Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006608.1

Orthogroup ID

OG0000385

Physical Location & Seq

Genomic Coordinates Reverse (-)

71150 .. 71647

Gene Structure 498 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006608.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

atgacatgcaagatgacaaaccaacaaagattcgattggtatgaccaacaactcggagaacttgcgggagtgcccgacaagttgattgatatcactaatgtggtggaccgcgtcgacctagatgggttagcggcgcagatgagagaggtggagagcctaaaggaccgagttgtggcccataaaaaatgtaaagctcaaggaagtggaagggaaagaaatgaggaagaaactcccgttccgaatgagcaaatgggggcaatgagtgatgcccttgatacactcaaggtgacagtggacaatatggaaaaagatgtccgagccaccatagatgctttcaggaatgagctaatggagttgaataccaagctcaacctggccatccgggcgatgggaaaccaacctctgacagactacaggaaggtgaagctaccggaacctcaagcttttggaggggcgcgagatgccaaggagcttgagaattacttatttgatatgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009628 GO:0009651 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0097159 GO:0140096 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 map04016 map04075

Pfam Domains

Protein Families

Pkinase

Protein Analysis

165

Amino Acids

18.72

Weight (kDa)

4.86

Isoelectric Point (pI)

21.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000385)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g23713 FvH4_1g25744 FvH4_2g00261 FvH4_2g00262 FvH4_2g15681 FvH4_2g17851 FvH4_2g35550 FvH4_3g05280 FvH4_3g10531 FvH4_3g25910 FvH4_3g28953 FvH4_3g33371 FvH4_3g33536 FvH4_3g36090 FvH4_4g03471 FvH4_4g03480 FvH4_4g06701 FvH4_4g19351 FvH4_4g34281 FvH4_5g00040 FvH4_5g03811 FvH4_5g03812 FvH4_5g11822 FvH4_5g30921 FvH4_5g31701 FvH4_6g12161 FvH4_6g15222 FvH4_6g15223 FvH4_6g17701 FvH4_6g17710 FvH4_6g19301 FvH4_6g33011 FvH4_6g34501 FvH4_6g50161 FvH4_7g04111 FvH4_7g04120 FvH4_7g04121 FvH4_7g04122 FvH4_7g04123 FvH4_7g28231 FvH4_c7g00010
malus_domestica	MD12G1084200.v1.1
prunus_persica	Prupe.1G206200_v2.0.a1 Prupe.8G085600_v2.0.a1
pyrus_communis	pycom01g11080 pycom02g20500 pycom09g18370 pycom12555g00210 pycom13g23120 pycom14g10590 pycom16g17620 pycom16g22750
rosa_chinensis	RchiOBHm_Chr2g0137481 RchiOBHm_Chr6g0251961 RchiOBHm_Chr7g0185821
rosa_laevigata	RLG00000005585 RLG00000010281 RLG00000010912 RLG00000030342 RLG00000034281
