Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0000385

Physical Location & Seq

Genomic Coordinates Reverse (-)

390085 .. 390315

Gene Structure 231 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g00262.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 231 bp

ATGTCCGGAGAAGGAGTTTCGGTGGAGCAAGCTGTTGCTGGCACCAAGAGGAGCCACAAGGAAGTACTTGCTGCCTTTGATGCACGACTCGGAAAGGTGGAATTGGCCGTGGTCGAGTTTGACACTCGACTTAACGATGACGTCATGACAAAGGGGAATCTCGCAGCGATGGTGGAAGAGTTGCAAGAGCAAATGCGCGGCGCTCTCAACATTATGGCAGATAAGATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004693 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051726 GO:0065007 GO:0071704 GO:0071944 GO:0097472 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

77

Amino Acids

8.23

Weight (kDa)

4.84

Isoelectric Point (pI)

40.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000385)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g23713 FvH4_1g25744 FvH4_2g00261 FvH4_2g00262 FvH4_2g15681 FvH4_2g17851 FvH4_2g35550 FvH4_3g05280 FvH4_3g10531 FvH4_3g25910 FvH4_3g28953 FvH4_3g33371 FvH4_3g33536 FvH4_3g36090 FvH4_4g03471 FvH4_4g03480 FvH4_4g06701 FvH4_4g19351 FvH4_4g34281 FvH4_5g00040 FvH4_5g03811 FvH4_5g03812 FvH4_5g11822 FvH4_5g30921 FvH4_5g31701 FvH4_6g12161 FvH4_6g15222 FvH4_6g15223 FvH4_6g17701 FvH4_6g17710 FvH4_6g19301 FvH4_6g33011 FvH4_6g34501 FvH4_6g50161 FvH4_7g04111 FvH4_7g04120 FvH4_7g04121 FvH4_7g04122 FvH4_7g04123 FvH4_7g28231 FvH4_c7g00010
malus_domestica	MD12G1084200.v1.1
prunus_persica	Prupe.1G206200_v2.0.a1 Prupe.8G085600_v2.0.a1
pyrus_communis	pycom01g11080 pycom02g20500 pycom09g18370 pycom12555g00210 pycom13g23120 pycom14g10590 pycom16g17620 pycom16g22750
rosa_chinensis	RchiOBHm_Chr2g0137481 RchiOBHm_Chr6g0251961 RchiOBHm_Chr7g0185821
rosa_laevigata	RLG00000005585 RLG00000010281 RLG00000010912 RLG00000030342 RLG00000034281
rosa_multiflora	Rmu_sc0000096.1_g000010 Rmu_sc0002481.1_g000045 Rmu_sc0003598.1_g000009 Rmu_sc0003863.1_g000019 Rmu_sc0003973.1_g000002 Rmu_sc0004823.1_g000050 Rmu_sc0005621.1_g000007 Rmu_sc0006537.1_g000030 Rmu_sc0006608.1_g000014 Rmu_sc0008506.1_g000007 Rmu_sc0014428.1_g000001 Rmu_sc0035437.1_g000001 Rmu_ssc0000396.1_g000022
