Rh4BG076500

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0000385
Physical Location & Seq
Reverse (-)
13493550 .. 13498512
4963 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG076500.1

Sequence Viewer

Length: 1302 bp
ATGGCTGGACTTTCCACCAAGGAGCGGATCGAGAGACTTGAAGGATTAGTTGGTGACCCAAGAGTAGATGGGACAGAATCCCTATCATTGGCAGTGCAGTGCACTCGAATGGGAGCAACCATCAAGGAGATGGACACTGCCTTCAAGAGATTCAAGGAGGAAGTCAACGGCAAGTTAACTTCCATTGTGGAAGAGCTAGCCGGCTTGATGAAAGCAGTGGAGGACAATGGCGAGGAGGCAAAATCCGAATTCAGAGACTTGGAGGGGGAGATCAACCTTCTCAAGAGGGTACTGAGTCAGGAGAGCCCGGCTCCTTCAAAGGTATCCGAGAACAAGAAGTTCAAGGATAATACACCTAAAACTGGGAAGAAATTTGATGGACAGAAGAAAGAGGGCTACACCAAGAAAAATCCAACCTCATCCCAAGACAAGGATAGAAAGTTTGGTGGATGTTTCCTGTGCGGAGGTCCACATCGCGCCAAGGAGTGCCCAAAGCGAGAGAAACTCACTGCTCTAGTAGCTGAGTTCAAGGAAGAAGGTAGCAGCAGTGAGCCTACTCCACGCTTATCACCGATGCGACTGCTCAATGCAATGACGACTGAGAAAGAGAGTCCTCGAGATGGACTCATGTATGCAACGGTGAAAGTGAATGGCACTGAGGCACTTGCGATGCTGGACACAGGAGCCACAAATAACTTTATTGATGAGAGAGAAGCCAGGAGGCTGGGATTGAAGGGAGTTTCAAATTCCAGCAGGCTGAAGGCTGTAAACTCGGAGGCCAAACCAATTCAGGGTACTGCAACTGTGACCTTGAAAGTTGGCGAATGGGAGGGCGAGTGCAGCCTCTTGATAGTCCCTCTGGATGACTATGATTTGGTTCTTGGAGTTGATTTCTTCAAGAAGGCGAAAGCAGCGGTGGCACCTTACTTGAATGGGATGTTCATTCATGACGAGAAGGCCCCATGCTTTGTTAATGCAACATTTACGGGTCACTTGCTGGATAGGAAACAAAAACAGACGGTGATGTCTGCCAAGCAAGTGAAGGCGGGATTGAAGAAAGGGGAACGAACTTTGCTGACTGACAGGGAGCAGCATCCAAGGAGGAAGCTGACTGACAGGGAGCAGCATCCAAGGAGGGAATCATGGGATGATGTTGGGCACGAGCCAACCTCTCTTGGGAAGCTGACTGACAGGGAGCAGCATCCAAGGAGGGAATCATGGCATGATGTTGGGCACGGGCCTGTCTCTCTTGGCAGCTGGCAAGGTGCAGCAGTCAAGAAGGGAATCCAAGGAAAGCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

433

Amino Acids

48.01

Weight (kDa)

9.03

Isoelectric Point (pI)

32.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVP_2 PF08284 196 - 307 3e-06 Retroviral aspartyl protease
Asp_protease PF09668 209 - 305 1.4e-06 Aspartyl protease
gag-asp_proteas PF13975 213 - 301 1.8e-12 gag-polyprotein putative aspartyl protease
Asp_protease_2 PF13650 213 - 298 1.5e-10 Aspartyl protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000385)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g23713 FvH4_1g25744 FvH4_2g00261 FvH4_2g00262 FvH4_2g15681 FvH4_2g17851 FvH4_2g35550 FvH4_3g05280 FvH4_3g10531 FvH4_3g25910 FvH4_3g28953 FvH4_3g33371 FvH4_3g33536 FvH4_3g36090 FvH4_4g03471 FvH4_4g03480 FvH4_4g06701 FvH4_4g19351 FvH4_4g34281 FvH4_5g00040 FvH4_5g03811 FvH4_5g03812 FvH4_5g11822 FvH4_5g30921 FvH4_5g31701 FvH4_6g12161 FvH4_6g15222 FvH4_6g15223 FvH4_6g17701 FvH4_6g17710 FvH4_6g19301 FvH4_6g33011 FvH4_6g34501 FvH4_6g50161 FvH4_7g04111 FvH4_7g04120 FvH4_7g04121 FvH4_7g04122 FvH4_7g04123 FvH4_7g28231 FvH4_c7g00010
