FvH4_3g33371

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000385
Physical Location & Seq
Forward (+)
28795867 .. 28797036
1170 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g33371.t1

Sequence Viewer

Length: 579 bp
ATGGATGACTATGGCGTGGTAATAGGCCTTGAATTCATGGACAAGGTACGAGCATTTCCCATTCCATTCTATAACATCTTTTGCATTGTTGCGGATGGAGAATTGCCTTGCATGGTGCCCGTGGCAAGGCAAGCAAGGGAGAAGACAAAGGCACTATCCGCCATGCAACTTGCTAAAGCTTGGAAGAAGGGCAAGCCGACATTTCTAGCAACCCTCAAGATGGATGAGGAGGTTGGAGGAAAGTCCGAACCATTGCCAAAAGCAATAGAGGCAATCCTTGAGGAGTTTGGAGATGTAATGCCCAAGGAGTTGCCGAAGAGGGAGAACGAACTCTATGTGAAGAAGGAGAAATGTTCCTTTGCCAAGGAGGAAGTGGACTTCCTAGGCCACAAGATCAAGGATGGAAAGCTCTTGATGGAGGAAAACAAGGTGAAGGCCATCCAAGATTGGGAGCCGCCAACCAAGGTACCCGCACTTCGATCCTTCCTTGGCTTGGTTAATTATTATCGAAGGCTCATCAAGGGATACTCCGCCATTGCGGCACCCTTAACGGACCTTTTAAAGAAAAACAAGACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Asp_protease_2 Chromo RVT_1 Retrotrans_gag gag-asp_proteas rve

Protein Analysis

193

Amino Acids

21.74

Weight (kDa)

8.95

Isoelectric Point (pI)

