsiHKCI CYCGRG 1 cut(s) 522
BsiSI CCGG 1 cut(s) 523
BslI CCNNNNNNNGG 2 cut(s) 39, 693
BsmAI GTCTC 1 cut(s) 674
BsnI GGCC 5 cut(s) 132, 468, 557, 567, 654
BsoBI CYCGRG 1 cut(s) 522
Bsp1286I GDGCHC 1 cut(s) 219
Bsp143I GATC 6 cut(s) 28, 237, 367, 400, 487, 518
BspACI CCGC 3 cut(s) 353, 365, 474
BspANI GGCC 5 cut(s) 132, 468, 557, 567, 654
BspCNI CTCAG 1 cut(s) 427
BspLI GGNNCC 2 cut(s) 369, 520
BspOI GCTAGC 1 cut(s) 149
BspPI GGATC 5 cut(s) 23, 362, 375, 513, 526
BsrI ACTGG 1 cut(s) 126
BssECI CCNNGG 2 cut(s) 469, 522
BssMI GATC 6 cut(s) 28, 237, 367, 400, 487, 518
BssSI CACGAG 1 cut(s) 347
BssT1I CCWWGG 1 cut(s) 469
Bst2BI CACGAG 1 cut(s) 347
Bst4CI ACNGT 1 cut(s) 25
BstC8I GCNNGC 2 cut(s) 147, 720
BstDEI CTNAG 7 cut(s) 83, 222, 404, 435, 656, 672, 711
BstF5I GGATG 2 cut(s) 112, 544
BstH2I RGCGCY 1 cut(s) 71
BstHHI GCGC 1 cut(s) 70
BstKTI GATC 6 cut(s) 31, 240, 370, 403, 490, 521
BstMAI GTCTC 1 cut(s) 674
BstMBI GATC 6 cut(s) 28, 237, 367, 400, 487, 518
BstNSI RCATGY 1 cut(s) 287
BstSCI CCNGG 2 cut(s) 521, 522
BstSLI GKGCMC 1 cut(s) 219
BstV1I GCAGC 1 cut(s) 134
BstV2I GAAGAC 2 cut(s) 91, 644
BstX2I RGATCY 3 cut(s) 367, 487, 518
BstYI RGATCY 3 cut(s) 367, 487, 518
BsuRI GGCC 5 cut(s) 132, 468, 557, 567, 654
BtsCI GGATG 2 cut(s) 112, 544
BtsIMutI CAGTG 2 cut(s) 133, 247
Cac8I GCNNGC 2 cut(s) 147, 720
CfoI GCGC 1 cut(s) 70
Cfr9I CCCGGG 1 cut(s) 522
CspCI CAANNNNNGTGG 4 cut(s) 139, 174, 657, 692
CviAII CATG 4 cut(s) 56, 212, 284, 412
DdeI CTNAG 7 cut(s) 83, 222, 404, 435, 656, 672, 711
DpnI GATC 6 cut(s) 30, 239, 369, 402, 489, 520
DpnII GATC 6 cut(s) 28, 237, 367, 400, 487, 518
EaeI YGGCCR 2 cut(s) 130, 555
EciI GGCGGA 2 cut(s) 380, 489
Eco130I CCWWGG 1 cut(s) 469
Eco147I AGGCCT 1 cut(s) 654
Eco47III AGCGCT 1 cut(s) 69
Eco88I CYCGRG 1 cut(s) 522
EcoT14I CCWWGG 1 cut(s) 469
EcoT22I ATGCAT 1 cut(s) 285
ErhI CCWWGG 1 cut(s) 469
FaeI CATG 4 cut(s) 59, 215, 287, 415
FatI CATG 4 cut(s) 55, 211, 283, 411
Fnu4HI GCNGC 1 cut(s) 123
FokI GGATG 2 cut(s) 119, 551
Fsp4HI GCNGC 1 cut(s) 123
FspBI CTAG 3 cut(s) 71, 146, 491
GlaI GCGC 1 cut(s) 69
GluI GCNGC 1 cut(s) 123
GsuI CTGGAG 1 cut(s) 608
HaeII RGCGCY 1 cut(s) 71
HaeIII GGCC 5 cut(s) 132, 468, 557, 567, 654
HapII CCGG 1 cut(s) 523
HhaI GCGC 1 cut(s) 70
Hin1II CATG 4 cut(s) 59, 215, 287, 415
Hin6I GCGC 1 cut(s) 68
HinP1I GCGC 1 cut(s) 68
HincII GTYRAC 1 cut(s) 289
HindII GTYRAC 1 cut(s) 289
HinfI GANTC 2 cut(s) 208, 662
HpaII CCGG 1 cut(s) 523
HphI GGTGA 4 cut(s) 367, 439, 538, 646
Hpy166II GTNNAC 4 cut(s) 250, 262, 289, 358
Hpy188III TCNNGA 2 cut(s) 339, 702
Hpy8I GTNNAC 4 cut(s) 250, 262, 289, 358
Hpy99I CGWCG 1 cut(s) 401
HpyAV CCTTC 2 cut(s) 536, 557
HpyCH4III ACNGT 1 cut(s) 25