rosa_roxburghii	Rroxscaffold_175G00432300 Rroxscaffold_17G00435390 Rroxscaffold_27G00446590 Rroxscaffold_29G00441820 Rroxscaffold_31G00438110 Rroxscaffold_32G00442750 Rroxscaffold_33G00439810 Rroxscaffold_37G00445160 Rroxscaffold_4G00306500 Rroxscaffold_4G00327700 Rroxscaffold_4G00332630 Rroxscaffold_52G00439360 Rroxscaffold_63G00444420 Rroxscaffold_76G00448580 Rroxscaffold_7G00156270
rosa_rugosa	Rorug03G0295200
rosa_samantha	Rh1BG433700 Rh1CG115400 Rh2AG676300 Rh2CG341800 Rh2DG381400 Rh3BG370100 Rh3BG370200 Rh4AG441600 Rh4BG076500 Rh4BG107400 Rh5BG005600 Rh6BG010100 Rh7BG000200
rosa_wichuraiana	Rw0G003820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	144
AccB1I	GGYRCC	1 cut(s)	41
AccII	CGCG	1 cut(s)	198
AccIII	TCCGGA	1 cut(s)	5
AciI	CCGC	1 cut(s)	198
AcoI	YGGCCR	1 cut(s)	105
AcyI	GRCGYC	1 cut(s)	141
AfaI	GTAC	1 cut(s)	66
AluBI	AGCT	1 cut(s)	32
AluI	AGCT	1 cut(s)	32
Aor13HI	TCCGGA	1 cut(s)	5
AoxI	GGCC	1 cut(s)	105
ApeKI	GCWGC	2 cut(s)	71, 164
AspLEI	GCGC	2 cut(s)	198, 203
BanI	GGYRCC	1 cut(s)	41
BbvI	GCAGC	2 cut(s)	58, 176
BccI	CCATC	1 cut(s)	163
BceAI	ACGGC	1 cut(s)	92
BfoI	RGCGCY	1 cut(s)	204
BglII	AGATCT	1 cut(s)	225
BisI	GCNGC	3 cut(s)	72, 165, 199
BlsI	GCNGC	3 cut(s)	73, 166, 200
BmcAI	AGTACT	1 cut(s)	66
BmiI	GGNNCC	2 cut(s)	43, 53
BmsI	GCATC	1 cut(s)	70
BsaHI	GRCGYC	1 cut(s)	141
BsaJI	CCNNGG	1 cut(s)	108
BsaWI	WCCGGW	1 cut(s)	5
BsaXI	ACNNNNNCTCC	3 cut(s)	6, 30, 36
BseAI	TCCGGA	1 cut(s)	5
BseDI	CCNNGG	1 cut(s)	108
BseRI	GAGGAG	1 cut(s)	64
BseXI	GCAGC	2 cut(s)	58, 176
Bsh1236I	CGCG	1 cut(s)	198
BshFI	GGCC	1 cut(s)	107
BshNI	GGYRCC	1 cut(s)	41
BsiSI	CCGG	1 cut(s)	6
BsnI	GGCC	1 cut(s)	107
Bsp13I	TCCGGA	1 cut(s)	5
Bsp143I	GATC	1 cut(s)	225
BspACI	CCGC	1 cut(s)	198
BspANI	GGCC	1 cut(s)	107
BspEI	TCCGGA	1 cut(s)	5
BspFNI	CGCG	1 cut(s)	198
BspHI	TCATGA	1 cut(s)	144
BspLI	GGNNCC	2 cut(s)	43, 53
BspT107I	GGYRCC	1 cut(s)	41
BssECI	CCNNGG	1 cut(s)	108
BssMI	GATC	1 cut(s)	225
BssNI	GRCGYC	1 cut(s)	141
Bst6I	CTCTTC	1 cut(s)	171
BstACI	GRCGYC	1 cut(s)	141
BstC8I	GCNNGC	2 cut(s)	30, 40
BstDSI	CCRYGG	1 cut(s)	108
BstFNI	CGCG	1 cut(s)	198
BstH2I	RGCGCY	1 cut(s)	204
BstHHI	GCGC	2 cut(s)	198, 203
BstKTI	GATC	1 cut(s)	228
BstMBI	GATC	1 cut(s)	225
BstMWI	GCNNNNNNNGC	1 cut(s)	80
BstUI	CGCG	1 cut(s)	198
BstV1I	GCAGC	2 cut(s)	58, 176
BstX2I	RGATCY	1 cut(s)	225
BstYI	RGATCY	1 cut(s)	225
BsuRI	GGCC	1 cut(s)	107
BtgI	CCRYGG	1 cut(s)	108
BtgZI	GCGATG	1 cut(s)	182
Cac8I	GCNNGC	2 cut(s)	30, 40
CciI	TCATGA	1 cut(s)	144
CfoI	GCGC	2 cut(s)	198, 203
Csp6I	GTAC	1 cut(s)	65
CviAII	CATG	1 cut(s)	145