46.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000385)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g23713 FvH4_1g25744 FvH4_2g00261 FvH4_2g00262 FvH4_2g15681 FvH4_2g17851 FvH4_2g35550 FvH4_3g05280 FvH4_3g10531 FvH4_3g25910 FvH4_3g28953 FvH4_3g33371 FvH4_3g33536 FvH4_3g36090 FvH4_4g03471 FvH4_4g03480 FvH4_4g06701 FvH4_4g19351 FvH4_4g34281 FvH4_5g00040 FvH4_5g03811 FvH4_5g03812 FvH4_5g11822 FvH4_5g30921 FvH4_5g31701 FvH4_6g12161 FvH4_6g15222 FvH4_6g15223 FvH4_6g17701 FvH4_6g17710 FvH4_6g19301 FvH4_6g33011 FvH4_6g34501 FvH4_6g50161 FvH4_7g04111 FvH4_7g04120 FvH4_7g04121 FvH4_7g04122 FvH4_7g04123 FvH4_7g28231 FvH4_c7g00010
malus_domestica MD12G1084200.v1.1
prunus_persica Prupe.1G206200_v2.0.a1 Prupe.8G085600_v2.0.a1
pyrus_communis pycom01g11080 pycom02g20500 pycom09g18370 pycom12555g00210 pycom13g23120 pycom14g10590 pycom16g17620 pycom16g22750
rosa_chinensis RchiOBHm_Chr2g0137481 RchiOBHm_Chr6g0251961 RchiOBHm_Chr7g0185821
rosa_laevigata RLG00000005585 RLG00000010281 RLG00000010912 RLG00000030342 RLG00000034281
rosa_multiflora Rmu_sc0000096.1_g000010 Rmu_sc0002481.1_g000045 Rmu_sc0003598.1_g000009 Rmu_sc0003863.1_g000019 Rmu_sc0003973.1_g000002 Rmu_sc0004823.1_g000050 Rmu_sc0005621.1_g000007 Rmu_sc0006537.1_g000030 Rmu_sc0006608.1_g000014 Rmu_sc0008506.1_g000007 Rmu_sc0014428.1_g000001 Rmu_sc0035437.1_g000001 Rmu_ssc0000396.1_g000022
rosa_roxburghii Rroxscaffold_175G00432300 Rroxscaffold_17G00435390 Rroxscaffold_27G00446590 Rroxscaffold_29G00441820 Rroxscaffold_31G00438110 Rroxscaffold_32G00442750 Rroxscaffold_33G00439810 Rroxscaffold_37G00445160 Rroxscaffold_4G00306500 Rroxscaffold_4G00327700 Rroxscaffold_4G00332630 Rroxscaffold_52G00439360 Rroxscaffold_63G00444420 Rroxscaffold_76G00448580 Rroxscaffold_7G00156270
rosa_rugosa Rorug03G0295200
rosa_samantha Rh1BG433700 Rh1CG115400 Rh2AG676300 Rh2CG341800 Rh2DG381400 Rh3BG370100 Rh3BG370200 Rh4AG441600 Rh4BG076500 Rh4BG107400 Rh5BG005600 Rh6BG010100 Rh7BG000200
rosa_wichuraiana Rw0G003820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 466
AccB1I GGYRCC 3 cut(s) 115, 466, 541
AciI CCGC 6 cut(s) 92, 159, 455, 471, 531, 539
AclWI GGATC 1 cut(s) 474
AcsI RAATTY 1 cut(s) 32
AfaI GTAC 2 cut(s) 48, 468
AfiI CCNNNNNNNGG 4 cut(s) 126, 220, 448, 493
AgsI TTSAA 1 cut(s) 32
AluBI AGCT 2 cut(s) 179, 409
AluI AGCT 2 cut(s) 179, 409
AlwI GGATC 1 cut(s) 474
AoxI GGCC 3 cut(s) 25, 385, 435
ApoI RAATTY 1 cut(s) 32
Asp718I GGTACC 1 cut(s) 466
AspA2I CCTAGG 1 cut(s) 382
AspS9I GGNCC 1 cut(s) 553
AsuHPI GGTGA 1 cut(s) 442
AvaII GGWCC 1 cut(s) 553
AvrII CCTAGG 1 cut(s) 382
BaeGI GKGCMC 1 cut(s) 120
BaeI ACNNNNGTAYC 2 cut(s) 450, 483
BanI GGYRCC 3 cut(s) 115, 466, 541
BarI GAAGNNNNNNTAC 2 cut(s) 459, 491
BbsI GAAGAC 1 cut(s) 149
BccI CCATC 5 cut(s) 89, 214, 395, 409, 446
BciVI GTATCC 1 cut(s) 518
BfaI CTAG 2 cut(s) 206, 383
BfuI GTATCC 1 cut(s) 518
BglI GCCNNNNNGGC 1 cut(s) 539
BisI GCNGC 2 cut(s) 455, 540
BlnI CCTAGG 1 cut(s) 382
BlsI GCNGC 2 cut(s) 456, 541
Bme18I GGWCC 1 cut(s) 553
BmgT120I GGNCC 1 cut(s) 553
BmiI GGNNCC 4 cut(s) 117, 453, 468, 543
BpiI GAAGAC 1 cut(s) 149
BpuEI CTTGAG 2 cut(s) 200, 299
BsaJI CCNNGG 6 cut(s) 120, 303, 363, 382, 462, 487
Bsc4I CCNNNNNNNGG 4 cut(s) 126, 220, 448, 493
Bse3DI GCAATG 2 cut(s) 251, 534
BseDI CCNNGG 6 cut(s) 120, 303, 363, 382, 462, 487
BseGI GGATG 5 cut(s) 10, 100, 229, 406, 438
BseLI CCNNNNNNNGG 4 cut(s) 126, 220, 448, 493
BseMI GCAATG 2 cut(s) 251, 534
BseRI GAGGAG 2 cut(s) 242, 296
BseSI GKGCMC 1 cut(s) 120
BshFI GGCC 3 cut(s) 27, 387, 437
BshNI GGYRCC 3 cut(s) 115, 466, 541
BslI CCNNNNNNNGG 4 cut(s) 126, 220, 448, 493
BsnI GGCC 3 cut(s) 27, 387, 437
Bsp1286I GDGCHC 1 cut(s) 120
Bsp143I GATC 2 cut(s) 393, 479
BspACI CCGC 6 cut(s) 92, 159, 455, 471, 531, 539
