Rroxscaffold_17G00435390

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000017
OG0000385
Physical Location & Seq
Reverse (-)
15330 .. 39273
23944 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_17G00435390.1

Sequence Viewer

Length: 1695 bp
ATGGTGATGGCAAATGACGACGAGACAAAGTCCAAGGTCCTAGACTTGGAGGAGGAGATCCAGGTTCTGAGGAGGACGAGGAGCAATGAGTGCTTGAATGTCTCTAAGGTCAAAGTGCCGGAACCAAAGGCATTTCATGGTGTTCGGAATGCGAAGGAGTTGGAAAACTTTCTATGGGACATGGAGCAATATTTCGGTGCTGCCCATATTCCAATTCAAGAGCAAGTGTCCATTACGAGCATGTACCTAGCAGGAGACGCCAAACTGTGGTGGCGGACTCGGGTGCAGGACGAGGGCAGGCCAAGAATCAACGAGTGGGAGTCGATGAAAAAGGAATTGAAGGTTCAGTTCCTTCCTTGCAATGCATCGTGGCTTGCAAGGGAATCTCTTCGGAAGCTGCGACACACGAACTCGGTGAGGGAGTTTGTAAAGCAGTTCAGTTCCTTGATGTTGGATGTGTCCAACATGTCAGAGGAAGATAAGCTGTTCAACTTCATGTCGGGATTGCAGCCTTGGGCGCAAAAGGAGTTGCGTAGGCAAGGGGTAAGGGACTTACCAAGTGCAATGACAGCTGCTGACGGCTTGGTGGATTTTGATCTGGATCAGGCTCCTTCAAACGTAGGCAAGGGTGCCTCTTCCAAGAGTGGGAAGAAGTTTGAGAGGAAGGAGAAAGAGAGTGGAAAGGGTTCGAGTTCAAGGAATCAACCCCAAGACAGAAAAAAGTGGAGTTCTGGTTGCTTTATTTGCAAGGGTCCTCATCTAGCACGAGAGTGTCCTAAGAAGGAGCAGTTGAGTGCATTGGTTGCCAATGATTCGGGTGATGATGACTCAGGAGGTGCTTATCTTGGGGGCATGAGATTATTGACTGCCATGACATTGGTCAAGGACAGTTCCAAGGAGGAATTGATGTTCTTGCCAATCAAGGTCGATGGCAACGATGTGCTGGCGATGTTGGACACAGGTGCAACAAGCAGCTTTGTCGCTATGGGAGTGGCAAAGAAACTGGGTTTAAAGATGGTTCCTGATTCGAGCAAGCTGAAAGCGGTGAACTCGGAGGCCAAACCAGTCCATGGAAGTGCAAGAGTGTGCTTGAAGGCTGGAGATTGGGAGGGCGAGTGCTGTTTGTCGGCTGTGCCACTGGATGGTTATGATCTAATCCTTGGTATCGACTTCTTTAAGAAGGCGAAAGTAGGGCTGGTGCCTTACTTGGGAGGGATTCTCATTATGGATGGGAAGTCCCCGTGCTTTGTGAAAGCAAGATTTGCGAGTCAACTGCTGGACCGCAAAGGAAATCAACTTGAGGGTGATGCCCGTCAGTCAATGGCAGGAGTGAAGATTGGGGAAACGAGTCTGGATGCAGCCTTGATGAAGATCAAGCCAGATAAAATGTTCAAAGTACCCAAAGATGATAATGTGGCGCTTCCTCCTTGTCGTATGAAAGGCCACATGATGGAGCTGGAAGCAAGTGCAGGACCTCATGCACAAGCGCTTCATCAGGTGCCAACGAAGATAGTGAAGCAGCGGAGACACTATGGTGTGTTGCAAGGTGCAGGCTGCGGAGAGCTTTCCAATGCTCACTATGGTGCCAAGGTGTTGTTGCAGAGTAGGCAACAAGGTTTGAGTGATCATGGCGCAGGGCCAGCGTCGAAGGTGGTACTCAATGTTCCCAAAAGATGGGGAACGAATGCTCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Asp_protease_2 Chromo RVT_1 Retrotrans_gag gag-asp_proteas rve

Protein Analysis

564

Amino Acids

62.11

Weight (kDa)

9.1

Isoelectric Point (pI)