rosa_multiflora	Rmu_sc0000096.1_g000010 Rmu_sc0002481.1_g000045 Rmu_sc0003598.1_g000009 Rmu_sc0003863.1_g000019 Rmu_sc0003973.1_g000002 Rmu_sc0004823.1_g000050 Rmu_sc0005621.1_g000007 Rmu_sc0006537.1_g000030 Rmu_sc0006608.1_g000014 Rmu_sc0008506.1_g000007 Rmu_sc0014428.1_g000001 Rmu_sc0035437.1_g000001 Rmu_ssc0000396.1_g000022
rosa_roxburghii	Rroxscaffold_175G00432300 Rroxscaffold_17G00435390 Rroxscaffold_27G00446590 Rroxscaffold_29G00441820 Rroxscaffold_31G00438110 Rroxscaffold_32G00442750 Rroxscaffold_33G00439810 Rroxscaffold_37G00445160 Rroxscaffold_4G00306500 Rroxscaffold_4G00327700 Rroxscaffold_4G00332630 Rroxscaffold_52G00439360 Rroxscaffold_63G00444420 Rroxscaffold_76G00448580 Rroxscaffold_7G00156270
rosa_rugosa	Rorug03G0295200
rosa_samantha	Rh1BG433700 Rh1CG115400 Rh2AG676300 Rh2CG341800 Rh2DG381400 Rh3BG370100 Rh3BG370200 Rh4AG441600 Rh4BG076500 Rh4BG107400 Rh5BG005600 Rh6BG010100 Rh7BG000200
rosa_wichuraiana	Rw0G003820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	114
AccII	CGCG	2 cut(s)	111, 457
AciI	CCGC	3 cut(s)	65, 109, 131
AcoI	YGGCCR	1 cut(s)	375
AfiI	CCNNNNNNNGG	2 cut(s)	172, 388
AgsI	TTSAA	1 cut(s)	358
AjnI	CCWGG	1 cut(s)	372
AleI	CACNNNNGTG	1 cut(s)	98
AluBI	AGCT	6 cut(s)	194, 346, 367, 427, 443, 472
AluI	AGCT	6 cut(s)	194, 346, 367, 427, 443, 472
AoxI	GGCC	2 cut(s)	174, 375
AspLEI	GCGC	2 cut(s)	136, 457
AspS9I	GGNCC	3 cut(s)	106, 163, 175
AsuC2I	CCSGG	1 cut(s)	383
AsuHPI	GGTGA	2 cut(s)	298, 433
AvaII	GGWCC	2 cut(s)	106, 163
BaeGI	GKGCMC	1 cut(s)	75
BalI	TGGCCA	1 cut(s)	377
BccI	CCATC	3 cut(s)	116, 382, 386
BciT130I	CCWGG	1 cut(s)	374
BcnI	CCSGG	1 cut(s)	383
BfaI	CTAG	1 cut(s)	119
BfmI	CTRYAG	1 cut(s)	412
BglI	GCCNNNNNGGC	1 cut(s)	383
BisI	GCNGC	1 cut(s)	132
BlsI	GCNGC	1 cut(s)	133
Bme1390I	CCNGG	2 cut(s)	374, 383
Bme18I	GGWCC	2 cut(s)	106, 163
BmgT120I	GGNCC	3 cut(s)	106, 163, 175
BmiI	GGNNCC	1 cut(s)	435
BmrFI	CCNGG	2 cut(s)	374, 383
BmsI	GCATC	3 cut(s)	256, 319, 451
BpuEI	CTTGAG	4 cut(s)	180, 266, 423, 494
BpuMI	CCSGG	1 cut(s)	383
BsaBI	GATNNNNATC	1 cut(s)	89
BsaJI	CCNNGG	1 cut(s)	465
BsaWI	WCCGGW	1 cut(s)	430
Bsc4I	CCNNNNNNNGG	2 cut(s)	172, 388