malus_domestica MD12G1084200.v1.1
prunus_persica Prupe.1G206200_v2.0.a1 Prupe.8G085600_v2.0.a1
pyrus_communis pycom01g11080 pycom02g20500 pycom09g18370 pycom12555g00210 pycom13g23120 pycom14g10590 pycom16g17620 pycom16g22750
rosa_chinensis RchiOBHm_Chr2g0137481 RchiOBHm_Chr6g0251961 RchiOBHm_Chr7g0185821
rosa_laevigata RLG00000005585 RLG00000010281 RLG00000010912 RLG00000030342 RLG00000034281
rosa_multiflora Rmu_sc0000096.1_g000010 Rmu_sc0002481.1_g000045 Rmu_sc0003598.1_g000009 Rmu_sc0003863.1_g000019 Rmu_sc0003973.1_g000002 Rmu_sc0004823.1_g000050 Rmu_sc0005621.1_g000007 Rmu_sc0006537.1_g000030 Rmu_sc0006608.1_g000014 Rmu_sc0008506.1_g000007 Rmu_sc0014428.1_g000001 Rmu_sc0035437.1_g000001 Rmu_ssc0000396.1_g000022
rosa_roxburghii Rroxscaffold_175G00432300 Rroxscaffold_17G00435390 Rroxscaffold_27G00446590 Rroxscaffold_29G00441820 Rroxscaffold_31G00438110 Rroxscaffold_32G00442750 Rroxscaffold_33G00439810 Rroxscaffold_37G00445160 Rroxscaffold_4G00306500 Rroxscaffold_4G00327700 Rroxscaffold_4G00332630 Rroxscaffold_52G00439360 Rroxscaffold_63G00444420 Rroxscaffold_76G00448580 Rroxscaffold_7G00156270
rosa_rugosa Rorug03G0295200
rosa_samantha Rh1BG433700 Rh1CG115400 Rh2AG676300 Rh2CG341800 Rh2DG381400 Rh3BG370100 Rh3BG370200 Rh4AG441600 Rh4BG076500 Rh4BG107400 Rh5BG005600 Rh6BG010100 Rh7BG000200
rosa_wichuraiana Rw0G003820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1024
AccB1I GGYRCC 1 cut(s) 919
AccBSI CCGCTC 1 cut(s) 25
AccII CGCG 1 cut(s) 477
AciI CCGC 4 cut(s) 25, 462, 914, 1046
AclWI GGATC 1 cut(s) 35
AcsI RAATTY 3 cut(s) 248, 371, 745
AcuI CTGAAG 1 cut(s) 779
AfaI GTAC 2 cut(s) 291, 796
AfiI CCNNNNNNNGG 7 cut(s) 24, 88, 362, 430, 620, 791, 1176
AjnI CCWGG 1 cut(s) 716
AjuI GAANNNNNNNTTGG 2 cut(s) 33, 65
AluBI AGCT 5 cut(s) 196, 521, 1108, 1183, 1257
AluI AGCT 5 cut(s) 196, 521, 1108, 1183, 1257
Alw21I GWGCWC 1 cut(s) 104
Alw26I GTCTC 3 cut(s) 28, 249, 1249
Alw44I GTGCAC 1 cut(s) 100
AlwI GGATC 1 cut(s) 35
Ama87I CYCGRG 1 cut(s) 615
AoxI GGCC 3 cut(s) 777, 957, 1238
ApaLI GTGCAC 1 cut(s) 100
ApeKI GCWGC 8 cut(s) 543, 840, 911, 1090, 1123, 1198, 1254, 1268
ApoI RAATTY 3 cut(s) 248, 371, 745