40.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ty3_capsid PF19259 41 - 192 3.6e-08 Ty3 transposon capsid-like protein
Retrotrans_gag PF03732 78 - 171 2.2e-17 Retrotransposon gag protein
gag-asp_proteas PF13975 306 - 394 1.1e-08 gag-polyprotein putative aspartyl protease
Asp_protease_2 PF13650 306 - 391 4.3e-07 Aspartyl protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000385)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g23713 FvH4_1g25744 FvH4_2g00261 FvH4_2g00262 FvH4_2g15681 FvH4_2g17851 FvH4_2g35550 FvH4_3g05280 FvH4_3g10531 FvH4_3g25910 FvH4_3g28953 FvH4_3g33371 FvH4_3g33536 FvH4_3g36090 FvH4_4g03471 FvH4_4g03480 FvH4_4g06701 FvH4_4g19351 FvH4_4g34281 FvH4_5g00040 FvH4_5g03811 FvH4_5g03812 FvH4_5g11822 FvH4_5g30921 FvH4_5g31701 FvH4_6g12161 FvH4_6g15222 FvH4_6g15223 FvH4_6g17701 FvH4_6g17710 FvH4_6g19301 FvH4_6g33011 FvH4_6g34501 FvH4_6g50161 FvH4_7g04111 FvH4_7g04120 FvH4_7g04121 FvH4_7g04122 FvH4_7g04123 FvH4_7g28231 FvH4_c7g00010
malus_domestica MD12G1084200.v1.1
prunus_persica Prupe.1G206200_v2.0.a1 Prupe.8G085600_v2.0.a1
pyrus_communis pycom01g11080 pycom02g20500 pycom09g18370 pycom12555g00210 pycom13g23120 pycom14g10590 pycom16g17620 pycom16g22750
rosa_chinensis RchiOBHm_Chr2g0137481 RchiOBHm_Chr6g0251961 RchiOBHm_Chr7g0185821
rosa_laevigata RLG00000005585 RLG00000010281 RLG00000010912 RLG00000030342 RLG00000034281
rosa_multiflora Rmu_sc0000096.1_g000010 Rmu_sc0002481.1_g000045 Rmu_sc0003598.1_g000009 Rmu_sc0003863.1_g000019 Rmu_sc0003973.1_g000002 Rmu_sc0004823.1_g000050 Rmu_sc0005621.1_g000007 Rmu_sc0006537.1_g000030 Rmu_sc0006608.1_g000014 Rmu_sc0008506.1_g000007 Rmu_sc0014428.1_g000001 Rmu_sc0035437.1_g000001 Rmu_ssc0000396.1_g000022
rosa_roxburghii Rroxscaffold_175G00432300 Rroxscaffold_17G00435390 Rroxscaffold_27G00446590 Rroxscaffold_29G00441820 Rroxscaffold_31G00438110 Rroxscaffold_32G00442750 Rroxscaffold_33G00439810 Rroxscaffold_37G00445160 Rroxscaffold_4G00306500 Rroxscaffold_4G00327700 Rroxscaffold_4G00332630 Rroxscaffold_52G00439360 Rroxscaffold_63G00444420 Rroxscaffold_76G00448580 Rroxscaffold_7G00156270
rosa_rugosa Rorug03G0295200
rosa_samantha Rh1BG433700 Rh1CG115400 Rh2AG676300 Rh2CG341800 Rh2DG381400 Rh3BG370100 Rh3BG370200 Rh4AG441600 Rh4BG076500 Rh4BG107400 Rh5BG005600 Rh6BG010100 Rh7BG000200
