Rroxscaffold_29G00441820

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000029
OG0000385
Physical Location & Seq
Reverse (-)
107730 .. 111950
4221 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_29G00441820.1

Sequence Viewer

Length: 1611 bp
ATGGCCGGGCTTTCTTCGAAGGAGCGGATCGAGAGACTTGAAGCATTAGTCGGTGACCCAAGAATAGATGGGGGAGAGTCCCTAACATTGGCGGTGCAGTGCACACGAATGGGGGCAGCCATCGCTGAGATGGACACCGCCTTCAAGCGATTCAAGGAAGAAGTCAACGGCAAGTTAACTTCCATCGTGGAAGAGCTTGCAGGCCTAATGAAAGCGGTGGAAGAAAATGGCGAGGAGGCAAAGTCTGATGTCAGGGACTTGGAGGGGGAGATCAACCTTCTCAAGAGGGTACTGAATCAGGAGATCCCGGTTGCTTCAAAGGTGAAAGTGCCGGAACCAAAAGCCTTCCTTGGCGTTCGAAATGCAAAGGAGTTAGAGAACTTCCTTTGGGATATGGAGCAGTATTTCATTGCTGCTCGCATTCCGACGGTGGAGCAAGTCTCCATTACCAGCATGTATCTTTCAGGAGATGCCAAACTATGGTGGCGGACTCGGGTGCAAGATGATGCTAAAATGGGGAGACCCAAGATCGAGGAGTGGGAAACCCTGAAGAAGGAGTTGAAGACTCAATTCCTTCCGTGCAACGCCTCGTGGCTTGCAAGAAGCTCACTAAAGAAGCTTCAACACACAAGCTCAATACGAGAGTTTGTTAAGGAATTTAGTTCCTTGATGCTAGACATATCAGATATGTCAGAAGAGGACAAGCTGTTCAATTTTATGTCTGGGTTGCAACCCTGGGCATATGCGGAGCTGCGGAGGCAAGGTGTAAAGGATTTACAAGGGGCCATGGCAGCAGCGGACGGTTTGGTGGATTTTAGGAACAATGCCTCTACATCCACAAGTTCAAAGAAGGTACCGGAGAACAAAAAGTTCAAGGAAACCGCGCCCAAAGGTGGGAAGAAGTATGAGGGACAGAAGAAAGAGAGTACCAGTGGCAGCAAAAGGAATTCGGCTCCGTCCCATGACAAAGATAGAAAGTTCGGTGGCTGTTTCCTGTGTGGAGGACCACATCGTGCTAAGGAGTGCCCAAAGCGGGAGAGACTTACTGCCCTAGTTGCTGAGATAAACGAGGAGGGCAGCAGCGAACCCACTCCGCGCTTATCACCAATGCGACTTCTCAACGCAATGACAACAGAGAAGGTGGATCCCCAAGATGGGCTCATGTATGCAAAGGTGATGGTGAATGATATTGAGGTATTAGCGATGCTGGACACAGGGGCTACGAATAACTTCATTGCTGAGAGAGAAGCAAGAAGGCTGGGACTGAAGGGGGTGCCGAATTCTAGCAAGCTGAAGGCTGTGAACTCGGAGGCCAAACCGATTCAGGGTACCGCAACAGTGGACCTGAAAGTTGGAGATTGGGAGGGCGAGTGCAACCTATTGATAGTCCCCTTGGACGATTATGATCTGGTCCTTGGTGTCGACTTCTTCAAGCAGGCCAAAGTCGCGGTGGCACCTTATTTGAATGGGATTTTCGTTCATGATGAGAAATCCCCATGTTTTGTTAAAACAACGTTTGCGAGTCGTCTGTGGGACAGCAAACAAAAGCAGAAGGCAATATCTGCCAAGCAAGTGAAGGCGGGACTGAAAAAGGGGAACGAACTCTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

536

Amino Acids

59.69

Weight (kDa)

8.56

Isoelectric Point (pI)

39.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ty3_capsid PF19259 113 - 281 1.7e-09 Ty3 transposon capsid-like protein
Retrotrans_gag PF03732 149 - 245 1.7e-17 Retrotransposon gag protein
RVP_2 PF08284 374 - 494 5e-06 Retroviral aspartyl protease
Asp_protease PF09668 387 - 483 2.5e-06 Aspartyl protease
gag-asp_proteas PF13975 391 - 479 1.9e-11 gag-polyprotein putative aspartyl protease