AspLEI GCGC 1 cut(s) 479
AspS9I GGNCC 3 cut(s) 467, 958, 1238
AsuC2I CCSGG 1 cut(s) 308
AsuHPI GGTGA 4 cut(s) 65, 561, 652, 1033
AsuNHI GCTAGC 1 cut(s) 196
AvaI CYCGRG 1 cut(s) 615
AvaII GGWCC 1 cut(s) 467
BaeGI GKGCMC 4 cut(s) 104, 491, 1161, 1236
BanI GGYRCC 1 cut(s) 919
BanII GRGCYC 1 cut(s) 308
BauI CACGAG 1 cut(s) 1160
Bbv12I GWGCWC 1 cut(s) 104
BbvI GCAGC 8 cut(s) 555, 852, 923, 1102, 1135, 1210, 1266, 1280
BccI CCATC 5 cut(s) 62, 124, 128, 371, 614
BceAI ACGGC 1 cut(s) 184
BcgI CGANNNNNNTGC 4 cut(s) 86, 120, 562, 596
BciT130I CCWGG 1 cut(s) 718
BciVI GTATCC 1 cut(s) 334
BcnI CCSGG 1 cut(s) 308
BcoDI GTCTC 3 cut(s) 28, 249, 1249
BfaI CTAG 2 cut(s) 197, 515
BfuI GTATCC 1 cut(s) 334
BisI GCNGC 8 cut(s) 544, 841, 912, 1091, 1124, 1199, 1255, 1269
BlsI GCNGC 8 cut(s) 545, 842, 913, 1092, 1125, 1200, 1256, 1270
Bme1390I CCNGG 2 cut(s) 308, 718
Bme18I GGWCC 1 cut(s) 467
BmeT110I CYCGRG 1 cut(s) 615
BmgT120I GGNCC 3 cut(s) 467, 958, 1238
BmiI GGNNCC 4 cut(s) 312, 685, 921, 960
BmrFI CCNGG 2 cut(s) 308, 718
BmrI ACTGGG 1 cut(s) 372
BmsI GCATC 5 cut(s) 564, 660, 1102, 1135, 1210
BmtI GCTAGC 1 cut(s) 200
BmuI ACTGGG 1 cut(s) 372
BplI GAGNNNNNCTC 8 cut(s) 295, 327, 489, 521, 609, 641, 1154, 1186
BpuEI CTTGAG 1 cut(s) 266
BpuMI CCSGG 1 cut(s) 308
BsaJI CCNNGG 6 cut(s) 18, 480, 1097, 1130, 1205, 1288
BsaXI ACNNNNNCTCC 2 cut(s) 821, 851
Bsc4I CCNNNNNNNGG 7 cut(s) 24, 88, 362, 430, 620, 791, 1176
Bse118I RCCGGY 1 cut(s) 200
Bse1I ACTGG 1 cut(s) 367
Bse3DI GCAATG 1 cut(s) 597
BseBI CCWGG 1 cut(s) 718
BseDI CCNNGG 6 cut(s) 18, 480, 1097, 1130, 1205, 1288
BseGI GGATG 8 cut(s) 419, 455, 868, 942, 1093, 1126, 1153, 1201
BseLI CCNNNNNNNGG 7 cut(s) 24, 88, 362, 430, 620, 791, 1176
BseMI GCAATG 1 cut(s) 597
BseMII CTCAG 4 cut(s) 284, 513, 591, 648
BseNI ACTGG 1 cut(s) 367
BseRI GAGGAG 1 cut(s) 248
BseSI GKGCMC 4 cut(s) 104, 491, 1161, 1236
BseXI GCAGC 8 cut(s) 555, 852, 923, 1102, 1135, 1210, 1266, 1280
BseYI CCCAGC 1 cut(s) 724
BsgI GTGCAG 3 cut(s) 116, 859, 1287
Bsh1236I CGCG 1 cut(s) 477
BshFI GGCC 3 cut(s) 779, 959, 1240
BshNI GGYRCC 1 cut(s) 919
BsiHKAI GWGCWC 1 cut(s) 104
BsiHKCI CYCGRG 1 cut(s) 615
BsiSI CCGG 2 cut(s) 201, 308
BslFI GGGAC 2 cut(s) 85, 839
BslI CCNNNNNNNGG 7 cut(s) 24, 88, 362, 430, 620, 791, 1176
BsmAI GTCTC 3 cut(s) 28, 249, 1249
BsmFI GGGAC 2 cut(s) 85, 839
BsnI GGCC 3 cut(s) 779, 959, 1240
BsoBI CYCGRG 1 cut(s) 615