rosa_wichuraiana Rw0G003820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 4 cut(s) 629, 1198, 1498, 1583
AccB7I CCANNNNNTGG 5 cut(s) 267, 1070, 1142, 1450, 1674
AciI CCGC 5 cut(s) 274, 1043, 1282, 1522, 1557
AclWI GGATC 2 cut(s) 52, 609
AcyI GRCGYC 1 cut(s) 258
AfaI GTAC 3 cut(s) 245, 1398, 1656
AfeI AGCGCT 1 cut(s) 1488
AfiI CCNNNNNNNGG 8 cut(s) 46, 267, 645, 1070, 1142, 1208, 1450, 1674
AflIII ACRYGT 1 cut(s) 465
AgsI TTSAA 8 cut(s) 97, 218, 340, 490, 615, 696, 1093, 1393
AjnI CCWGG 1 cut(s) 60
AleI CACNNNNGTG 3 cut(s) 769, 1533, 1581
AloI GAACNNNNNNTCC 3 cut(s) 893, 925, 1672
AluBI AGCT 7 cut(s) 397, 484, 572, 975, 1036, 1456, 1564
AluI AGCT 7 cut(s) 397, 484, 572, 975, 1036, 1456, 1564
Alw26I GTCTC 4 cut(s) 17, 106, 249, 1519
AlwI GGATC 2 cut(s) 52, 609
AlwNI CAGNNNCTG 2 cut(s) 67, 575
Ama87I CYCGRG 1 cut(s) 279
Aor51HI AGCGCT 1 cut(s) 1488
AoxI GGCC 4 cut(s) 299, 1056, 1441, 1637
ApeKI GCWGC 8 cut(s) 200, 397, 508, 572, 972, 1358, 1519, 1554
Asp700I GAANNNNTTC 3 cut(s) 168, 387, 685
AspLEI GCGC 4 cut(s) 520, 1420, 1489, 1634
AspS9I GGNCC 5 cut(s) 37, 752, 1279, 1472, 1637
AsuHPI GGTGA 5 cut(s) 16, 427, 830, 1057, 1316
AvaI CYCGRG 1 cut(s) 279
AvaII GGWCC 4 cut(s) 37, 752, 1279, 1472
BanI GGYRCC 4 cut(s) 629, 1198, 1498, 1583
BauI CACGAG 1 cut(s) 765
BbvI GCAGC 8 cut(s) 187, 384, 520, 559, 984, 1370, 1531, 1541
BccI CCATC 6 cut(s) 923, 1009, 1136, 1223, 1444, 1668
BceAI ACGGC 1 cut(s) 595
BcgI CGANNNNNNTGC 4 cut(s) 961, 995, 1255, 1289
BciT130I CCWGG 1 cut(s) 62
BclI TGATCA 1 cut(s) 1624
BcoDI GTCTC 4 cut(s) 17, 106, 249, 1519
BfaI CTAG 3 cut(s) 41, 248, 761
BfoI RGCGCY 2 cut(s) 1421, 1490
BisI GCNGC 8 cut(s) 201, 398, 509, 573, 973, 1359, 1520, 1555
BlsI GCNGC 8 cut(s) 202, 399, 510, 574, 974, 1360, 1521, 1556
Bme1390I CCNGG 1 cut(s) 62
Bme18I GGWCC 4 cut(s) 37, 752, 1279, 1472
BmeT110I CYCGRG 1 cut(s) 279
BmgT120I GGNCC 5 cut(s) 37, 752, 1279, 1472, 1637
BmiI GGNNCC 8 cut(s) 123, 609, 631, 753, 1020, 1200, 1500, 1585
BmrFI CCNGG 1 cut(s) 62
BmrI ACTGGG 1 cut(s) 1013
BmsI GCATC 3 cut(s) 374, 1297, 1345
BmuI ACTGGG 1 cut(s) 1013
BoxI GACNNNNGTC 1 cut(s) 878
BplI GAGNNNNNCTC 2 cut(s) 1203, 1235
BpmI CTGGAG 1 cut(s) 1119
BpuEI CTTGAG 1 cut(s) 1319