HpyCH4IV ACGT 2 cut(s) 152, 170
HpyCH4V TGCA 6 cut(s) 10, 20, 193, 283, 307, 668
HpyF3I CTNAG 7 cut(s) 83, 222, 404, 435, 656, 672, 711
HpySE526I ACGT 2 cut(s) 152, 170
Hsp92II CATG 4 cut(s) 59, 215, 287, 415
HspAI GCGC 1 cut(s) 68
Kzo9I GATC 6 cut(s) 28, 237, 367, 400, 487, 518
LpnPI CCDG 6 cut(s) 139, 324, 435, 536, 572, 633
Lsp1109I GCAGC 1 cut(s) 134
LweI GCATC 5 cut(s) 151, 180, 270, 501, 697
MaeI CTAG 3 cut(s) 71, 146, 491
MaeII ACGT 2 cut(s) 152, 170
MaeIII GTNAC 3 cut(s) 136, 407, 445
MalI GATC 6 cut(s) 30, 239, 369, 402, 489, 520
MboI GATC 6 cut(s) 28, 237, 367, 400, 487, 518
MboII GAAGA 3 cut(s) 91, 452, 649
MflI RGATCY 3 cut(s) 367, 487, 518
MhlI GDGCHC 1 cut(s) 219
MlsI TGGCCA 2 cut(s) 132, 557
MluCI AATT 1 cut(s) 533
MluNI TGGCCA 2 cut(s) 132, 557
MlyI GAGTC 1 cut(s) 217
Mox20I TGGCCA 2 cut(s) 132, 557
Mph1103I ATGCAT 1 cut(s) 285
MscI TGGCCA 2 cut(s) 132, 557
MseI TTAA 2 cut(s) 531, 724
MslI CAYNNNNRTG 1 cut(s) 257
Msp20I TGGCCA 2 cut(s) 132, 557
MspI CCGG 1 cut(s) 523
MspR9I CCNGG 2 cut(s) 523, 524
NciI CCSGG 2 cut(s) 523, 524
NdeII GATC 6 cut(s) 28, 237, 367, 400, 487, 518
NheI GCTAGC 1 cut(s) 145
NlaIII CATG 4 cut(s) 59, 215, 287, 415
NlaIV GGNNCC 2 cut(s) 369, 520
NmuCI GTSAC 2 cut(s) 407, 445
NsiI ATGCAT 1 cut(s) 285
NspI RCATGY 1 cut(s) 287
PceI AGGCCT 1 cut(s) 654
PfeI GAWTC 1 cut(s) 662
PflMI CCANNNNNTGG 1 cut(s) 39
PkrI GCNGC 1 cut(s) 124
PleI GAGTC 1 cut(s) 216
PpsI GAGTC 1 cut(s) 216
PspN4I GGNNCC 2 cut(s) 369, 520
PsuI RGATCY 3 cut(s) 367, 487, 518
RseI CAYNNNNRTG 1 cut(s) 257
SaqAI TTAA 2 cut(s) 531, 724
SatI GCNGC 1 cut(s) 123
Sau3AI GATC 6 cut(s) 28, 237, 367, 400, 487, 518
SchI GAGTC 1 cut(s) 217
ScrFI CCNGG 2 cut(s) 523, 524
SduI GDGCHC 1 cut(s) 219
SfaNI GCATC 5 cut(s) 151, 180, 270, 501, 697
SmaI CCCGGG 1 cut(s) 524
SmiMI CAYNNNNRTG 1 cut(s) 257
SmlI CTYRAG 2 cut(s) 332, 608
SmoI CTYRAG 2 cut(s) 332, 608
Sse9I AATT 1 cut(s) 533
SseBI AGGCCT 1 cut(s) 654
SsiI CCGC 3 cut(s) 353, 365, 474
SspMI CTAG 3 cut(s) 71, 146, 491
StuI AGGCCT 1 cut(s) 654
StyD4I CCNGG 2 cut(s) 521, 522
StyI CCWWGG 1 cut(s) 469
TaaI ACNGT 1 cut(s) 25
TaiI ACGT 2 cut(s) 155, 173
TaqI TCGA 2 cut(s) 177, 624
TasI AATT 1 cut(s) 533
TfiI GAWTC 1 cut(s) 662
Tru1I TTAA 2 cut(s) 531, 724
Tru9I TTAA 2 cut(s) 531, 724
TscAI CASTG 2 cut(s) 133, 247
TseFI GTSAC 2 cut(s) 407, 445
TseI GCWGC 1 cut(s) 122
Tsp45I GTSAC 2 cut(s) 407, 445
TspDTI ATGAA 2 cut(s) 163, 555
TspMI CCCGGG 1 cut(s) 522
TspRI CASTG 2 cut(s) 133, 247
Van91I CCANNNNNTGG 1 cut(s) 39
XceI RCATGY 1 cut(s) 287
XmaI CCCGGG 1 cut(s) 522
XspI CTAG 3 cut(s) 71, 146, 491
Zsp2I ATGCAT 1 cut(s) 285
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.