Bse3DI	GCAATG	1 cut(s)	264
Bse8I	GATNNNNATC	1 cut(s)	89
BseBI	CCWGG	1 cut(s)	374
BseDI	CCNNGG	1 cut(s)	465
BseGI	GGATG	1 cut(s)	378
BseJI	GATNNNNATC	1 cut(s)	89
BseLI	CCNNNNNNNGG	2 cut(s)	172, 388
BseMI	GCAATG	1 cut(s)	264
BseSI	GKGCMC	1 cut(s)	75
Bsh1236I	CGCG	2 cut(s)	111, 457
BshFI	GGCC	2 cut(s)	176, 377
BsiSI	CCGG	2 cut(s)	382, 431
BslI	CCNNNNNNNGG	2 cut(s)	172, 388
BsnI	GGCC	2 cut(s)	176, 377
Bsp1286I	GDGCHC	1 cut(s)	75
BspACI	CCGC	3 cut(s)	65, 109, 131
BspANI	GGCC	2 cut(s)	176, 377
BspFNI	CGCG	2 cut(s)	111, 457
BspLI	GGNNCC	1 cut(s)	435
BsrDI	GCAATG	1 cut(s)	264
BssECI	CCNNGG	1 cut(s)	465
BssT1I	CCWWGG	1 cut(s)	465
Bst2UI	CCWGG	1 cut(s)	374
Bst4CI	ACNGT	1 cut(s)	292
BstF5I	GGATG	1 cut(s)	378
BstFNI	CGCG	2 cut(s)	111, 457
BstHHI	GCGC	2 cut(s)	136, 457
BstMWI	GCNNNNNNNGC	2 cut(s)	383, 461
BstNI	CCWGG	1 cut(s)	374
BstNSI	RCATGY	1 cut(s)	9
BstSCI	CCNGG	2 cut(s)	372, 381
BstSFI	CTRYAG	1 cut(s)	412
BstSLI	GKGCMC	1 cut(s)	75
BstUI	CGCG	2 cut(s)	111, 457
BsuRI	GGCC	2 cut(s)	176, 377
BtgZI	GCGATG	1 cut(s)	401
BtsCI	GGATG	1 cut(s)	378
BtsIMutI	CAGTG	1 cut(s)	297
CfoI	GCGC	2 cut(s)	136, 457
Cfr13I	GGNCC	3 cut(s)	106, 163, 175
CseI	GACGC	1 cut(s)	100
CviAII	CATG	1 cut(s)	6
EaeI	YGGCCR	1 cut(s)	375
Eco130I	CCWWGG	1 cut(s)	465
Eco32I	GATATC	1 cut(s)	91
Eco47I	GGWCC	2 cut(s)	106, 163
EcoRII	CCWGG	1 cut(s)	372
EcoRV	GATATC	1 cut(s)	91
EcoT14I	CCWWGG	1 cut(s)	465
ErhI	CCWWGG	1 cut(s)	465
FaeI	CATG	1 cut(s)	9
FaiI	YATR	6 cut(s)	7, 42, 180, 302, 326, 494
FatI	CATG	1 cut(s)	5
FauI	CCCGC	1 cut(s)	58
FblI	GTMKAC	1 cut(s)	114
Fnu4HI	GCNGC	1 cut(s)	132
FokI	GGATG	1 cut(s)	365
Fsp4HI	GCNGC	1 cut(s)	132
FspBI	CTAG	1 cut(s)	119
GlaI	GCGC	2 cut(s)	135, 456
GluI	GCNGC	1 cut(s)	132
HaeIII	GGCC	2 cut(s)	176, 377
HapII	CCGG	2 cut(s)	382, 431
HgaI	GACGC	1 cut(s)	100
HhaI	GCGC	2 cut(s)	136, 457
Hin1II	CATG	1 cut(s)	9
Hin6I	GCGC	2 cut(s)	134, 455
HinP1I	GCGC	2 cut(s)	134, 455
HincII	GTYRAC	1 cut(s)	115
HindII	GTYRAC	1 cut(s)	115
HindIII	AAGCTT	1 cut(s)	441
HinfI	GANTC	1 cut(s)	30
HpaII	CCGG	2 cut(s)	382, 431
HphI	GGTGA	2 cut(s)	298, 433
Hpy166II	GTNNAC	3 cut(s)	106, 115, 295
Hpy188I	TCNGA	4 cut(s)	56, 240, 317, 405
Hpy188III	TCNNGA	1 cut(s)	337