BsaBI GATNNNNATC 3 cut(s) 594, 600, 1370
BsaHI GRCGYC 1 cut(s) 258
BsaJI CCNNGG 6 cut(s) 33, 512, 894, 1069, 1159, 1587
BsaXI ACNNNNNCTCC 5 cut(s) 718, 748, 1100, 1130, 1672
Bsc4I CCNNNNNNNGG 8 cut(s) 46, 267, 645, 1070, 1142, 1208, 1450, 1674
Bse1I ACTGG 3 cut(s) 1008, 1064, 1143
Bse3DI GCAATG 3 cut(s) 91, 367, 570
Bse8I GATNNNNATC 3 cut(s) 594, 600, 1370
BseBI CCWGG 1 cut(s) 62
BseDI CCNNGG 6 cut(s) 33, 512, 894, 1069, 1159, 1587
BseGI GGATG 4 cut(s) 460, 1147, 1234, 1360
BseJI GATNNNNATC 3 cut(s) 594, 600, 1370
BseLI CCNNNNNNNGG 8 cut(s) 46, 267, 645, 1070, 1142, 1208, 1450, 1674
BseMI GCAATG 3 cut(s) 91, 367, 570
BseMII CTCAG 2 cut(s) 59, 843
BseNI ACTGG 3 cut(s) 1008, 1064, 1143
BseRI GAGGAG 4 cut(s) 65, 68, 85, 94
BseXI GCAGC 8 cut(s) 187, 384, 520, 559, 984, 1370, 1531, 1541
BsgI GTGCAG 3 cut(s) 305, 1488, 1569
BshFI GGCC 4 cut(s) 301, 1058, 1443, 1639
BshNI GGYRCC 4 cut(s) 629, 1198, 1498, 1583
BsiHKCI CYCGRG 1 cut(s) 279
BsiSI CCGG 1 cut(s) 119
BslFI GGGAC 3 cut(s) 191, 563, 1222
BslI CCNNNNNNNGG 8 cut(s) 46, 267, 645, 1070, 1142, 1208, 1450, 1674
BsmAI GTCTC 4 cut(s) 17, 106, 249, 1519
BsmBI CGTCTC 1 cut(s) 249
BsmFI GGGAC 3 cut(s) 191, 563, 1222
BsmI GAATGC 2 cut(s) 154, 1690
BsnI GGCC 4 cut(s) 301, 1058, 1443, 1639
BsoBI CYCGRG 1 cut(s) 279
Bsp143I GATC 6 cut(s) 57, 595, 601, 1150, 1371, 1624
Bsp19I CCATGG 1 cut(s) 1069
BspACI CCGC 5 cut(s) 274, 1043, 1282, 1522, 1557
BspANI GGCC 4 cut(s) 301, 1058, 1443, 1639
BspCNI CTCAG 2 cut(s) 60, 842
BspLI GGNNCC 8 cut(s) 123, 609, 631, 753, 1020, 1200, 1500, 1585
BspPI GGATC 2 cut(s) 52, 609
BspT107I GGYRCC 4 cut(s) 629, 1198, 1498, 1583
BsrDI GCAATG 3 cut(s) 91, 367, 570
BsrI ACTGG 3 cut(s) 1008, 1064, 1143
BssECI CCNNGG 6 cut(s) 33, 512, 894, 1069, 1159, 1587
BssMI GATC 6 cut(s) 57, 595, 601, 1150, 1371, 1624
BssNI GRCGYC 1 cut(s) 258
BssSI CACGAG 1 cut(s) 765
BssT1I CCWWGG 6 cut(s) 33, 512, 894, 1069, 1159, 1587
Bst2BI CACGAG 1 cut(s) 765
Bst2UI CCWGG 1 cut(s) 62
Bst4CI ACNGT 2 cut(s) 267, 890
Bst6I CTCTTC 2 cut(s) 393, 640
BstACI GRCGYC 1 cut(s) 258
BstAPI GCANNNNNTGC 3 cut(s) 90, 803, 1262
BstC8I GCNNGC 6 cut(s) 299, 375, 945, 1034, 1552, 1641
BstDEI CTNAG 4 cut(s) 68, 105, 777, 829
BstDSI CCRYGG 1 cut(s) 1069