BspANI GGCC 3 cut(s) 27, 387, 437
BspLI GGNNCC 4 cut(s) 117, 453, 468, 543
BspPI GGATC 1 cut(s) 474
BspT107I GGYRCC 3 cut(s) 115, 466, 541
BsrDI GCAATG 2 cut(s) 251, 534
BssECI CCNNGG 6 cut(s) 120, 303, 363, 382, 462, 487
BssMI GATC 2 cut(s) 393, 479
BssT1I CCWWGG 5 cut(s) 303, 363, 382, 462, 487
Bst6I CTCTTC 1 cut(s) 311
BstC8I GCNNGC 2 cut(s) 132, 194
BstDSI CCRYGG 1 cut(s) 120
BstF5I GGATG 5 cut(s) 10, 100, 229, 406, 438
BstKTI GATC 2 cut(s) 396, 482
BstMBI GATC 2 cut(s) 393, 479
BstMWI GCNNNNNNNGC 4 cut(s) 131, 158, 269, 539
BstSLI GKGCMC 1 cut(s) 120
BstV2I GAAGAC 1 cut(s) 149
BsuI GTATCC 1 cut(s) 518
BsuRI GGCC 3 cut(s) 27, 387, 437
BtgI CCRYGG 1 cut(s) 120
BtsCI GGATG 5 cut(s) 10, 100, 229, 406, 438
Cac8I GCNNGC 2 cut(s) 132, 194
Cfr13I GGNCC 1 cut(s) 553
Csp6I GTAC 2 cut(s) 47, 467
CviAII CATG 4 cut(s) 37, 112, 163, 576
CviJI RGCY 9 cut(s) 27, 179, 196, 387, 409, 437, 454, 492, 514
CviKI_1 RGCY 9 cut(s) 27, 179, 196, 387, 409, 437, 454, 492, 514
CviQI GTAC 2 cut(s) 47, 467
DpnI GATC 2 cut(s) 395, 481
DpnII GATC 2 cut(s) 393, 479
DraI TTTAAA 1 cut(s) 561
Eam1104I CTCTTC 1 cut(s) 311
EarI CTCTTC 1 cut(s) 311
EciI GGCGGA 2 cut(s) 148, 520
Eco130I CCWWGG 5 cut(s) 303, 363, 382, 462, 487
Eco147I AGGCCT 1 cut(s) 27
Eco47I GGWCC 1 cut(s) 553
EcoRI GAATTC 1 cut(s) 32
EcoT14I CCWWGG 5 cut(s) 303, 363, 382, 462, 487
ErhI CCWWGG 5 cut(s) 303, 363, 382, 462, 487
FaeI CATG 4 cut(s) 40, 115, 166, 579
FaiI YATR 7 cut(s) 12, 38, 72, 113, 164, 336, 577
FatI CATG 4 cut(s) 36, 111, 162, 575
FauI CCCGC 1 cut(s) 478
Fnu4HI GCNGC 2 cut(s) 455, 540
FokI GGATG 5 cut(s) 17, 107, 236, 413, 425
Fsp4HI GCNGC 2 cut(s) 455, 540
FspBI CTAG 2 cut(s) 206, 383
GluI GCNGC 2 cut(s) 455, 540
HaeIII GGCC 3 cut(s) 27, 387, 437
Hin1II CATG 4 cut(s) 40, 115, 166, 579
HindIII AAGCTT 1 cut(s) 177
HphI GGTGA 1 cut(s) 442
Hpy166II GTNNAC 1 cut(s) 376
Hpy188I TCNGA 1 cut(s) 247
Hpy188III TCNNGA 2 cut(s) 217, 412
Hpy8I GTNNAC 1 cut(s) 376
HpyAV CCTTC 5 cut(s) 181, 337, 427, 493, 504
HpyCH4V TGCA 3 cut(s) 84, 111, 166
HpyF10VI GCNNNNNNNGC 4 cut(s) 131, 158, 269, 539
Hsp92II CATG 4 cut(s) 40, 115, 166, 579
KpnI GGTACC 1 cut(s) 470
Kzo9I GATC 2 cut(s) 393, 479
LmnI GCTCC 1 cut(s) 451
MaeI CTAG 2 cut(s) 206, 383
MalI GATC 2 cut(s) 395, 481
MboI GATC 2 cut(s) 393, 479
MboII GAAGA 4 cut(s) 154, 196, 328, 352
MhlI GDGCHC 1 cut(s) 120
MluCI AATT 3 cut(s) 32, 101, 499
MmeI TCCRAC 1 cut(s) 214
MnlI CCTC 9 cut(s) 220, 223, 224, 230, 262, 274, 312, 361, 412
MseI TTAA 3 cut(s) 498, 548, 560
MwoI GCNNNNNNNGC 4 cut(s) 131, 158, 269, 539
NdeII GATC 2 cut(s) 393, 479
NlaIII CATG 4 cut(s) 40, 115, 166, 579
NlaIV GGNNCC 4 cut(s) 117, 453, 468, 543
PceI AGGCCT 1 cut(s) 27
PkrI GCNGC 2 cut(s) 456, 541
PspN4I GGNNCC 4 cut(s) 117, 453, 468, 543
PspPI GGNCC 1 cut(s) 553
RsaI GTAC 2 cut(s) 48, 468
RsaNI GTAC 2 cut(s) 47, 467
SaqAI TTAA 3 cut(s) 498, 548, 560
SatI GCNGC 2 cut(s) 455, 540
Sau3AI GATC 2 cut(s) 393, 479
Sau96I GGNCC 1 cut(s) 553
SduI GDGCHC 1 cut(s) 120
SetI ASST 7 cut(s) 48, 181, 234, 411, 432, 468, 558
SinI GGWCC 1 cut(s) 553
SmlI CTYRAG 2 cut(s) 215, 278
SmoI CTYRAG 2 cut(s) 215, 278
Sse9I AATT 3 cut(s) 32, 101, 499
SseBI AGGCCT 1 cut(s) 27
SsiI CCGC 6 cut(s) 92, 159, 455, 471, 531, 539
SspMI CTAG 2 cut(s) 206, 383
StuI AGGCCT 1 cut(s) 27
StyI CCWWGG 5 cut(s) 303, 363, 382, 462, 487
TaqI TCGA 2 cut(s) 478, 508
TasI AATT 3 cut(s) 32, 101, 499
TauI GCSGC 2 cut(s) 457, 542
Tru1I TTAA 3 cut(s) 498, 548, 560
Tru9I TTAA 3 cut(s) 498, 548, 560
TspDTI ATGAA 1 cut(s) 25
TspGWI ACGGA 1 cut(s) 566
VpaK11BI GGWCC 1 cut(s) 553
XapI RAATTY 1 cut(s) 32
XcmI CCANNNNNNNNNTGG 1 cut(s) 370
XmaJI CCTAGG 1 cut(s) 382
XspI CTAG 2 cut(s) 206, 383
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.