Asp_protease_2 PF13650 391 - 476 5.7e-10 Aspartyl protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000385)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g23713 FvH4_1g25744 FvH4_2g00261 FvH4_2g00262 FvH4_2g15681 FvH4_2g17851 FvH4_2g35550 FvH4_3g05280 FvH4_3g10531 FvH4_3g25910 FvH4_3g28953 FvH4_3g33371 FvH4_3g33536 FvH4_3g36090 FvH4_4g03471 FvH4_4g03480 FvH4_4g06701 FvH4_4g19351 FvH4_4g34281 FvH4_5g00040 FvH4_5g03811 FvH4_5g03812 FvH4_5g11822 FvH4_5g30921 FvH4_5g31701 FvH4_6g12161 FvH4_6g15222 FvH4_6g15223 FvH4_6g17701 FvH4_6g17710 FvH4_6g19301 FvH4_6g33011 FvH4_6g34501 FvH4_6g50161 FvH4_7g04111 FvH4_7g04120 FvH4_7g04121 FvH4_7g04122 FvH4_7g04123 FvH4_7g28231 FvH4_c7g00010
malus_domestica MD12G1084200.v1.1
prunus_persica Prupe.1G206200_v2.0.a1 Prupe.8G085600_v2.0.a1
pyrus_communis pycom01g11080 pycom02g20500 pycom09g18370 pycom12555g00210 pycom13g23120 pycom14g10590 pycom16g17620 pycom16g22750
rosa_chinensis RchiOBHm_Chr2g0137481 RchiOBHm_Chr6g0251961 RchiOBHm_Chr7g0185821
rosa_laevigata RLG00000005585 RLG00000010281 RLG00000010912 RLG00000030342 RLG00000034281
rosa_multiflora Rmu_sc0000096.1_g000010 Rmu_sc0002481.1_g000045 Rmu_sc0003598.1_g000009 Rmu_sc0003863.1_g000019 Rmu_sc0003973.1_g000002 Rmu_sc0004823.1_g000050 Rmu_sc0005621.1_g000007 Rmu_sc0006537.1_g000030 Rmu_sc0006608.1_g000014 Rmu_sc0008506.1_g000007 Rmu_sc0014428.1_g000001 Rmu_sc0035437.1_g000001 Rmu_ssc0000396.1_g000022
rosa_roxburghii Rroxscaffold_175G00432300 Rroxscaffold_17G00435390 Rroxscaffold_27G00446590 Rroxscaffold_29G00441820 Rroxscaffold_31G00438110 Rroxscaffold_32G00442750 Rroxscaffold_33G00439810 Rroxscaffold_37G00445160 Rroxscaffold_4G00306500 Rroxscaffold_4G00327700 Rroxscaffold_4G00332630 Rroxscaffold_52G00439360 Rroxscaffold_63G00444420 Rroxscaffold_76G00448580 Rroxscaffold_7G00156270
rosa_rugosa Rorug03G0295200
rosa_samantha Rh1BG433700 Rh1CG115400 Rh2AG676300 Rh2CG341800 Rh2DG381400 Rh3BG370100 Rh3BG370200 Rh4AG441600 Rh4BG076500 Rh4BG107400 Rh5BG005600 Rh6BG010100 Rh7BG000200
rosa_wichuraiana Rw0G003820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 2 cut(s) 853, 1328
AccB1I GGYRCC 4 cut(s) 853, 1273, 1328, 1453
AccB7I CCANNNNNTGG 1 cut(s) 480
AccBSI CCGCTC 1 cut(s) 25
AccI GTMKAC 1 cut(s) 1422
AccII CGCG 3 cut(s) 884, 1096, 1448
AclI AACGTT 1 cut(s) 1514
AclWI GGATC 4 cut(s) 35, 298, 1139, 1152
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 3 cut(s) 656, 946, 1279