BstF5I GGATG 4 cut(s) 460, 1147, 1234, 1360
BstH2I RGCGCY 2 cut(s) 1421, 1490
BstHHI GCGC 4 cut(s) 520, 1420, 1489, 1634
BstKTI GATC 6 cut(s) 60, 598, 604, 1153, 1374, 1627
BstMAI GTCTC 4 cut(s) 17, 106, 249, 1519
BstMBI GATC 6 cut(s) 57, 595, 601, 1150, 1371, 1624
BstMWI GCNNNNNNNGC 9 cut(s) 90, 257, 517, 569, 744, 803, 1262, 1606, 1640
BstNI CCWGG 1 cut(s) 62
BstNSI RCATGY 2 cut(s) 244, 469
BstPAI GACNNNNGTC 1 cut(s) 878
BstSCI CCNGG 1 cut(s) 60
BstV1I GCAGC 8 cut(s) 187, 384, 520, 559, 984, 1370, 1531, 1541
BstX2I RGATCY 1 cut(s) 57
BstXI CCANNNNNNTGG 1 cut(s) 877
BstYI RGATCY 1 cut(s) 57
BsuRI GGCC 4 cut(s) 301, 1058, 1443, 1639
BtgI CCRYGG 1 cut(s) 1069
BtgZI GCGATG 1 cut(s) 962
BtsCI GGATG 4 cut(s) 460, 1147, 1234, 1360
BtsIMutI CAGTG 1 cut(s) 1136
Cac8I GCNNGC 6 cut(s) 299, 375, 945, 1034, 1552, 1641
CaiI CAGNNNCTG 2 cut(s) 67, 575
CfoI GCGC 4 cut(s) 520, 1420, 1489, 1634
Cfr13I GGNCC 5 cut(s) 37, 752, 1279, 1472, 1637
CseI GACGC 2 cut(s) 266, 1632
Csp6I GTAC 3 cut(s) 244, 1397, 1655
CviQI GTAC 3 cut(s) 244, 1397, 1655
DdeI CTNAG 4 cut(s) 68, 105, 777, 829
DpnI GATC 6 cut(s) 59, 597, 603, 1152, 1373, 1626
DpnII GATC 6 cut(s) 57, 595, 601, 1150, 1371, 1624
DraI TTTAAA 1 cut(s) 1011
Eam1104I CTCTTC 2 cut(s) 393, 640
EarI CTCTTC 2 cut(s) 393, 640
EciI GGCGGA 1 cut(s) 289
Eco130I CCWWGG 6 cut(s) 33, 512, 894, 1069, 1159, 1587
Eco47I GGWCC 4 cut(s) 37, 752, 1279, 1472
Eco47III AGCGCT 1 cut(s) 1488
Eco88I CYCGRG 1 cut(s) 279
EcoO109I RGGNCCY 3 cut(s) 37, 752, 1472
EcoRII CCWGG 1 cut(s) 60
EcoT14I CCWWGG 6 cut(s) 33, 512, 894, 1069, 1159, 1587
EcoT22I ATGCAT 1 cut(s) 367
ErhI CCWWGG 6 cut(s) 33, 512, 894, 1069, 1159, 1587
Esp3I CGTCTC 1 cut(s) 249
FaqI GGGAC 3 cut(s) 191, 563, 1222
FbaI TGATCA 1 cut(s) 1624
Fnu4HI GCNGC 8 cut(s) 201, 398, 509, 573, 973, 1359, 1520, 1555
FokI GGATG 4 cut(s) 467, 1154, 1241, 1367
Fsp4HI GCNGC 8 cut(s) 201, 398, 509, 573, 973, 1359, 1520, 1555
FspBI CTAG 3 cut(s) 41, 248, 761
GlaI GCGC 4 cut(s) 519, 1419, 1488, 1633
GluI GCNGC 8 cut(s) 201, 398, 509, 573, 973, 1359, 1520, 1555
GsuI CTGGAG 1 cut(s) 1119
HaeII RGCGCY 2 cut(s) 1421, 1490
HaeIII GGCC 4 cut(s) 301, 1058, 1443, 1639
HapII CCGG 1 cut(s) 119
HgaI GACGC 2 cut(s) 266, 1632