Hpy8I	GTNNAC	3 cut(s)	106, 115, 295
Hpy99I	CGWCG	1 cut(s)	116
HpyAV	CCTTC	2 cut(s)	201, 412
HpyCH4III	ACNGT	1 cut(s)	292
HpyCH4V	TGCA	1 cut(s)	9
HpyF10VI	GCNNNNNNNGC	2 cut(s)	383, 461
Hsp92II	CATG	1 cut(s)	9
HspAI	GCGC	2 cut(s)	134, 455
LmnI	GCTCC	1 cut(s)	469
LpnPI	CCDG	6 cut(s)	322, 359, 386, 395, 400, 444
LweI	GCATC	3 cut(s)	256, 319, 451
MaeI	CTAG	1 cut(s)	119
MaeIII	GTNAC	1 cut(s)	286
MboII	GAAGA	1 cut(s)	236
MhlI	GDGCHC	1 cut(s)	75
MlsI	TGGCCA	1 cut(s)	377
MluCI	AATT	1 cut(s)	478
MluNI	TGGCCA	1 cut(s)	377
MnlI	CCTC	5 cut(s)	139, 214, 411, 443, 447
Mox20I	TGGCCA	1 cut(s)	377
MscI	TGGCCA	1 cut(s)	377
MslI	CAYNNNNRTG	1 cut(s)	98
Msp20I	TGGCCA	1 cut(s)	377
MspI	CCGG	2 cut(s)	382, 431
MspR9I	CCNGG	2 cut(s)	374, 383
MvaI	CCWGG	1 cut(s)	374
MvnI	CGCG	2 cut(s)	111, 457
MwoI	GCNNNNNNNGC	2 cut(s)	383, 461
NciI	CCSGG	1 cut(s)	383
NlaIII	CATG	1 cut(s)	9
NlaIV	GGNNCC	1 cut(s)	435
NmuCI	GTSAC	1 cut(s)	286
NspI	RCATGY	1 cut(s)	9
OliI	CACNNNNGTG	1 cut(s)	98
PfeI	GAWTC	1 cut(s)	30
PflFI	GACNNNGTC	1 cut(s)	110
PkrI	GCNGC	1 cut(s)	133
Psp6I	CCWGG	1 cut(s)	372
PspGI	CCWGG	1 cut(s)	372
PspN4I	GGNNCC	1 cut(s)	435
PspPI	GGNCC	3 cut(s)	106, 163, 175
PsyI	GACNNNGTC	1 cut(s)	110
RseI	CAYNNNNRTG	1 cut(s)	98
SalI	GTCGAC	1 cut(s)	113
SatI	GCNGC	1 cut(s)	132
Sau96I	GGNCC	3 cut(s)	106, 163, 175
ScrFI	CCNGG	2 cut(s)	374, 383
SduI	GDGCHC	1 cut(s)	75
SfaNI	GCATC	3 cut(s)	256, 319, 451
SfcI	CTRYAG	1 cut(s)	412
SinI	GGWCC	2 cut(s)	106, 163
SmiMI	CAYNNNNRTG	1 cut(s)	98
SmlI	CTYRAG	4 cut(s)	195, 281, 438, 473
SmoI	CTYRAG	4 cut(s)	195, 281, 438, 473
Sse9I	AATT	1 cut(s)	478
SsiI	CCGC	3 cut(s)	65, 109, 131
SspMI	CTAG	1 cut(s)	119
StyD4I	CCNGG	2 cut(s)	372, 381
StyI	CCWWGG	1 cut(s)	465
TaaI	ACNGT	1 cut(s)	292
TaqI	TCGA	2 cut(s)	33, 114
TaqII	GACCGA	1 cut(s)	180
TasI	AATT	1 cut(s)	478
TauI	GCSGC	1 cut(s)	134
TfiI	GAWTC	1 cut(s)	30
TscAI	CASTG	1 cut(s)	297
TseFI	GTSAC	1 cut(s)	286
Tsp45I	GTSAC	1 cut(s)	286
TspRI	CASTG	1 cut(s)	297
Tth111I	GACNNNGTC	1 cut(s)	110
VpaK11BI	GGWCC	2 cut(s)	106, 163
XceI	RCATGY	1 cut(s)	9
XcmI	CCANNNNNNNNNTGG	2 cut(s)	370, 385
XmiI	GTMKAC	1 cut(s)	114
XspI	CTAG	1 cut(s)	119

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.