AcuI CTGAAG 3 cut(s) 569, 1286, 1313
AdeI CACNNNGTG 1 cut(s) 1013
AfaI GTAC 4 cut(s) 291, 855, 928, 1330
AfiI CCNNNNNNNGG 9 cut(s) 88, 480, 553, 893, 894, 1033, 1154, 1155, 1325
AjnI CCWGG 1 cut(s) 734
AloI GAACNNNNNNTCC 2 cut(s) 692, 724
AluBI AGCT 7 cut(s) 196, 606, 619, 633, 706, 751, 1291
AluI AGCT 7 cut(s) 196, 606, 619, 633, 706, 751, 1291
Alw21I GWGCWC 1 cut(s) 104
Alw26I GTCTC 4 cut(s) 28, 445, 514, 1033
Alw44I GTGCAC 1 cut(s) 100
AlwI GGATC 4 cut(s) 35, 298, 1139, 1152
Ama87I CYCGRG 1 cut(s) 492
AoxI GGCC 5 cut(s) 3, 202, 783, 1311, 1437
ApaLI GTGCAC 1 cut(s) 100
ApeKI GCWGC 8 cut(s) 116, 413, 751, 791, 794, 936, 1077, 1080
ApoI RAATTY 3 cut(s) 656, 946, 1279
Asp700I GAANNNNTTC 1 cut(s) 1229
Asp718I GGTACC 2 cut(s) 853, 1328
AspLEI GCGC 2 cut(s) 886, 1098
AspS9I GGNCC 4 cut(s) 783, 1004, 1342, 1411
AsuC2I CCSGG 2 cut(s) 7, 308
AsuHPI GGTGA 5 cut(s) 65, 334, 1095, 1186, 1192
AsuII TTCGAA 2 cut(s) 17, 358
AvaI CYCGRG 1 cut(s) 492
AvaII GGWCC 3 cut(s) 1004, 1342, 1411
BaeGI GKGCMC 2 cut(s) 104, 1028
BamHI GGATCC 1 cut(s) 1144
BanI GGYRCC 4 cut(s) 853, 1273, 1328, 1453
BanII GRGCYC 1 cut(s) 1161
BauI CACGAG 1 cut(s) 589
BbsI GAAGAC 1 cut(s) 569
Bbv12I GWGCWC 1 cut(s) 104
BbvI GCAGC 8 cut(s) 128, 400, 738, 803, 806, 948, 1089, 1092
BccI CCATC 6 cut(s) 62, 124, 128, 191, 1148, 1171
BceAI ACGGC 1 cut(s) 184
BciT130I CCWGG 1 cut(s) 736
BcnI CCSGG 2 cut(s) 7, 308
BcoDI GTCTC 4 cut(s) 28, 445, 514, 1033
BfaI CTAG 3 cut(s) 674, 1052, 1284
BisI GCNGC 8 cut(s) 117, 414, 752, 792, 795, 937, 1078, 1081
BlsI GCNGC 8 cut(s) 118, 415, 753, 793, 796, 938, 1079, 1082
Bme1390I CCNGG 3 cut(s) 7, 308, 736
Bme18I GGWCC 3 cut(s) 1004, 1342, 1411
BmeT110I CYCGRG 1 cut(s) 492
BmgT120I GGNCC 4 cut(s) 783, 1004, 1342, 1411
BmiI GGNNCC 8 cut(s) 336, 784, 855, 954, 1146, 1275, 1330, 1455
BmrFI CCNGG 3 cut(s) 7, 308, 736
BmsI GCATC 4 cut(s) 460, 496, 660, 1194
BpiI GAAGAC 1 cut(s) 569
BplI GAGNNNNNCTC 2 cut(s) 425, 457
Bpu10I CCTNAGC 1 cut(s) 1017
Bpu14I TTCGAA 2 cut(s) 17, 358
BpuEI CTTGAG 1 cut(s) 266
BpuMI CCSGG 2 cut(s) 7, 308
BsaBI GATNNNNATC 1 cut(s) 1404
BsaI GGTCTC 1 cut(s) 514
BsaJI CCNNGG 6 cut(s) 349, 734, 735, 786, 1392, 1414
BsaWI WCCGGW 1 cut(s) 856
BsaXI ACNNNNNCTCC 6 cut(s) 227, 257, 748, 778, 1355, 1385
Bsc4I CCNNNNNNNGG 9 cut(s) 88, 480, 553, 893, 894, 1033, 1154, 1155, 1325
Bse1I ACTGG 1 cut(s) 930