HhaI GCGC 4 cut(s) 520, 1420, 1489, 1634
Hin1I GRCGYC 1 cut(s) 258
Hin6I GCGC 4 cut(s) 518, 1418, 1487, 1632
HinP1I GCGC 4 cut(s) 518, 1418, 1487, 1632
HincII GTYRAC 1 cut(s) 1271
HindII GTYRAC 1 cut(s) 1271
HpaII CCGG 1 cut(s) 119
HphI GGTGA 5 cut(s) 16, 427, 830, 1057, 1316
Hpy166II GTNNAC 2 cut(s) 1048, 1271
Hpy188I TCNGA 5 cut(s) 69, 147, 393, 472, 1054
Hpy188III TCNNGA 6 cut(s) 218, 501, 599, 831, 1022, 1352
Hpy8I GTNNAC 2 cut(s) 1048, 1271
Hpy99I CGWCG 2 cut(s) 23, 1648
HpyAV CCTTC 9 cut(s) 148, 334, 362, 621, 658, 775, 1087, 1174, 1642
HpyCH4III ACNGT 2 cut(s) 267, 890
HpyCH4IV ACGT 1 cut(s) 618
HpyF10VI GCNNNNNNNGC 9 cut(s) 90, 257, 517, 569, 744, 803, 1262, 1606, 1640
HpyF3I CTNAG 4 cut(s) 68, 105, 777, 829
HpySE526I ACGT 1 cut(s) 618
Hsp92I GRCGYC 1 cut(s) 258
HspAI GCGC 4 cut(s) 518, 1418, 1487, 1632
Ksp22I TGATCA 1 cut(s) 1624
Kzo9I GATC 6 cut(s) 57, 595, 601, 1150, 1371, 1624
LmnI GCTCC 6 cut(s) 81, 184, 613, 784, 1453, 1693
Lsp1109I GCAGC 8 cut(s) 187, 384, 520, 559, 984, 1370, 1531, 1541
LweI GCATC 3 cut(s) 374, 1297, 1345
MaeI CTAG 3 cut(s) 41, 248, 761
MaeII ACGT 1 cut(s) 618
MalI GATC 6 cut(s) 59, 597, 603, 1152, 1373, 1626
MboI GATC 6 cut(s) 57, 595, 601, 1150, 1371, 1624
MboII GAAGA 7 cut(s) 380, 488, 627, 661, 1345, 1381, 1519
MflI RGATCY 1 cut(s) 57
MluCI AATT 3 cut(s) 213, 335, 902
MlyI GAGTC 5 cut(s) 271, 329, 821, 1276, 1357
MmeI TCCRAC 4 cut(s) 141, 432, 486, 933
Mph1103I ATGCAT 1 cut(s) 367
MroXI GAANNNNTTC 3 cut(s) 168, 387, 685
MseI TTAA 2 cut(s) 1010, 1176
MslI CAYNNNNRTG 4 cut(s) 769, 1074, 1533, 1581
MspA1I CMGCKG 2 cut(s) 572, 1522
MspI CCGG 1 cut(s) 119
MspR9I CCNGG 1 cut(s) 62
Mva1269I GAATGC 2 cut(s) 154, 1690
MvaI CCWGG 1 cut(s) 62
MwoI GCNNNNNNNGC 9 cut(s) 90, 257, 517, 569, 744, 803, 1262, 1606, 1640
NcoI CCATGG 1 cut(s) 1069
NdeII GATC 6 cut(s) 57, 595, 601, 1150, 1371, 1624
NlaIV GGNNCC 8 cut(s) 123, 609, 631, 753, 1020, 1200, 1500, 1585
NsiI ATGCAT 1 cut(s) 367
NspI RCATGY 2 cut(s) 244, 469
OliI CACNNNNGTG 3 cut(s) 769, 1533, 1581
PciI ACATGT 1 cut(s) 465
PcsI WCGNNNNNNNCGW 2 cut(s) 397, 933
PctI GAATGC 2 cut(s) 154, 1690
PdmI GAANNNNTTC 3 cut(s) 168, 387, 685
PfeI GAWTC 6 cut(s) 306, 383, 700, 812, 1025, 1216