CviJI	RGCY	3 cut(s)	32, 54, 107
CviKI_1	RGCY	3 cut(s)	32, 54, 107
CviQI	GTAC	1 cut(s)	65
DpnI	GATC	1 cut(s)	227
DpnII	GATC	1 cut(s)	225
EaeI	YGGCCR	1 cut(s)	105
Eam1104I	CTCTTC	1 cut(s)	171
EarI	CTCTTC	1 cut(s)	171
FaeI	CATG	1 cut(s)	148
FaiI	YATR	2 cut(s)	146, 215
FatI	CATG	1 cut(s)	144
Fnu4HI	GCNGC	3 cut(s)	72, 165, 199
Fsp4HI	GCNGC	3 cut(s)	72, 165, 199
GlaI	GCGC	2 cut(s)	197, 202
GluI	GCNGC	3 cut(s)	72, 165, 199
HaeII	RGCGCY	1 cut(s)	204
HaeIII	GGCC	1 cut(s)	107
HapII	CCGG	1 cut(s)	6
HhaI	GCGC	2 cut(s)	198, 203
Hin1I	GRCGYC	1 cut(s)	141
Hin1II	CATG	1 cut(s)	148
Hin6I	GCGC	2 cut(s)	196, 201
HinP1I	GCGC	2 cut(s)	196, 201
HinfI	GANTC	2 cut(s)	87, 157
HpaII	CCGG	1 cut(s)	6
Hpy188I	TCNGA	2 cut(s)	92, 230
Hpy188III	TCNNGA	2 cut(s)	6, 145
HpyAV	CCTTC	1 cut(s)	5
HpyCH4IV	ACGT	1 cut(s)	141
HpyCH4V	TGCA	2 cut(s)	83, 184
HpyF10VI	GCNNNNNNNGC	1 cut(s)	80
HpySE526I	ACGT	1 cut(s)	141
Hsp92I	GRCGYC	1 cut(s)	141
Hsp92II	CATG	1 cut(s)	148
HspAI	GCGC	2 cut(s)	196, 201
Kpn2I	TCCGGA	1 cut(s)	5
Kzo9I	GATC	1 cut(s)	225
LmnI	GCTCC	2 cut(s)	25, 51
LpnPI	CCDG	2 cut(s)	19, 24
Lsp1109I	GCAGC	2 cut(s)	58, 176
LweI	GCATC	1 cut(s)	70
MaeII	ACGT	1 cut(s)	141
MalI	GATC	1 cut(s)	227
MboI	GATC	1 cut(s)	225
MboII	GAAGA	1 cut(s)	188
MflI	RGATCY	1 cut(s)	225
MluCI	AATT	1 cut(s)	101
MlyI	GAGTC	1 cut(s)	81
MnlI	CCTC	1 cut(s)	42
MroI	TCCGGA	1 cut(s)	5
MseI	TTAA	1 cut(s)	132
MspI	CCGG	1 cut(s)	6
MteI	GCGCNGCGC	1 cut(s)	199
MvnI	CGCG	1 cut(s)	198
MwoI	GCNNNNNNNGC	1 cut(s)	80
NdeII	GATC	1 cut(s)	225
NlaIII	CATG	1 cut(s)	148
NlaIV	GGNNCC	2 cut(s)	43, 53
PagI	TCATGA	1 cut(s)	144
PfeI	GAWTC	1 cut(s)	157
PkrI	GCNGC	3 cut(s)	73, 166, 200
PleI	GAGTC	1 cut(s)	81
PpsI	GAGTC	1 cut(s)	81
PspN4I	GGNNCC	2 cut(s)	43, 53
PsuI	RGATCY	1 cut(s)	225
RsaI	GTAC	1 cut(s)	66
RsaNI	GTAC	1 cut(s)	65
SaqAI	TTAA	1 cut(s)	132
SatI	GCNGC	3 cut(s)	72, 165, 199
Sau3AI	GATC	1 cut(s)	225
ScaI	AGTACT	1 cut(s)	66
SchI	GAGTC	1 cut(s)	81
SetI	ASST	3 cut(s)	34, 99, 144
SfaNI	GCATC	1 cut(s)	70
Sse9I	AATT	1 cut(s)	101
SsiI	CCGC	1 cut(s)	198
TaiI	ACGT	1 cut(s)	144
TaqI	TCGA	2 cut(s)	114, 127
TasI	AATT	1 cut(s)	101
TatI	WGTACW	1 cut(s)	64
TauI	GCSGC	1 cut(s)	201
TfiI	GAWTC	1 cut(s)	157
Tru1I	TTAA	1 cut(s)	132
Tru9I	TTAA	1 cut(s)	132
TseI	GCWGC	2 cut(s)	71, 164
ZraI	GACGTC	1 cut(s)	142
ZrmI	AGTACT	1 cut(s)	66

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.