Bse3DI GCAATG 3 cut(s) 408, 1131, 1233
Bse8I GATNNNNATC 1 cut(s) 1404
BseBI CCWGG 1 cut(s) 736
BseDI CCNNGG 6 cut(s) 349, 734, 735, 786, 1392, 1414
BseGI GGATG 1 cut(s) 833
BseJI GATNNNNATC 1 cut(s) 1404
BseLI CCNNNNNNNGG 9 cut(s) 88, 480, 553, 893, 894, 1033, 1154, 1155, 1325
BseMI GCAATG 3 cut(s) 408, 1131, 1233
BseMII CTCAG 3 cut(s) 117, 1050, 1230
BseNI ACTGG 1 cut(s) 930
BseRI GAGGAG 3 cut(s) 248, 548, 1085
BseSI GKGCMC 2 cut(s) 104, 1028
BseXI GCAGC 8 cut(s) 128, 400, 738, 803, 806, 948, 1089, 1092
BseYI CCCAGC 1 cut(s) 1258
BsgI GTGCAG 1 cut(s) 116
Bsh1236I CGCG 3 cut(s) 884, 1096, 1448
BshFI GGCC 5 cut(s) 5, 204, 785, 1313, 1439
BshNI GGYRCC 4 cut(s) 853, 1273, 1328, 1453
BsiHKAI GWGCWC 1 cut(s) 104
BsiHKCI CYCGRG 1 cut(s) 492
BsiSI CCGG 4 cut(s) 6, 308, 332, 857
BslFI GGGAC 8 cut(s) 64, 269, 924, 943, 1275, 1373, 1547, 1596
BslI CCNNNNNNNGG 9 cut(s) 88, 480, 553, 893, 894, 1033, 1154, 1155, 1325
BsmAI GTCTC 4 cut(s) 28, 445, 514, 1033
BsmFI GGGAC 8 cut(s) 64, 269, 924, 943, 1275, 1373, 1547, 1596
BsmI GAATGC 1 cut(s) 420
BsnI GGCC 5 cut(s) 5, 204, 785, 1313, 1439
Bso31I GGTCTC 1 cut(s) 514
BsoBI CYCGRG 1 cut(s) 492
Bsp119I TTCGAA 2 cut(s) 17, 358
Bsp1286I GDGCHC 3 cut(s) 104, 1028, 1161
Bsp143I GATC 6 cut(s) 27, 270, 303, 528, 1144, 1405
Bsp19I CCATGG 1 cut(s) 786
BspANI GGCC 5 cut(s) 5, 204, 785, 1313, 1439
BspCNI CTCAG 3 cut(s) 118, 1051, 1231
BspFNI CGCG 3 cut(s) 884, 1096, 1448
BspHI TCATGA 1 cut(s) 1480
BspLI GGNNCC 8 cut(s) 336, 784, 855, 954, 1146, 1275, 1330, 1455
BspPI GGATC 4 cut(s) 35, 298, 1139, 1152
BspQI GCTCTTC 1 cut(s) 186
BspT104I TTCGAA 2 cut(s) 17, 358
BspT107I GGYRCC 4 cut(s) 853, 1273, 1328, 1453
BspTNI GGTCTC 1 cut(s) 514
BsrBI CCGCTC 1 cut(s) 25
BsrDI GCAATG 3 cut(s) 408, 1131, 1233
BsrI ACTGG 1 cut(s) 930
BssECI CCNNGG 6 cut(s) 349, 734, 735, 786, 1392, 1414
BssMI GATC 6 cut(s) 27, 270, 303, 528, 1144, 1405
BssSI CACGAG 1 cut(s) 589
BssT1I CCWWGG 4 cut(s) 349, 786, 1392, 1414
Bst2BI CACGAG 1 cut(s) 589
Bst2UI CCWGG 1 cut(s) 736
Bst4CI ACNGT 3 cut(s) 430, 803, 1339
Bst6I CTCTTC 2 cut(s) 186, 690
BstAPI GCANNNNNTGC 1 cut(s) 1562
BstBI TTCGAA 2 cut(s) 17, 358
BstC8I GCNNGC 6 cut(s) 198, 202, 418, 597, 1289, 1437
BstDEI CTNAG 4 cut(s) 126, 1017, 1059, 1239
BstDSI CCRYGG 1 cut(s) 786
BstEII GGTNACC 1 cut(s) 53
BstENI CCTNNNNNAGG 1 cut(s) 551
BstF5I GGATG 1 cut(s) 833
BstFNI CGCG 3 cut(s) 884, 1096, 1448
BstHHI GCGC 2 cut(s) 886, 1098