PflFI GACNNNGTC 1 cut(s) 28
PflMI CCANNNNNTGG 5 cut(s) 267, 1070, 1142, 1450, 1674
PkrI GCNGC 8 cut(s) 202, 399, 510, 574, 974, 1360, 1521, 1556
PleI GAGTC 5 cut(s) 271, 328, 821, 1275, 1356
PpsI GAGTC 5 cut(s) 271, 328, 821, 1275, 1356
PpuMI RGGWCCY 3 cut(s) 37, 752, 1472
PscI ACATGT 1 cut(s) 465
PshAI GACNNNNGTC 1 cut(s) 878
Psp5II RGGWCCY 3 cut(s) 37, 752, 1472
Psp6I CCWGG 1 cut(s) 60
PspGI CCWGG 1 cut(s) 60
PspN4I GGNNCC 8 cut(s) 123, 609, 631, 753, 1020, 1200, 1500, 1585
PspPI GGNCC 5 cut(s) 37, 752, 1279, 1472, 1637
PspPPI RGGWCCY 3 cut(s) 37, 752, 1472
PsrI GAACNNNNNNTAC 2 cut(s) 1647, 1679
PstNI CAGNNNCTG 2 cut(s) 67, 575
PsuI RGATCY 1 cut(s) 57
PsyI GACNNNGTC 1 cut(s) 28
PvuII CAGCTG 1 cut(s) 572
RsaI GTAC 3 cut(s) 245, 1398, 1656
RsaNI GTAC 3 cut(s) 244, 1397, 1655
RseI CAYNNNNRTG 4 cut(s) 769, 1074, 1533, 1581
SaqAI TTAA 2 cut(s) 1010, 1176
SatI GCNGC 8 cut(s) 201, 398, 509, 573, 973, 1359, 1520, 1555
Sau3AI GATC 6 cut(s) 57, 595, 601, 1150, 1371, 1624
Sau96I GGNCC 5 cut(s) 37, 752, 1279, 1472, 1637
SchI GAGTC 5 cut(s) 271, 329, 821, 1276, 1357
ScrFI CCNGG 1 cut(s) 62
SfaNI GCATC 3 cut(s) 374, 1297, 1345
SinI GGWCC 4 cut(s) 37, 752, 1279, 1472
SmiMI CAYNNNNRTG 4 cut(s) 769, 1074, 1533, 1581
SmlI CTYRAG 1 cut(s) 1298
SmoI CTYRAG 1 cut(s) 1298
Sse9I AATT 3 cut(s) 213, 335, 902
SsiI CCGC 5 cut(s) 274, 1043, 1282, 1522, 1557
SspI AATATT 1 cut(s) 191
SspMI CTAG 3 cut(s) 41, 248, 761
StyD4I CCNGG 1 cut(s) 60
StyI CCWWGG 6 cut(s) 33, 512, 894, 1069, 1159, 1587
TaaI ACNGT 2 cut(s) 267, 890
TaiI ACGT 1 cut(s) 621
TaqI TCGA 6 cut(s) 323, 689, 927, 1028, 1167, 1646
TasI AATT 3 cut(s) 213, 335, 902
TfiI GAWTC 6 cut(s) 306, 383, 700, 812, 1025, 1216
Tru1I TTAA 2 cut(s) 1010, 1176
Tru9I TTAA 2 cut(s) 1010, 1176
TscAI CASTG 1 cut(s) 1143
TseI GCWGC 8 cut(s) 200, 397, 508, 572, 972, 1358, 1519, 1554
TspDTI ATGAA 6 cut(s) 125, 341, 484, 1382, 1451, 1481
TspRI CASTG 1 cut(s) 1143
Tth111I GACNNNGTC 1 cut(s) 28
Van91I CCANNNNNTGG 5 cut(s) 267, 1070, 1142, 1450, 1674
VpaK11BI GGWCC 4 cut(s) 37, 752, 1279, 1472
XceI RCATGY 2 cut(s) 244, 469
XmnI GAANNNNTTC 3 cut(s) 168, 387, 685
XspI CTAG 3 cut(s) 41, 248, 761
Zsp2I ATGCAT 1 cut(s) 367
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.