Bsp1286I GDGCHC 5 cut(s) 104, 308, 491, 1161, 1236
Bsp143I GATC 2 cut(s) 27, 270
BspACI CCGC 4 cut(s) 25, 462, 914, 1046
BspANI GGCC 3 cut(s) 779, 959, 1240
BspCNI CTCAG 4 cut(s) 285, 514, 592, 649
BspFNI CGCG 1 cut(s) 477
BspHI TCATGA 1 cut(s) 946
BspLI GGNNCC 4 cut(s) 312, 685, 921, 960
BspOI GCTAGC 1 cut(s) 200
BspPI GGATC 1 cut(s) 35
BspQI GCTCTTC 1 cut(s) 186
BspT107I GGYRCC 1 cut(s) 919
BsrBI CCGCTC 1 cut(s) 25
BsrDI GCAATG 1 cut(s) 597
BsrFI RCCGGY 1 cut(s) 200
BsrI ACTGG 1 cut(s) 367
BssAI RCCGGY 1 cut(s) 200
BssECI CCNNGG 6 cut(s) 18, 480, 1097, 1130, 1205, 1288
BssMI GATC 2 cut(s) 27, 270
BssSI CACGAG 1 cut(s) 1160
BssT1I CCWWGG 6 cut(s) 18, 480, 1097, 1130, 1205, 1288
Bst2BI CACGAG 1 cut(s) 1160
Bst2UI CCWGG 1 cut(s) 718
Bst4CI ACNGT 3 cut(s) 640, 805, 1021
Bst6I CTCTTC 1 cut(s) 186
BstC8I GCNNGC 4 cut(s) 198, 202, 755, 1259
BstDEI CTNAG 4 cut(s) 293, 522, 600, 657
BstEII GGTNACC 1 cut(s) 53
BstF5I GGATG 8 cut(s) 419, 455, 868, 942, 1093, 1126, 1153, 1201
BstFNI CGCG 1 cut(s) 477
BstHHI GCGC 1 cut(s) 479
BstKTI GATC 2 cut(s) 30, 273
BstMAI GTCTC 3 cut(s) 28, 249, 1249
BstMBI GATC 2 cut(s) 27, 270
BstMWI GCNNNNNNNGC 4 cut(s) 518, 840, 911, 917
BstNI CCWGG 1 cut(s) 718
BstPI GGTNACC 1 cut(s) 53
BstSCI CCNGG 2 cut(s) 306, 716
BstSLI GKGCMC 4 cut(s) 104, 491, 1161, 1236
BstUI CGCG 1 cut(s) 477
BstV1I GCAGC 8 cut(s) 555, 852, 923, 1102, 1135, 1210, 1266, 1280
BstXI CCANNNNNNTGG 1 cut(s) 724
BsuI GTATCC 1 cut(s) 334
BsuRI GGCC 3 cut(s) 779, 959, 1240
BtgZI GCGATG 2 cut(s) 458, 683
BtsCI GGATG 8 cut(s) 419, 455, 868, 942, 1093, 1126, 1153, 1201
BtsI GCAGTG 6 cut(s) 99, 104, 135, 222, 507, 553
BtsIMutI CAGTG 7 cut(s) 99, 104, 135, 222, 507, 553, 654
Cac8I GCNNGC 4 cut(s) 198, 202, 755, 1259
CciI TCATGA 1 cut(s) 946
CfoI GCGC 1 cut(s) 479
Cfr10I RCCGGY 1 cut(s) 200
Cfr13I GGNCC 3 cut(s) 467, 958, 1238
Csp6I GTAC 2 cut(s) 290, 795
CviAII CATG 6 cut(s) 628, 947, 963, 1143, 1218, 1223
CviQI GTAC 2 cut(s) 290, 795
DdeI CTNAG 4 cut(s) 293, 522, 600, 657
DpnI GATC 2 cut(s) 29, 272
DpnII GATC 2 cut(s) 27, 270
DrdI GACNNNNNNGTC 1 cut(s) 1024
DseDI GACNNNNNNGTC 1 cut(s) 1024
Eam1104I CTCTTC 1 cut(s) 186
EarI CTCTTC 1 cut(s) 186
Eco130I CCWWGG 6 cut(s) 18, 480, 1097, 1130, 1205, 1288
Eco24I GRGCYC 1 cut(s) 308
Eco47I GGWCC 1 cut(s) 467
Eco57I CTGAAG 1 cut(s) 779
Eco88I CYCGRG 1 cut(s) 615
Eco91I GGTNACC 1 cut(s) 53
EcoO109I RGGNCCY 1 cut(s) 958