BstKTI GATC 6 cut(s) 30, 273, 306, 531, 1147, 1408
BstMAI GTCTC 4 cut(s) 28, 445, 514, 1033
BstMBI GATC 6 cut(s) 27, 270, 303, 528, 1144, 1405
BstMWI GCNNNNNNNGC 6 cut(s) 122, 757, 791, 1055, 1445, 1562
BstNI CCWGG 1 cut(s) 736
BstNSI RCATGY 1 cut(s) 457
BstPI GGTNACC 1 cut(s) 53
BstSCI CCNGG 3 cut(s) 5, 306, 734
BstSLI GKGCMC 2 cut(s) 104, 1028
BstUI CGCG 3 cut(s) 884, 1096, 1448
BstV1I GCAGC 8 cut(s) 128, 400, 738, 803, 806, 948, 1089, 1092
BstV2I GAAGAC 1 cut(s) 569
BstX2I RGATCY 2 cut(s) 303, 1144
BstYI RGATCY 2 cut(s) 303, 1144
BsuRI GGCC 5 cut(s) 5, 204, 785, 1313, 1439
BtgI CCRYGG 1 cut(s) 786
BtgZI GCGATG 2 cut(s) 106, 1217
BtsCI GGATG 1 cut(s) 833
BtsI GCAGTG 1 cut(s) 104
BtsIMutI CAGTG 3 cut(s) 104, 937, 1344
Cac8I GCNNGC 6 cut(s) 198, 202, 418, 597, 1289, 1437
CciI TCATGA 1 cut(s) 1480
CfoI GCGC 2 cut(s) 886, 1098
Cfr13I GGNCC 4 cut(s) 783, 1004, 1342, 1411
Csp6I GTAC 4 cut(s) 290, 854, 927, 1329
CviAII CATG 6 cut(s) 454, 787, 962, 1162, 1481, 1497
CviQI GTAC 4 cut(s) 290, 854, 927, 1329
DdeI CTNAG 4 cut(s) 126, 1017, 1059, 1239
DpnI GATC 6 cut(s) 29, 272, 305, 530, 1146, 1407
DpnII GATC 6 cut(s) 27, 270, 303, 528, 1144, 1405
DraIII CACNNNGTG 1 cut(s) 1013
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 2 cut(s) 186, 690
EarI CTCTTC 2 cut(s) 186, 690
EciI GGCGGA 1 cut(s) 502
Eco130I CCWWGG 4 cut(s) 349, 786, 1392, 1414
Eco147I AGGCCT 1 cut(s) 204
Eco24I GRGCYC 1 cut(s) 1161
Eco31I GGTCTC 1 cut(s) 514
Eco47I GGWCC 3 cut(s) 1004, 1342, 1411
Eco57I CTGAAG 3 cut(s) 569, 1286, 1313
Eco88I CYCGRG 1 cut(s) 492
Eco91I GGTNACC 1 cut(s) 53
EcoNI CCTNNNNNAGG 1 cut(s) 551
EcoO65I GGTNACC 1 cut(s) 53
EcoRI GAATTC 2 cut(s) 946, 1279
EcoRII CCWGG 1 cut(s) 734
EcoT14I CCWWGG 4 cut(s) 349, 786, 1392, 1414
EcoT38I GRGCYC 1 cut(s) 1161
ErhI CCWWGG 4 cut(s) 349, 786, 1392, 1414
FaeI CATG 6 cut(s) 457, 790, 965, 1165, 1484, 1500
FalI AAGNNNNNCTT 2 cut(s) 333, 365
FaqI GGGAC 8 cut(s) 64, 269, 924, 943, 1275, 1373, 1547, 1596
FatI CATG 6 cut(s) 453, 786, 961, 1161, 1480, 1496
FauI CCCGC 2 cut(s) 1026, 1573
FauNDI CATATG 1 cut(s) 742
FblI GTMKAC 1 cut(s) 1422
Fnu4HI GCNGC 8 cut(s) 117, 414, 752, 792, 795, 937, 1078, 1081
FokI GGATG 1 cut(s) 820
FriOI GRGCYC 1 cut(s) 1161
Fsp4HI GCNGC 8 cut(s) 117, 414, 752, 792, 795, 937, 1078, 1081
FspBI CTAG 3 cut(s) 674, 1052, 1284
GlaI GCGC 2 cut(s) 885, 1097
GluI GCNGC 8 cut(s) 117, 414, 752, 792, 795, 937, 1078, 1081
GsaI CCCAGC 1 cut(s) 1262
HaeIII GGCC 5 cut(s) 5, 204, 785, 1313, 1439
HapII CCGG 4 cut(s) 6, 308, 332, 857
HhaI GCGC 2 cut(s) 886, 1098
Hin1II CATG 6 cut(s) 457, 790, 965, 1165, 1484, 1500
Hin6I GCGC 2 cut(s) 884, 1096
HinP1I GCGC 2 cut(s) 884, 1096
HincII GTYRAC 3 cut(s) 166, 177, 1423
HindII GTYRAC 3 cut(s) 166, 177, 1423
HindIII AAGCTT 1 cut(s) 617
HinfI GANTC 7 cut(s) 77, 150, 295, 490, 565, 1321, 1522
HpaI GTTAAC 1 cut(s) 177
HpaII CCGG 4 cut(s) 6, 308, 332, 857
HphI GGTGA 5 cut(s) 65, 334, 1095, 1186, 1192
Hpy166II GTNNAC 6 cut(s) 102, 166, 177, 1303, 1342, 1423
Hpy188I TCNGA 5 cut(s) 247, 426, 685, 694, 1309
Hpy188III TCNNGA 5 cut(s) 31, 283, 299, 465, 1481
Hpy8I GTNNAC 6 cut(s) 102, 166, 177, 1303, 1342, 1423
Hpy99I CGWCG 1 cut(s) 430
HpyCH4III ACNGT 3 cut(s) 430, 803, 1339
HpyCH4IV ACGT 1 cut(s) 1514
HpyF10VI GCNNNNNNNGC 6 cut(s) 122, 757, 791, 1055, 1445, 1562
HpyF3I CTNAG 4 cut(s) 126, 1017, 1059, 1239
HpySE526I ACGT 1 cut(s) 1514
Hsp92II CATG 6 cut(s) 457, 790, 965, 1165, 1484, 1500
HspAI GCGC 2 cut(s) 884, 1096
KpnI GGTACC 2 cut(s) 857, 1332
KspAI GTTAAC 1 cut(s) 177
Kzo9I GATC 6 cut(s) 27, 270, 303, 528, 1144, 1405
LguI GCTCTTC 1 cut(s) 186
LmnI GCTCC 5 cut(s) 22, 397, 433, 748, 958
Lsp1109I GCAGC 8 cut(s) 128, 400, 738, 803, 806, 948, 1089, 1092
LweI GCATC 4 cut(s) 460, 496, 660, 1194
MaeI CTAG 3 cut(s) 674, 1052, 1284
MaeII ACGT 1 cut(s) 1514
MaeIII GTNAC 1 cut(s) 53
MalI GATC 6 cut(s) 29, 272, 305, 530, 1146, 1407
MbiI CCGCTC 1 cut(s) 25
MboI GATC 6 cut(s) 27, 270, 303, 528, 1144, 1405
MflI RGATCY 2 cut(s) 303, 1144
MhlI GDGCHC 3 cut(s) 104, 1028, 1161
MluCI AATT 5 cut(s) 569, 656, 712, 946, 1279
MlyI GAGTC 4 cut(s) 86, 484, 559, 1531
MmeI TCCRAC 2 cut(s) 449, 1333
MroXI GAANNNNTTC 1 cut(s) 1229
MseI TTAA 3 cut(s) 176, 651, 1506
MslI CAYNNNNRTG 1 cut(s) 107
MspA1I CMGCKG 1 cut(s) 797
MspI CCGG 4 cut(s) 6, 308, 332, 857
MspR9I CCNGG 3 cut(s) 7, 308, 736
Mva1269I GAATGC 1 cut(s) 420
MvaI CCWGG 1 cut(s) 736
MvnI CGCG 3 cut(s) 884, 1096, 1448
MwoI GCNNNNNNNGC 6 cut(s) 122, 757, 791, 1055, 1445, 1562
NciI CCSGG 2 cut(s) 7, 308
NcoI CCATGG 1 cut(s) 786
NdeI CATATG 1 cut(s) 742
NdeII GATC 6 cut(s) 27, 270, 303, 528, 1144, 1405
NlaIII CATG 6 cut(s) 457, 790, 965, 1165, 1484, 1500
NlaIV GGNNCC 8 cut(s) 336, 784, 855, 954, 1146, 1275, 1330, 1455
NmuCI GTSAC 1 cut(s) 53
NspI RCATGY 1 cut(s) 457
NspV TTCGAA 2 cut(s) 17, 358