EcoO65I GGTNACC 1 cut(s) 53
EcoRI GAATTC 1 cut(s) 248
EcoRII CCWGG 1 cut(s) 716
EcoT14I CCWWGG 6 cut(s) 18, 480, 1097, 1130, 1205, 1288
EcoT38I GRGCYC 1 cut(s) 308
ErhI CCWWGG 6 cut(s) 18, 480, 1097, 1130, 1205, 1288
FaeI CATG 6 cut(s) 631, 950, 966, 1146, 1221, 1226
FaiI YATR 8 cut(s) 629, 633, 870, 948, 964, 1144, 1219, 1224
FaqI GGGAC 2 cut(s) 85, 839
FatI CATG 6 cut(s) 627, 946, 962, 1142, 1217, 1222
FauI CCCGC 1 cut(s) 1039
Fnu4HI GCNGC 8 cut(s) 544, 841, 912, 1091, 1124, 1199, 1255, 1269
FokI GGATG 8 cut(s) 406, 462, 875, 949, 1080, 1113, 1160, 1188
FriOI GRGCYC 1 cut(s) 308
Fsp4HI GCNGC 8 cut(s) 544, 841, 912, 1091, 1124, 1199, 1255, 1269
FspBI CTAG 2 cut(s) 197, 515
GlaI GCGC 1 cut(s) 478
GluI GCNGC 8 cut(s) 544, 841, 912, 1091, 1124, 1199, 1255, 1269
GsaI CCCAGC 1 cut(s) 728
HaeIII GGCC 3 cut(s) 779, 959, 1240
HapII CCGG 2 cut(s) 201, 308
HhaI GCGC 1 cut(s) 479
Hin1II CATG 6 cut(s) 631, 950, 966, 1146, 1221, 1226
Hin6I GCGC 1 cut(s) 477
HinP1I GCGC 1 cut(s) 477
HincII GTYRAC 2 cut(s) 166, 177
HindII GTYRAC 2 cut(s) 166, 177
HinfI GANTC 8 cut(s) 77, 150, 295, 610, 624, 1139, 1214, 1284
HpaI GTTAAC 1 cut(s) 177
HpaII CCGG 2 cut(s) 201, 308
HphI GGTGA 4 cut(s) 65, 561, 652, 1033
Hpy166II GTNNAC 5 cut(s) 102, 166, 177, 470, 769
Hpy188I TCNGA 4 cut(s) 247, 254, 328, 775
Hpy8I GTNNAC 5 cut(s) 102, 166, 177, 470, 769
HpyCH4III ACNGT 3 cut(s) 640, 805, 1021
HpyCH4V TGCA 8 cut(s) 97, 102, 590, 635, 800, 840, 977, 1268
HpyF10VI GCNNNNNNNGC 4 cut(s) 518, 840, 911, 917
HpyF3I CTNAG 4 cut(s) 293, 522, 600, 657
Hsp92II CATG 6 cut(s) 631, 950, 966, 1146, 1221, 1226
HspAI GCGC 1 cut(s) 477
KroI GCCGGC 1 cut(s) 200
KroNI GCCGGC 1 cut(s) 202
KspAI GTTAAC 1 cut(s) 177
Kzo9I GATC 2 cut(s) 27, 270
LguI GCTCTTC 1 cut(s) 186
LmnI GCTCC 7 cut(s) 22, 113, 316, 683, 1087, 1120, 1195
Lsp1109I GCAGC 8 cut(s) 555, 852, 923, 1102, 1135, 1210, 1266, 1280
LweI GCATC 5 cut(s) 564, 660, 1102, 1135, 1210
MaeI CTAG 2 cut(s) 197, 515
MaeIII GTNAC 3 cut(s) 53, 805, 989
MalI GATC 2 cut(s) 29, 272
MbiI CCGCTC 1 cut(s) 25
MboI GATC 2 cut(s) 27, 270
MboII GAAGA 6 cut(s) 203, 379, 397, 545, 886, 1066
MhlI GDGCHC 5 cut(s) 104, 308, 491, 1161, 1236
MluCI AATT 4 cut(s) 248, 371, 745, 786
MlyI GAGTC 3 cut(s) 304, 618, 619
MmeI TCCRAC 1 cut(s) 437
MroNI GCCGGC 1 cut(s) 200
MseI TTAA 2 cut(s) 176, 972
MslI CAYNNNNRTG 1 cut(s) 107
MspA1I CMGCKG 2 cut(s) 914, 1257
MspI CCGG 2 cut(s) 201, 308