PagI TCATGA 1 cut(s) 1480
PasI CCCWGGG 1 cut(s) 735
PceI AGGCCT 1 cut(s) 204
PciSI GCTCTTC 1 cut(s) 186
PctI GAATGC 1 cut(s) 420
PdmI GAANNNNTTC 1 cut(s) 1229
PfeI GAWTC 3 cut(s) 150, 295, 1321
PflMI CCANNNNNTGG 1 cut(s) 480
PkrI GCNGC 8 cut(s) 118, 415, 753, 793, 796, 938, 1079, 1082
PleI GAGTC 4 cut(s) 85, 484, 559, 1530
PpsI GAGTC 4 cut(s) 85, 484, 559, 1530
Psp1406I AACGTT 1 cut(s) 1514
Psp6I CCWGG 1 cut(s) 734
PspEI GGTNACC 1 cut(s) 53
PspFI CCCAGC 1 cut(s) 1258
PspGI CCWGG 1 cut(s) 734
PspN4I GGNNCC 8 cut(s) 336, 784, 855, 954, 1146, 1275, 1330, 1455
PspPI GGNCC 4 cut(s) 783, 1004, 1342, 1411
PsuI RGATCY 2 cut(s) 303, 1144
RsaI GTAC 4 cut(s) 291, 855, 928, 1330
RsaNI GTAC 4 cut(s) 290, 854, 927, 1329
RseI CAYNNNNRTG 1 cut(s) 107
SalI GTCGAC 1 cut(s) 1421
SapI GCTCTTC 1 cut(s) 186
SaqAI TTAA 3 cut(s) 176, 651, 1506
SatI GCNGC 8 cut(s) 117, 414, 752, 792, 795, 937, 1078, 1081
Sau3AI GATC 6 cut(s) 27, 270, 303, 528, 1144, 1405
Sau96I GGNCC 4 cut(s) 783, 1004, 1342, 1411
SchI GAGTC 4 cut(s) 86, 484, 559, 1531
ScrFI CCNGG 3 cut(s) 7, 308, 736
SduI GDGCHC 3 cut(s) 104, 1028, 1161
SfaNI GCATC 4 cut(s) 460, 496, 660, 1194
SfuI TTCGAA 2 cut(s) 17, 358
SinI GGWCC 3 cut(s) 1004, 1342, 1411
SmiMI CAYNNNNRTG 1 cut(s) 107
SmlI CTYRAG 1 cut(s) 281
SmoI CTYRAG 1 cut(s) 281
Sse9I AATT 5 cut(s) 569, 656, 712, 946, 1279
SseBI AGGCCT 1 cut(s) 204
SspMI CTAG 3 cut(s) 674, 1052, 1284
StuI AGGCCT 1 cut(s) 204
StyD4I CCNGG 3 cut(s) 5, 306, 734
StyI CCWWGG 4 cut(s) 349, 786, 1392, 1414
TaaI ACNGT 3 cut(s) 430, 803, 1339
TaiI ACGT 1 cut(s) 1517
TaqI TCGA 5 cut(s) 17, 30, 358, 531, 1422
TasI AATT 5 cut(s) 569, 656, 712, 946, 1279
TfiI GAWTC 3 cut(s) 150, 295, 1321
Tru1I TTAA 3 cut(s) 176, 651, 1506
Tru9I TTAA 3 cut(s) 176, 651, 1506
TscAI CASTG 3 cut(s) 104, 937, 1344
TseFI GTSAC 1 cut(s) 53
TseI GCWGC 8 cut(s) 116, 413, 751, 791, 794, 936, 1077, 1080
Tsp45I GTSAC 1 cut(s) 53
TspDTI ATGAA 4 cut(s) 224, 397, 1222, 1469
TspGWI ACGGA 2 cut(s) 567, 945
TspRI CASTG 3 cut(s) 104, 937, 1344
Van91I CCANNNNNTGG 1 cut(s) 480
VneI GTGCAC 1 cut(s) 100
VpaK11BI GGWCC 3 cut(s) 1004, 1342, 1411
XagI CCTNNNNNAGG 1 cut(s) 551
XapI RAATTY 3 cut(s) 656, 946, 1279
XceI RCATGY 1 cut(s) 457
XcmI CCANNNNNNNNNTGG 2 cut(s) 127, 1447
XmiI GTMKAC 1 cut(s) 1422
XmnI GAANNNNTTC 1 cut(s) 1229
XspI CTAG 3 cut(s) 674, 1052, 1284
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.