MspR9I CCNGG 2 cut(s) 308, 718
MvaI CCWGG 1 cut(s) 718
MvnI CGCG 1 cut(s) 477
MwoI GCNNNNNNNGC 4 cut(s) 518, 840, 911, 917
NaeI GCCGGC 1 cut(s) 202
NciI CCSGG 1 cut(s) 308
NdeII GATC 2 cut(s) 27, 270
NgoMIV GCCGGC 1 cut(s) 200
NheI GCTAGC 1 cut(s) 196
NlaIII CATG 6 cut(s) 631, 950, 966, 1146, 1221, 1226
NlaIV GGNNCC 4 cut(s) 312, 685, 921, 960
NmuCI GTSAC 3 cut(s) 53, 805, 989
PaeR7I CTCGAG 1 cut(s) 615
PagI TCATGA 1 cut(s) 946
PciSI GCTCTTC 1 cut(s) 186
PdiI GCCGGC 1 cut(s) 202
PfeI GAWTC 5 cut(s) 77, 150, 1139, 1214, 1284
PkrI GCNGC 8 cut(s) 545, 842, 913, 1092, 1125, 1200, 1256, 1270
PleI GAGTC 3 cut(s) 303, 618, 618
PpsI GAGTC 3 cut(s) 303, 618, 618
Psp6I CCWGG 1 cut(s) 716
PspEI GGTNACC 1 cut(s) 53
PspFI CCCAGC 1 cut(s) 724
PspGI CCWGG 1 cut(s) 716
PspN4I GGNNCC 4 cut(s) 312, 685, 921, 960
PspPI GGNCC 3 cut(s) 467, 958, 1238
PvuII CAGCTG 1 cut(s) 1257
RsaI GTAC 2 cut(s) 291, 796
RsaNI GTAC 2 cut(s) 290, 795
RseI CAYNNNNRTG 1 cut(s) 107
SapI GCTCTTC 1 cut(s) 186
SaqAI TTAA 2 cut(s) 176, 972
SatI GCNGC 8 cut(s) 544, 841, 912, 1091, 1124, 1199, 1255, 1269
Sau3AI GATC 2 cut(s) 27, 270
Sau96I GGNCC 3 cut(s) 467, 958, 1238
SchI GAGTC 3 cut(s) 304, 618, 619
ScrFI CCNGG 2 cut(s) 308, 718
SduI GDGCHC 5 cut(s) 104, 308, 491, 1161, 1236
SfaNI GCATC 5 cut(s) 564, 660, 1102, 1135, 1210
Sfr274I CTCGAG 1 cut(s) 615
SinI GGWCC 1 cut(s) 467
SlaI CTCGAG 1 cut(s) 615
SmiMI CAYNNNNRTG 1 cut(s) 107
SmlI CTYRAG 2 cut(s) 281, 615
SmoI CTYRAG 2 cut(s) 281, 615
Sse9I AATT 4 cut(s) 248, 371, 745, 786
SsiI CCGC 4 cut(s) 25, 462, 914, 1046
SspMI CTAG 2 cut(s) 197, 515
StyD4I CCNGG 2 cut(s) 306, 716
StyI CCWWGG 6 cut(s) 18, 480, 1097, 1130, 1205, 1288
TaaI ACNGT 3 cut(s) 640, 805, 1021
TaqI TCGA 3 cut(s) 30, 106, 616
TasI AATT 4 cut(s) 248, 371, 745, 786
TfiI GAWTC 5 cut(s) 77, 150, 1139, 1214, 1284
Tru1I TTAA 2 cut(s) 176, 972
Tru9I TTAA 2 cut(s) 176, 972
TscAI CASTG 7 cut(s) 99, 104, 142, 222, 514, 553, 661
TseFI GTSAC 3 cut(s) 53, 805, 989
TseI GCWGC 8 cut(s) 543, 840, 911, 1090, 1123, 1198, 1254, 1268
Tsp45I GTSAC 3 cut(s) 53, 805, 989
TspDTI ATGAA 3 cut(s) 224, 931, 935
TspRI CASTG 7 cut(s) 99, 104, 142, 222, 514, 553, 661
VneI GTGCAC 1 cut(s) 100
VpaK11BI GGWCC 1 cut(s) 467
XapI RAATTY 3 cut(s) 248, 371, 745
XcmI CCANNNNNNNNNTGG 1 cut(s) 127
XhoI CTCGAG 1 cut(s) 615
XspI CTAG 2 cut(s) 197, 515
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.